mRNA_H-canaliculatus_F_contig11513.1339.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig11513.1339.1
Unique NamemRNA_H-canaliculatus_F_contig11513.1339.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig11513.1339.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig11513contigH-canaliculatus_F_contig11513:2884..3558 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size656
Cds size519
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig11513.1339.1prot_H-canaliculatus_F_contig11513.1339.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig11513 2917..3454 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928840.459368-UTR-H-canaliculatus_F_contig11513:2883..29161622928840.459368-UTR-H-canaliculatus_F_contig11513:2883..2916Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig11513 2884..2916 -
1696845584.8274758-UTR-H-canaliculatus_F_contig11513:2883..29161696845584.8274758-UTR-H-canaliculatus_F_contig11513:2883..2916Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig11513 2884..2916 -
1622928840.516792-UTR-H-canaliculatus_F_contig11513:3454..35581622928840.516792-UTR-H-canaliculatus_F_contig11513:3454..3558Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig11513 3455..3558 -
1696845584.8559935-UTR-H-canaliculatus_F_contig11513:3454..35581696845584.8559935-UTR-H-canaliculatus_F_contig11513:3454..3558Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig11513 3455..3558 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928840.472856-CDS-H-canaliculatus_F_contig11513:2916..30621622928840.472856-CDS-H-canaliculatus_F_contig11513:2916..3062Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11513 2917..3062 -
1696845584.8351703-CDS-H-canaliculatus_F_contig11513:2916..30621696845584.8351703-CDS-H-canaliculatus_F_contig11513:2916..3062Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11513 2917..3062 -
1622928840.4956222-CDS-H-canaliculatus_F_contig11513:3081..34541622928840.4956222-CDS-H-canaliculatus_F_contig11513:3081..3454Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11513 3082..3454 -
1696845584.8452957-CDS-H-canaliculatus_F_contig11513:3081..34541696845584.8452957-CDS-H-canaliculatus_F_contig11513:3081..3454Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11513 3082..3454 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig11513.1339.1

>prot_H-canaliculatus_F_contig11513.1339.1 ID=prot_H-canaliculatus_F_contig11513.1339.1|Name=mRNA_H-canaliculatus_F_contig11513.1339.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=173bp
MEALNLGPRGGLGGRTQGRAPPHCRKPSCRVSRSEDPMCRGRVKAANRCF
RGLIVRVRVRSARARTNERRRSRFLSAMFFGVDAFASSVLSVWPPRHGSC
PARGHRGPRATPHGAGCVVPAASQGFVARPFRCAGVNRVHRRSRGEVGGR
FAAACFSSTLFSAWWRFDSAKG*
back to top

mRNA from alignment at H-canaliculatus_F_contig11513:2884..3558-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig11513.1339.1 ID=mRNA_H-canaliculatus_F_contig11513.1339.1|Name=mRNA_H-canaliculatus_F_contig11513.1339.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=675bp|location=Sequence derived from alignment at H-canaliculatus_F_contig11513:2884..3558- (Hapterophycus canaliculatus Oshoro5f female)
CTTTATCGGCGATAAGCCCGAGGAGCCCCCATACCGGTGACGGCAGCGCG
CAAGCCCTCGATCGCGTCACCGCTGGCCGCTTTGACGTCGACCCCGACGC
CAGCATGGAGGCCCTAAACCTGGGGCCACGGGGGGGGCTCGGCGGACGAA
CCCAAGGCCGAGCCCCCCCCCATTGCCGAAAACCCTCCTGTCGCGTGTCC
AGATCCGAGGACCCGATGTGTAGAGGTCGCGTGAAGGCCGCCAATCGTTG
CTTTCGTGGCTTGATTGTTCGCGTGCGAGTCCGGTCTGCCCGCGCAAGAA
CAAATGAGCGGAGAAGGTCGCGTTTTTTGTCGGCGATGTTTTTCGGAGTT
GATGCGTTCGCGTCGAGCGTCTTGTCTGTCTGGCCTCCGCGTCATGGCTC
TTGTCCGGCCCGTGGGCACCGAGGCCCGCGAGCGACCCCGCACGGCGCAG
GGTGCGTGGTACCCGCGGCGAGTCAGGGTCACCCGCGGCGAGTCAGGGTT
TGTGGCCCGGCCCTTTCGTTGCGCAGGAGTAAATCGAGTCCACCGACGCT
CTCGCGGGGAAGTCGGAGGGCGGTTCGCGGCCGCGTGTTTCTCGTCCACG
TTGTTTTCTGCCTGGTGGCGTTTCGATAGCGCGAAGGGGTAGCCCTTGGG
TGGAGTGGTTTCGACGAGTGTGGGG
back to top

Coding sequence (CDS) from alignment at H-canaliculatus_F_contig11513:2884..3558-

>mRNA_H-canaliculatus_F_contig11513.1339.1 ID=mRNA_H-canaliculatus_F_contig11513.1339.1|Name=mRNA_H-canaliculatus_F_contig11513.1339.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1038bp|location=Sequence derived from alignment at H-canaliculatus_F_contig11513:2884..3558- (Hapterophycus canaliculatus Oshoro5f female)
ATGGAGGCCCTAAACCTGGGGCCACGGGGGGGGCTCGGCGGACGAACCCA
AGGCCGAGCCCCCCCCCATTGCCGAAAACCCTCCTGTCGCGTGTCCAGAT
CCGAGGACCCGATGTGTAGAGGTCGCGTGAAGGCCGCCAATCGTTGCTTT
CGTGGCTTGATTGTTCGCGTGCGAGTCCGGTCTGCCCGCGCAAGAACAAA
TGAGCGGAGAAGGTCGCGTTTTTTGTCGGCGATGTTTTTCGGAGTTGATG
CGTTCGCGTCGAGCGTCTTGTCTGTCTGGCCTCCGCGTCATGGCTCTTGT
CCGGCCCGTGGGCACCGAGGCCCGCGAGCGACCCCGCACGGCGCAGGGTG
CGTGGTACCCGCGGCGAGTCAGGATGGAGGCCCTAAACCTGGGGCCACGG
GGGGGGCTCGGCGGACGAACCCAAGGCCGAGCCCCCCCCCATTGCCGAAA
ACCCTCCTGTCGCGTGTCCAGATCCGAGGACCCGATGTGTAGAGGTCGCG
TGAAGGCCGCCAATCGTTGCTTTCGTGGCTTGATTGTTCGCGTGCGAGTC
CGGTCTGCCCGCGCAAGAACAAATGAGCGGAGAAGGTCGCGTTTTTTGTC
GGCGATGTTTTTCGGAGTTGATGCGTTCGCGTCGAGCGTCTTGTCTGTCT
GGCCTCCGCGTCATGGCTCTTGTCCGGCCCGTGGGCACCGAGGCCCGCGA
GCGACCCCGCACGGCGCAGGGTGCGTGGTACCCGCGGCGAGTCAGGGGTT
TGTGGCCCGGCCCTTTCGTTGCGCAGGAGTAAATCGAGTCCACCGACGCT
CTCGCGGGGAAGTCGGAGGGCGGTTCGCGGCCGCGTGTTTCTCGTCCACG
TTGTTTTCTGCCTGGTGGCGTTTCGATAGCGCGAAGGGGTAGGGTTTGTG
GCCCGGCCCTTTCGTTGCGCAGGAGTAAATCGAGTCCACCGACGCTCTCG
CGGGGAAGTCGGAGGGCGGTTCGCGGCCGCGTGTTTCTCGTCCACGTTGT
TTTCTGCCTGGTGGCGTTTCGATAGCGCGAAGGGGTAG
back to top