mRNA_H-canaliculatus_F_contig1152.1343.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig1152.1343.1
Unique NamemRNA_H-canaliculatus_F_contig1152.1343.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1152.1343.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig1152contigH-canaliculatus_F_contig1152:4400..5050 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size651
Cds size381
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig1152.1343.1prot_H-canaliculatus_F_contig1152.1343.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig1152 4663..5043 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928840.7703552-UTR-H-canaliculatus_F_contig1152:4399..46621622928840.7703552-UTR-H-canaliculatus_F_contig1152:4399..4662Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1152 4400..4662 +
1696845584.9595654-UTR-H-canaliculatus_F_contig1152:4399..46621696845584.9595654-UTR-H-canaliculatus_F_contig1152:4399..4662Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1152 4400..4662 +
1622928840.79485-UTR-H-canaliculatus_F_contig1152:5043..50501622928840.79485-UTR-H-canaliculatus_F_contig1152:5043..5050Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1152 5044..5050 +
1696845584.9854383-UTR-H-canaliculatus_F_contig1152:5043..50501696845584.9854383-UTR-H-canaliculatus_F_contig1152:5043..5050Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1152 5044..5050 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928840.7839181-CDS-H-canaliculatus_F_contig1152:4662..50431622928840.7839181-CDS-H-canaliculatus_F_contig1152:4662..5043Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1152 4663..5043 +
1696845584.970647-CDS-H-canaliculatus_F_contig1152:4662..50431696845584.970647-CDS-H-canaliculatus_F_contig1152:4662..5043Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1152 4663..5043 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig1152.1343.1

>prot_H-canaliculatus_F_contig1152.1343.1 ID=prot_H-canaliculatus_F_contig1152.1343.1|Name=mRNA_H-canaliculatus_F_contig1152.1343.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=127bp
MLERTGFSASRRQARANPTPLPPHAPYDWANRDSTPSPSLFSRRLGRSYP
HPPAWKNPVSRSCVRSEVPKPQRTNAGVEEDRQTRKIKRHGIAAARKEGR
RAGRHPGRRGVAGQGRRGGWGGGGVR*
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mRNA from alignment at H-canaliculatus_F_contig1152:4400..5050+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig1152.1343.1 ID=mRNA_H-canaliculatus_F_contig1152.1343.1|Name=mRNA_H-canaliculatus_F_contig1152.1343.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=651bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1152:4400..5050+ (Hapterophycus canaliculatus Oshoro5f female)
AGCGCGCCTGAAGCTTGACGCAGCACAGCGGTGACGCTCGATGCAGCACA
GCTGTGCCGCCTCGTCTTTCGCGTTCGAAGAGCGCTTCCGACCCTCTCAC
GAGCGTGCGTCGGAGTGGATGACGAGGGCGCGCGTCGTCGGTCGGCGCGG
GACGTGCTCGGTGGCGGCCGAATCGAAAGGCTTGGACAGGGACACGTCCG
TCTGCGGAGGCTCGGGTACCTCGAAGCGGTGGCGGCGGGTAGTGCCGCAC
TCCCCGGTCAGCGATGCTTGAACGGACAGGCTTTTCGGCGAGTCGTCGGC
AAGCCCGTGCCAACCCCACCCCCCTACCCCCGCACGCCCCGTACGACTGG
GCAAATCGCGATTCCACCCCCTCGCCCTCCCTCTTCTCCCGGCGACTGGG
AAGGTCTTACCCGCACCCACCTGCATGGAAGAACCCCGTGTCCAGGAGCT
GCGTCAGGTCTGAAGTTCCCAAGCCGCAAAGGACAAACGCCGGGGTGGAG
GAGGACAGGCAGACACGCAAGATCAAGCGACACGGGATAGCAGCAGCGAG
GAAGGAAGGCAGGCGGGCAGGCAGGCATCCAGGAAGAAGGGGCGTCGCGG
GACAGGGACGACGCGGGGGGTGGGGAGGCGGGGGAGTTCGTTGAGATATC
A
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig1152:4400..5050+

>mRNA_H-canaliculatus_F_contig1152.1343.1 ID=mRNA_H-canaliculatus_F_contig1152.1343.1|Name=mRNA_H-canaliculatus_F_contig1152.1343.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=762bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1152:4400..5050+ (Hapterophycus canaliculatus Oshoro5f female)
ATGCTTGAACGGACAGGCTTTTCGGCGAGTCGTCGGCAAGCCCGTGCCAA
CCCCACCCCCCTACCCCCGCACGCCCCGTACGACTGGGCAAATCGCGATT
CCACCCCCTCGCCCTCCCTCTTCTCCCGGCGACTGGGAAGGTCTTACCCG
CACCCACCTGCATGGAAGAACCCCGTGTCCAGGAGCTGCGTCAGGTCTGA
AGTTCCCAAGCCGCAAAGGACAAACGCCGGGGTGGAGGAGGACAGGCAGA
CACGCAAGATCAAGCGACACGGGATAGCAGCAGCGAGGAAGGAAGGCAGG
CGGGCAGGCAGGCATCCAGGAAGAAGGGGCGTCGCGGGACAGGGACGACG
CGGGGGGTGGGGAGGCGGGGGAGTTCGTTGAATGCTTGAACGGACAGGCT
TTTCGGCGAGTCGTCGGCAAGCCCGTGCCAACCCCACCCCCCTACCCCCG
CACGCCCCGTACGACTGGGCAAATCGCGATTCCACCCCCTCGCCCTCCCT
CTTCTCCCGGCGACTGGGAAGGTCTTACCCGCACCCACCTGCATGGAAGA
ACCCCGTGTCCAGGAGCTGCGTCAGGTCTGAAGTTCCCAAGCCGCAAAGG
ACAAACGCCGGGGTGGAGGAGGACAGGCAGACACGCAAGATCAAGCGACA
CGGGATAGCAGCAGCGAGGAAGGAAGGCAGGCGGGCAGGCAGGCATCCAG
GAAGAAGGGGCGTCGCGGGACAGGGACGACGCGGGGGGTGGGGAGGCGGG
GGAGTTCGTTGA
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