mRNA_H-canaliculatus_F_contig11510.1338.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig11510.1338.1
Unique NamemRNA_H-canaliculatus_F_contig11510.1338.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig11510.1338.1 vs. uniprot
Match: D8LT03_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LT03_ECTSI)

HSP 1 Score: 102 bits (253), Expect = 4.800e-23
Identity = 47/70 (67.14%), Postives = 57/70 (81.43%), Query Frame = 2 
Query:  227 MDEAFENRFTPFWEEALLLPQLGVELNGNAVKVAFGSTELACAALLLTRHKFIASVVLFGLMSGVLLTHV 436
            MDEAFENRFTPFW+E     ++GVELN  AVK+ FGSTE+ CAALL T HKF A+++LFGLMS V+LTH+
Sbjct:    1 MDEAFENRFTPFWQEMFFFSEIGVELNAAAVKLIFGSTEVLCAALLFTSHKFSAAIMLFGLMSAVVLTHL 70
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig11510.1338.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LT03_ECTSI4.800e-2367.14Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig11510contigH-canaliculatus_F_contig11510:47..2421 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-08_004330.1
Exons3
Model size1106
Cds size351
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig11510.1338.1prot_H-canaliculatus_F_contig11510.1338.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig11510 681..2300 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928840.298556-UTR-H-canaliculatus_F_contig11510:46..6801622928840.298556-UTR-H-canaliculatus_F_contig11510:46..680Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig11510 47..680 -
1696845584.776897-UTR-H-canaliculatus_F_contig11510:46..6801696845584.776897-UTR-H-canaliculatus_F_contig11510:46..680Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig11510 47..680 -
1622928840.3894506-UTR-H-canaliculatus_F_contig11510:2300..24211622928840.3894506-UTR-H-canaliculatus_F_contig11510:2300..2421Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig11510 2301..2421 -
1696845584.8162124-UTR-H-canaliculatus_F_contig11510:2300..24211696845584.8162124-UTR-H-canaliculatus_F_contig11510:2300..2421Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig11510 2301..2421 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928840.3154414-CDS-H-canaliculatus_F_contig11510:680..8161622928840.3154414-CDS-H-canaliculatus_F_contig11510:680..816Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11510 681..816 -
1696845584.7854452-CDS-H-canaliculatus_F_contig11510:680..8161696845584.7854452-CDS-H-canaliculatus_F_contig11510:680..816Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11510 681..816 -
1622928840.3363757-CDS-H-canaliculatus_F_contig11510:1215..13491622928840.3363757-CDS-H-canaliculatus_F_contig11510:1215..1349Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11510 1216..1349 -
1696845584.7946417-CDS-H-canaliculatus_F_contig11510:1215..13491696845584.7946417-CDS-H-canaliculatus_F_contig11510:1215..1349Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11510 1216..1349 -
1622928840.3641725-CDS-H-canaliculatus_F_contig11510:2219..23001622928840.3641725-CDS-H-canaliculatus_F_contig11510:2219..2300Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11510 2220..2300 -
1696845584.8039348-CDS-H-canaliculatus_F_contig11510:2219..23001696845584.8039348-CDS-H-canaliculatus_F_contig11510:2219..2300Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11510 2220..2300 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig11510.1338.1

>prot_H-canaliculatus_F_contig11510.1338.1 ID=prot_H-canaliculatus_F_contig11510.1338.1|Name=mRNA_H-canaliculatus_F_contig11510.1338.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=117bp
MGFILGVMKLFLCGTFFLSGLSKLTPKWGADVHAAMDEAFENRFTPFWEE
ALLLPQLGVELNGNAVKVAFGSTELACAALLLTRHKFIASVVLFGLMSGV
LLTHVRSQNRAGDEAL*
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mRNA from alignment at H-canaliculatus_F_contig11510:47..2421-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig11510.1338.1 ID=mRNA_H-canaliculatus_F_contig11510.1338.1|Name=mRNA_H-canaliculatus_F_contig11510.1338.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=2375bp|location=Sequence derived from alignment at H-canaliculatus_F_contig11510:47..2421- (Hapterophycus canaliculatus Oshoro5f female)
CCGCCCAGTCCCACATCCCACACCGAGCGCTACACACCGCACACCTGTCC
CCGTCTTAGCTCTTGTTGTTTCTACTGCTGCTGCTACTGCTGCCACTACT
GCTGCCGCTGCTGCCGGCAAAATGGGATTCATCTTAGGTGTGATGAAGCT
CTTCTTGTGCGGCACGTTCTTCTTGTCCGGTCTCTCCAAACTCACGCCTA
AGGTATTCAGCCCCCCCTTGACCGAACCTTGACCGAACCCGTTCGGTGCA
ACCCCATCGCCGCTTTTTTGTGGTAGATCGCGGCGGCCCATGCAGGCTCG
AGACGAAGCTCCGGGGATAGACTTGACATTCTCGACTCCTGGGACCACTG
GGTACACTCGGCGTTGTTGCGTAGCAATAATCTTCCCAGGATAACTGCCT
GGGATCTACTATAGAACTCAGTTTTTGCACGTATCGCGCCGAGGTAGTGT
TCGAGGGAAAACTCGAGCCAATCCTCATTTACAAGGAAAGCGGTCTTGCC
GAACGCAATGCCTCTCCCATTGATGAAGAGCCGTATGTGCTGCTTCAGCT
CTCGTGATCGGCGCAGCGAAAACAAGGTTTGAATTTTGAGCGTACGTGGT
ACGCAACCACGACGTTGTTGCTCGGGGCGTTCGGGGTTCTTTAGTCGCCG
CTTTGCAGCCTGCTCGAGGTGTTGCTCCCCTCTACACGCTCGAGCTGTGC
ACGGCTGGCGGGTCACACGCGTGTTGCTTTCCGCGGGCAAGCTTCAACGC
GCTCCCAAAACGAGCCTGATGAGGTGCCCAACTGTGGAGACAAGAGACCT
ATGCGGCGGGCTGCTTCTACCACGGCACCGCTTCCCCCGATGTACGCCGG
CTGCAAAGGTATATCGTCTTGACTTCCTCGTTCTCACCACCACCTTCTTC
TCTGTTGCCTTGACAAAACACGTCGAAATTGGTTTGCGGCGGCGGCGCGC
TTTCTGACTCGTTGCGTCCTGGGTGCACCCGCACCGTAAACGATTGCTAT
GACGACGTCGACGGCGGCGGCGACTAAAACTACGACAACAACGACGGCTA
ATTTGACGGTTTCCTCCGGAAGTGGGGTGCCGACGTGCACGCCGCCATGG
ACGAGGCGTTCGAGAACAGATTTACGCCCTTTTGGGAGGAGGCGTTGTTG
TTGCCGCAGCTGGGCGTGGAGCTCAACGGTAACGCGGTGAAGGTGGCGTT
CGGAAGGTGAGGGAGGCGCATAGCGGAGGCCGTTCATCTCACTTCTTGCC
GCCTGCTGCGCTTGCCGGCCGCGTATACCCGTAGGCTCCACCGCTGGTGT
GCGATACGTTTCAGGCTTCCGACCTGTCGCGTTTCATTAGTTCGTAGGGC
GAACTTCGGCCGTGTCGCAGGGGCATTCGGGGGAACCTGCCCTGAGATTG
ACGCGGGCGCACGGCACGGCCGTAGATGTGGCCCAGAGAAATTTGTTTTG
AACGTCCGGAACATGGTCGTGGGCCACGCCACCCCCCGACGTCGCCTCTC
CTCCTATCCCGTTCTATTCATCCGGTGCTTCGGACACTTTGCTTGTGGCC
TTCTGTTCTCGCAATTCAAATGGATTACGCGACACGGGGGGATGCGGCAT
TCCAGCACGGAGCTAGCCTGCGCCGCTCTCCTGCTCACGCGGCACAAGTT
CATCGCTTCGGTCGTTCTCTTCGGGCTCATGTCGGGCGTCCTGCTCACCC
ACGTAAGATCTCAGAACAGGGCAGGCGACGAGGCACTTTGAAGGATGGGG
CACCTGCTACAACCACCCGCAGCTTTTTGTGTGTGGTTGCTTTTGTCCTT
TCTGTCGTTGCTGCTCGTTGCGCGTTCAGTTTTTCGTAGGGCCTTATCTT
ATGTGCGTGCCTACGCTTCGTTTGGGCTTTTTTCGTGCGCAGCACTTCAT
CACGCAGTACGAGCGCCAGCAAACACCGCTTATCATGTAGACCGTACAGT
GGTGCGCCCGTTGTCATCATGGTTGCTTGGGCAGTGCGAAAGGAATTCAG
CTCATACTGAGTAGCCGCCGCCCAGTGAAGGTGTTGTCCGAATTCAACCC
GCCGGCTGTCGCCAACAGCAGCAGCTCTGCAGCAGCTCGACAGCATTTCA
CTTCCAGTCGGGGTGGCATGCATCTTCTAGTCGCAGAGCACTTCAGCTGT
GGCAGCCTCTTTCGTCTCTGATCACCAGCCTCTACCAAAGTAGTGCTTGA
TTAATTCACCTGTGAGGAGTGCTTGATGAATTCATCTGCGTGGTTCTACA
TCTGCATGGCCGCTCCCGAGATAAGCTACCCGGTACTCCACAAACACCTA
CCTGAAACTAACAATTGATAGAAAGCAAAACATACCCAGTCCGAAGTACG
CGAAAAACAATATCAGTCCCGATGA
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig11510:47..2421-

>mRNA_H-canaliculatus_F_contig11510.1338.1 ID=mRNA_H-canaliculatus_F_contig11510.1338.1|Name=mRNA_H-canaliculatus_F_contig11510.1338.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=702bp|location=Sequence derived from alignment at H-canaliculatus_F_contig11510:47..2421- (Hapterophycus canaliculatus Oshoro5f female)
ATGGGATTCATCTTAGGTGTGATGAAGCTCTTCTTGTGCGGCACGTTCTT
CTTGTCCGGTCTCTCCAAACTCACGCCTAAGATGGGATTCATCTTAGGTG
TGATGAAGCTCTTCTTGTGCGGCACGTTCTTCTTGTCCGGTCTCTCCAAA
CTCACGCCTAAGTGGGGTGCCGACGTGCACGCCGCCATGGACGAGGCGTT
CGAGAACAGATTTACGCCCTTTTGGGAGGAGGCGTTGTTGTTGCCGCAGC
TGGGCGTGGAGCTCAACGGTAACGCGGTGAAGGTGGCGTTCGGAAGTGGG
GTGCCGACGTGCACGCCGCCATGGACGAGGCGTTCGAGAACAGATTTACG
CCCTTTTGGGAGGAGGCGTTGTTGTTGCCGCAGCTGGGCGTGGAGCTCAA
CGGTAACGCGGTGAAGGTGGCGTTCGGAAGCACGGAGCTAGCCTGCGCCG
CTCTCCTGCTCACGCGGCACAAGTTCATCGCTTCGGTCGTTCTCTTCGGG
CTCATGTCGGGCGTCCTGCTCACCCACGTAAGATCTCAGAACAGGGCAGG
CGACGAGGCACTTTGACACGGAGCTAGCCTGCGCCGCTCTCCTGCTCACG
CGGCACAAGTTCATCGCTTCGGTCGTTCTCTTCGGGCTCATGTCGGGCGT
CCTGCTCACCCACGTAAGATCTCAGAACAGGGCAGGCGACGAGGCACTTT
GA
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