mRNA_H-canaliculatus_F_contig1152.1345.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig1152.1345.1
Unique NamemRNA_H-canaliculatus_F_contig1152.1345.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1152.1345.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig1152contigH-canaliculatus_F_contig1152:21615..24496 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Ec32 ortholog descriptionFNIP
Ec32 orthologEc-07_002010.1
Hectar predicted targeting categoryother localisation
Exons3
Model size795
Cds size432
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig1152.1345.1prot_H-canaliculatus_F_contig1152.1345.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig1152 21615..22686 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928840.634249-CDS-H-canaliculatus_F_contig1152:21614..219251622928840.634249-CDS-H-canaliculatus_F_contig1152:21614..21925Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1152 21615..21925 -
1696845584.8973176-CDS-H-canaliculatus_F_contig1152:21614..219251696845584.8973176-CDS-H-canaliculatus_F_contig1152:21614..21925Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1152 21615..21925 -
1622928840.648166-CDS-H-canaliculatus_F_contig1152:22565..226861622928840.648166-CDS-H-canaliculatus_F_contig1152:22565..22686Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1152 22566..22686 -
1696845584.9062161-CDS-H-canaliculatus_F_contig1152:22565..226861696845584.9062161-CDS-H-canaliculatus_F_contig1152:22565..22686Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1152 22566..22686 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928840.663456-UTR-H-canaliculatus_F_contig1152:22686..227241622928840.663456-UTR-H-canaliculatus_F_contig1152:22686..22724Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1152 22687..22724 -
1696845584.914182-UTR-H-canaliculatus_F_contig1152:22686..227241696845584.914182-UTR-H-canaliculatus_F_contig1152:22686..22724Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1152 22687..22724 -
1622928840.6787007-UTR-H-canaliculatus_F_contig1152:24171..244961622928840.6787007-UTR-H-canaliculatus_F_contig1152:24171..24496Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1152 24172..24496 -
1696845584.9243276-UTR-H-canaliculatus_F_contig1152:24171..244961696845584.9243276-UTR-H-canaliculatus_F_contig1152:24171..24496Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1152 24172..24496 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig1152.1345.1

>prot_H-canaliculatus_F_contig1152.1345.1 ID=prot_H-canaliculatus_F_contig1152.1345.1|Name=mRNA_H-canaliculatus_F_contig1152.1345.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=144bp
MGGQPSSEEDVAGEQQPGSEEKAGEGGEQKEQEATAAAVGEQTAADDGSR
GDQGGTLVGSDVAVAEEAAAEDAPTAAALEGTAAPVKENESCPSAEEGRG
HAASAAGAAGSAGTAAAAAAAGATAAAAAGTAAAAEGRENTPEI
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mRNA from alignment at H-canaliculatus_F_contig1152:21615..24496-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig1152.1345.1 ID=mRNA_H-canaliculatus_F_contig1152.1345.1|Name=mRNA_H-canaliculatus_F_contig1152.1345.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=2882bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1152:21615..24496- (Hapterophycus canaliculatus Oshoro5f female)
TTGGGAATTGTTCCGTTGTTTTCACACAGGACTTGCTGCAACAGCGCCTG
CTCTCCCACCTTATTCAGGACGAAGGTGTGTATACAACGACAGGCAACGT
AAAGGAGCGCGAGTTTCTGTTGGGGCACGCTAAAACGCTCGCAGACTCTG
TAATCGTGTCAAAAGGGAGATACAGGAGATATATATATCAGAAACGTCTC
GAGCAGGTGTGACCGAACTCAAACTTGAAGGTGGCGGATGGAACTGCTGT
TCGCTCGCACCTGAGCTCCGGAGCCCCGGGGGCTCTCTTCTACCACACAT
CGAGGGCACCACCGTACGTATCGAGGTGAGAGGCATGGGCCACAGAGGCA
GCACGTTCATGCGGCCAGTTGTTGAGGATACGTTCTTTCCCATCTGACCG
TAGAACATGGTTCCATTACCCCGCCTTTCTTTGCCGACGAACGAACGGCG
AGCGTCAAGTTGCAGACGTGAATGAGCCTCCAGCACATCACACACACGTA
GAGCACACCTCGTCGGGAGGTGGTCTCAGCGTTCAGTTTTCGCTGTCTGA
CGCGAAGGAGATGTTTGTGTTTGCTGGATTGTGTCATCCATGTGCGGCCG
CGGTAGTGCAGGGTGACTGAAGTAAAGTCAGTGTCGCATGTTCGCCGATC
GCTCAAAGGGTGCATAACTGCATCACGCTTTTTGATCGCCGAGTTCGCAC
CTGTGAGAAGTGTCCTGCTTCGCAACTGCCAGAAGTAACAGCACCTTGGA
CCTGAACCTCTGAACCTTGAGCATGACGGGCGAAAGTGCGAGGCATTTGT
TTCCAGCTTCCACCTCGACAAGGGAAATCCTCAGTGTGGGGGCGTTGCTC
CGTTCTGACAAAAAACACTCTCCCTCGAAAGTGCTTGCATACTTTTACTC
CTCCTCGGCTGTCCACAAGCTTCGAGAGTTTTTGTCTCCAGCACGGCCCT
TGTGGCGAGAAGCATTCATCGTCCCTAGAACCCCTCGAGCGTCACCACCG
CCAGAATCTCACCGCGGCAATTCGTATTTCGTGCCGCACATAACAAGTGC
TCCTGTCACGCTCAGGTTTCGGATGACCAGAGCTTGAAAGGCGAGAAGGC
CAGTCATGGCATAACTATAACTGCCGCACCAGACACGTACTTGTACATAC
TCCCGTTCGTTCTCTGAGGGCTGGGTTGTCTTTTGTCTTTGGTCGAAAGC
TTCGTACAGGATGGCCGTTGCCGCTGATTTCCCCCACACGGTGTCAGTTC
TTGGGCGGAGAAAACGAGTTCTTTTTTTCTAGATTCTGGGCTCCTGCTGT
GTGGACCCTTGTTGCATTCCGCAGCAAAGAGGTGGCACACGTCGCATGTT
GTAGGGAGTCGGTCGTTGCTCATGGCGTCGTTTTCCCTCGCCGTCAAGCA
CCGAGCAACTCACCACGCGCACCACGATCGCCATCAGCGGCAGCGGCAAC
AGCAGTTTCGTCCTCCTAGTAACACCTGGTCGGGCGCGGGGTTTCCTTTC
CTTTGGTTGGGATCTTGCGGAACGAGAACGGCGCAACACAGCCGATAGGT
CCTTCGCACGAGGTAAAGGTGGGCATCGGCGACTGTGCCCCTTCTATAGC
TTCAAAGATGAGCAAGGCAAGCGTTTACACAAAGATACACACCGCGATAC
TGAACCCCCACTGCAGGGAATTCAGCACAATCCCCCCAGGGTGCTATACT
TTGCCTCAGAGGCGGGTATTCCTTTGCTGTTGTTGACTTCTTTTTCTAAT
AAGATGCACCACACATGCTCAGACACGCGCAGGTAGCGGCACCGCTACGC
CGGCTAAGGTATGGGAGGCCAACCCTCCAGCGAGGAAGACGTCGCCGGCG
AACAGCAACCTGGGTCGGAAGAAAAAGCGGGGGAAGGCGGGGAACAAAAA
GAACAAGAGGCTACAGCCGCCGCTGTCGGAGGTGAGAACTGCTTCGAAGT
TGAGAGGAAGGGGCAGGTGATGAGTCGATCCGTGCGATTTCGACCTCGTT
CAAACACAAAGAGCGCGACCACGATGCCCTAATGACCCTGTGTCAGGCGG
TGGATGAACGCCTCCATAAGATTTTCACGCCGTGCACTCGCGCCCTTGAA
ATGGGTAACCTCTGCGCAAGCGCGGATGCCGGTGAGCTTCGGGGCGGTTC
TCTCTGGCGTATTATTTTCACGGCCCGACTCCCCGCCCCGGGGTCAAAGA
GCCATGCCATGCGTAGCAACTTCGCATCCATCATCCTCGATGATTCCGTT
CTCTAAGGGTATTGGGAGCCGTTCCGCTGCAACCCATCGCCAACGTCAGG
GATGCCAATGCTTCTCTAGCATGCATGGGCGTGCGCCCTCCCCGCCCCCT
CCCCCTCACCTATCGATGAAAACAGTGGTTGACGTCACCCCAGGGTCCTT
ACCGCATGCCTCTATCGCTCTGATGGCTCCCGGCCCAGTGGCCAAGCTTG
AAGTCTGTGGAGCGTATGGTGGCGCATGCAGCGGATCGGGCACATCCGAA
CTGAGGGAGGAACAACGGCTTTGTCTGATGGTCGGCACGCGATCGCTTTT
CTTCACTTGCCCCCCCTTAAGAACAAACGGCAGCAGATGACGGCTCGCGG
GGAGACCAAGGCGGCACTCTTGTGGGATCCGACGTCGCAGTGGCGGAAGA
AGCAGCAGCGGAGGATGCACCGACAGCGGCGGCGTTGGAGGGGACGGCGG
CGCCTGTCAAGGAAAACGAGAGCTGCCCGTCGGCTGAGGAGGGAAGAGGT
CACGCCGCTAGCGCCGCTGGCGCCGCTGGCAGCGCCGGCACCGCCGCCGC
AGCAGCAGCAGCAGGAGCCACCGCAGCAGCAGCAGCAGGAACCGCCGCAG
CAGCCGAAGGACGTGAGAACACCCCCGAGATA
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig1152:21615..24496-

>mRNA_H-canaliculatus_F_contig1152.1345.1 ID=mRNA_H-canaliculatus_F_contig1152.1345.1|Name=mRNA_H-canaliculatus_F_contig1152.1345.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=864bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1152:21615..24496- (Hapterophycus canaliculatus Oshoro5f female)
ATGGGAGGCCAACCCTCCAGCGAGGAAGACGTCGCCGGCGAACAGCAACC
TGGGTCGGAAGAAAAAGCGGGGGAAGGCGGGGAACAAAAAGAACAAGAGG
CTACAGCCGCCGCTGTCGGAGATGGGAGGCCAACCCTCCAGCGAGGAAGA
CGTCGCCGGCGAACAGCAACCTGGGTCGGAAGAAAAAGCGGGGGAAGGCG
GGGAACAAAAAGAACAAGAGGCTACAGCCGCCGCTGTCGGAGAACAAACG
GCAGCAGATGACGGCTCGCGGGGAGACCAAGGCGGCACTCTTGTGGGATC
CGACGTCGCAGTGGCGGAAGAAGCAGCAGCGGAGGATGCACCGACAGCGG
CGGCGTTGGAGGGGACGGCGGCGCCTGTCAAGGAAAACGAGAGCTGCCCG
TCGGCTGAGGAGGGAAGAGGTCACGCCGCTAGCGCCGCTGGCGCCGCTGG
CAGCGCCGGCACCGCCGCCGCAGCAGCAGCAGCAGGAGCCACCGCAGCAG
CAGCAGCAGGAACCGCCGCAGCAGCCGAAGGACGTGAGAACACCCCCGAG
ATAAACAAACGGCAGCAGATGACGGCTCGCGGGGAGACCAAGGCGGCACT
CTTGTGGGATCCGACGTCGCAGTGGCGGAAGAAGCAGCAGCGGAGGATGC
ACCGACAGCGGCGGCGTTGGAGGGGACGGCGGCGCCTGTCAAGGAAAACG
AGAGCTGCCCGTCGGCTGAGGAGGGAAGAGGTCACGCCGCTAGCGCCGCT
GGCGCCGCTGGCAGCGCCGGCACCGCCGCCGCAGCAGCAGCAGCAGGAGC
CACCGCAGCAGCAGCAGCAGGAACCGCCGCAGCAGCCGAAGGACGTGAGA
ACACCCCCGAGATA
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