mRNA_H-canaliculatus_F_contig11509.1334.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig11509.1334.1
Unique NamemRNA_H-canaliculatus_F_contig11509.1334.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig11509.1334.1 vs. uniprot
Match: A0A6H5KST8_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KST8_9PHAE)

HSP 1 Score: 105 bits (263), Expect = 5.120e-24
Identity = 57/65 (87.69%), Postives = 60/65 (92.31%), Query Frame = 1 
Query:  115 PPRGSLLFGLGGASAAESLMAARFAEHRAVVEEEHLRLEYAMAALDAAGARARRHWRRVSRLSEA 309
            PPRGSL+FGLGGA+AAESL A   AEHR VVEEEHLRLEYAMAALDAAGARARRHWRRVSRL+EA
Sbjct: 1320 PPRGSLIFGLGGAAAAESLAATVLAEHRLVVEEEHLRLEYAMAALDAAGARARRHWRRVSRLAEA 1384
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig11509.1334.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KST8_9PHAE5.120e-2487.69Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig11509contigH-canaliculatus_F_contig11509:2830..3204 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score111.7
Seed ortholog evalue2.5e-22
Seed eggNOG ortholog2880.D8LFY8
EggNOG free text desc.platelet formation
EggNOG OGsKOG1787@1,KOG1787@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size376
Cds size375
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928839.4797814-CDS-H-canaliculatus_F_contig11509:2829..32041622928839.4797814-CDS-H-canaliculatus_F_contig11509:2829..3204Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11509 2830..3204 +
1696845584.3704004-CDS-H-canaliculatus_F_contig11509:2829..32041696845584.3704004-CDS-H-canaliculatus_F_contig11509:2829..3204Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11509 2830..3204 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig11509.1334.1prot_H-canaliculatus_F_contig11509.1334.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig11509 2830..3204 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig11509.1334.1

>prot_H-canaliculatus_F_contig11509.1334.1 ID=prot_H-canaliculatus_F_contig11509.1334.1|Name=mRNA_H-canaliculatus_F_contig11509.1334.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=125bp
IAAAAAAGDPSSPEAVEAAAAAKKAQQQQLLLLSQLQAPPRGSLLFGLGG
ASAAESLMAARFAEHRAVVEEEHLRLEYAMAALDAAGARARRHWRRVSRL
SEAEASWVGEGEEEEEGGGREGRQR
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mRNA from alignment at H-canaliculatus_F_contig11509:2830..3204+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig11509.1334.1 ID=mRNA_H-canaliculatus_F_contig11509.1334.1|Name=mRNA_H-canaliculatus_F_contig11509.1334.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=375bp|location=Sequence derived from alignment at H-canaliculatus_F_contig11509:2830..3204+ (Hapterophycus canaliculatus Oshoro5f female)
ATCGCAGCGGCCGCGGCCGCGGGCGATCCGTCGTCTCCCGAAGCCGTCGA
AGCCGCGGCGGCGGCGAAGAAGGCCCAGCAGCAGCAGCTTCTGCTGCTGT
CGCAGCTGCAGGCCCCCCCGCGAGGTAGCCTCCTCTTCGGACTCGGCGGC
GCCTCGGCGGCCGAGAGCCTGATGGCCGCGAGGTTCGCGGAGCACCGGGC
GGTGGTGGAAGAGGAGCACCTCCGGCTGGAGTACGCCATGGCGGCCCTCG
ACGCCGCCGGGGCGAGGGCGCGGCGGCACTGGCGGAGGGTCAGCCGCCTA
TCGGAGGCGGAGGCGTCTTGGGTCGGCGAGGGGGAGGAGGAGGAGGAAGG
AGGGGGGCGCGAGGGCCGGCAGCGG
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig11509:2830..3204+

>mRNA_H-canaliculatus_F_contig11509.1334.1 ID=mRNA_H-canaliculatus_F_contig11509.1334.1|Name=mRNA_H-canaliculatus_F_contig11509.1334.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=750bp|location=Sequence derived from alignment at H-canaliculatus_F_contig11509:2830..3204+ (Hapterophycus canaliculatus Oshoro5f female)
ATCGCAGCGGCCGCGGCCGCGGGCGATCCGTCGTCTCCCGAAGCCGTCGA
AGCCGCGGCGGCGGCGAAGAAGGCCCAGCAGCAGCAGCTTCTGCTGCTGT
CGCAGCTGCAGGCCCCCCCGCGAGGTAGCCTCCTCTTCGGACTCGGCGGC
GCCTCGGCGGCCGAGAGCCTGATGGCCGCGAGGTTCGCGGAGCACCGGGC
GGTGGTGGAAGAGGAGCACCTCCGGCTGGAGTACGCCATGGCGGCCCTCG
ACGCCGCCGGGGCGAGGGCGCGGCGGCACTGGCGGAGGGTCAGCCGCCTA
TCGGAGGCGGAGGCGTCTTGGGTCGGCGAGGGGGAGGAGGAGGAGGAAGG
AGGGGGGCGCGAGGGCCGGCAGCGGATCGCAGCGGCCGCGGCCGCGGGCG
ATCCGTCGTCTCCCGAAGCCGTCGAAGCCGCGGCGGCGGCGAAGAAGGCC
CAGCAGCAGCAGCTTCTGCTGCTGTCGCAGCTGCAGGCCCCCCCGCGAGG
TAGCCTCCTCTTCGGACTCGGCGGCGCCTCGGCGGCCGAGAGCCTGATGG
CCGCGAGGTTCGCGGAGCACCGGGCGGTGGTGGAAGAGGAGCACCTCCGG
CTGGAGTACGCCATGGCGGCCCTCGACGCCGCCGGGGCGAGGGCGCGGCG
GCACTGGCGGAGGGTCAGCCGCCTATCGGAGGCGGAGGCGTCTTGGGTCG
GCGAGGGGGAGGAGGAGGAGGAAGGAGGGGGGCGCGAGGGCCGGCAGCGG
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