mRNA_H-canaliculatus_F_contig11509.1333.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig11509.1333.1
Unique NamemRNA_H-canaliculatus_F_contig11509.1333.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig11509.1333.1 vs. uniprot
Match: A0A6H5KST8_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KST8_9PHAE)

HSP 1 Score: 155 bits (393), Expect = 4.640e-41
Identity = 94/134 (70.15%), Postives = 96/134 (71.64%), Query Frame = 3 
Query:   60 PKASAAVSEMLDGASDCEDMDEIFKSLSAVLAEAQAESRQDFADFVPLFRNMGSGRRGSTSSSTANKRPSYDYAGAASTVGAWAGQGYGSAHMPASYTMPFGLPPPLLRARLPRRDTQAEFAWPAEPPAPHGPP 461
            PKASAAV+EML GAS CEDMDEIFKSLSAVLAEAQAESRQD+ADFVPLFRNMGSGRRGS                         G GY SAH PASYTMPFGLPPPL R RL  RD   EFAWPAEPP PHGPP
Sbjct: 1148 PKASAAVAEMLTGASGCEDMDEIFKSLSAVLAEAQAESRQDYADFVPLFRNMGSGRRGSXXXXXXXXXXXXXXXXXXXXXXXALG-GYASAHPPASYTMPFGLPPPLHRVRL-FRDA-GEFAWPAEPPGPHGPP 1278
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig11509.1333.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KST8_9PHAE4.640e-4170.15Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig11509contigH-canaliculatus_F_contig11509:1374..2786 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size463
Cds size462
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928839.408052-CDS-H-canaliculatus_F_contig11509:1373..15521622928839.408052-CDS-H-canaliculatus_F_contig11509:1373..1552Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11509 1374..1552 +
1696845584.3495088-CDS-H-canaliculatus_F_contig11509:1373..15521696845584.3495088-CDS-H-canaliculatus_F_contig11509:1373..1552Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11509 1374..1552 +
1622928839.4190977-CDS-H-canaliculatus_F_contig11509:2502..27851622928839.4190977-CDS-H-canaliculatus_F_contig11509:2502..2785Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11509 2503..2785 +
1696845584.3613098-CDS-H-canaliculatus_F_contig11509:2502..27851696845584.3613098-CDS-H-canaliculatus_F_contig11509:2502..2785Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11509 2503..2785 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig11509.1333.1prot_H-canaliculatus_F_contig11509.1333.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig11509 1374..2785 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig11509.1333.1

>prot_H-canaliculatus_F_contig11509.1333.1 ID=prot_H-canaliculatus_F_contig11509.1333.1|Name=mRNA_H-canaliculatus_F_contig11509.1333.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=154bp
QAGLQEGRPRRELRRRRSRPPKLRRRYPRCWTERATARTWTRSSSRSRRS
WRRRRRSPGRTLRISCRSSATWAAAGADPRLPQRPTSGPPTTTPEPRPPS
APGRARATAPPTCRRHTPCRSASRRRSSARAFPAGTLRPSSRGLRSPPRP
TGRP
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mRNA from alignment at H-canaliculatus_F_contig11509:1374..2786+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig11509.1333.1 ID=mRNA_H-canaliculatus_F_contig11509.1333.1|Name=mRNA_H-canaliculatus_F_contig11509.1333.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=1413bp|location=Sequence derived from alignment at H-canaliculatus_F_contig11509:1374..2786+ (Hapterophycus canaliculatus Oshoro5f female)
CAGGCAGGGCTGCAGGAGGGACGACCGCGGCGGGAGCTGCGTCGGCGGCG
ATCGAGACCCCCAAAGCTTCGGCGGCGGTATCCGAGATGCTGGACGGAGC
GAGCGACTGCGAGGACATGGACGAGATCTTCAAGTCGCTCTCGGCGGTCC
TGGCGGAGGCGCAGGCGGAGTCCCGGCAGGTCGGCGTTGGCTGTTGTTCT
GTGTCGCTGTTTCGTTGGTTGTATTTATTCTGCGGCTGTTCGTGCCTGCG
GGTGCTCTCGAGCAATTTCATCTCTGGCATGCTCCTCCGTGACTACAAGT
AGTCTCTTTGTGTTGTTTGCCCGCATCGCTTTCACTGCGAAACGTATGCT
CCGGAATCGTGACTTTTCGGCATGCTTGGGATTATAGGGGGGCGCCTGCC
GGCCCTTGCGTGCTCGAGGTACGTGACCTTTCTGCATCCTTGGGATTTTT
ATTTTATTTTTATTTTTTTAGAGTTGCGCTTGCCGGCCCTTGCGTGTTCG
AGGTAGGTGATCTTCTGACACACAAGATAGCCCCGGCGTGCTGTACTTCG
TGGTTCCTTTCTGTCCCCTATGCATCGCCTTCCATGCTTCCAGTCTTGCG
CGTGGAGCTTGTCTCATCAGTTTGTTTTTGAAGAAAAACATATCAACGCC
GCAGGAACACCTCCTGAGGTATGGTACGTCGTACGAGGCGTAGCTCGAGG
CGTCGCTCGAGACTTCCGTTGAGTTCCAAACAGTGAGGGTTCATCGTGTG
AAATTGTGAACAAAATGCATTTTTTTGTCGATCCAGGGTGTCGTTCTTGC
TTCGTCGACACGCACTCAAACGAAACTTTGCGTTCGTGATTCAAACCCAC
CGCACGGCGAGGAGAGATCGCCGTTCGTCACCTCACCCCCCCCCCCCCCC
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
CCCCCCCCCCCCCCCCCCCCGCCCCCCCCCCNNNNNNNNNNCCCAAAACG
AAACTGTGCGGTGGGGATTCCAACCCCCCGCCCGGCGGGGGGAGATCGCC
GTTCGTCCCCCCCCCCCCCCCCCCCCCCCCCCCCCGCCCCGCCCCGCCCG
CCGACCCCCCTTCCCATGAACCTTGACAGGACTTTGCGGATTTCGTGCCG
CTCTTCCGCAACATGGGCAGCGGCCGGCGCGGATCCACGTCTTCCTCAAC
GGCCAACAAGCGGCCCTCCTACGACTACGCCGGAGCCGCGTCCACCGTCG
GCGCCTGGGCGGGCCAGGGCTACGGCTCCGCCCACATGCCGGCGTCATAC
ACCATGCCGTTCGGCCTCCCGCCGCCGCTCCTCCGCGCGCGCCTTCCCCG
CCGGGACACTCAGGCCGAGTTCGCGTGGCCTGCGGAGCCCCCCGCGCCCC
ACGGGCCGCCCCG
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig11509:1374..2786+

>mRNA_H-canaliculatus_F_contig11509.1333.1 ID=mRNA_H-canaliculatus_F_contig11509.1333.1|Name=mRNA_H-canaliculatus_F_contig11509.1333.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=924bp|location=Sequence derived from alignment at H-canaliculatus_F_contig11509:1374..2786+ (Hapterophycus canaliculatus Oshoro5f female)
CAGGCAGGGCTGCAGGAGGGACGACCGCGGCGGGAGCTGCGTCGGCGGCG
ATCGAGACCCCCAAAGCTTCGGCGGCGGTATCCGAGATGCTGGACGGAGC
GAGCGACTGCGAGGACATGGACGAGATCTTCAAGTCGCTCTCGGCGGTCC
TGGCGGAGGCGCAGGCGGAGTCCCGGCAGCAGGCAGGGCTGCAGGAGGGA
CGACCGCGGCGGGAGCTGCGTCGGCGGCGATCGAGACCCCCAAAGCTTCG
GCGGCGGTATCCGAGATGCTGGACGGAGCGAGCGACTGCGAGGACATGGA
CGAGATCTTCAAGTCGCTCTCGGCGGTCCTGGCGGAGGCGCAGGCGGAGT
CCCGGCAGGACTTTGCGGATTTCGTGCCGCTCTTCCGCAACATGGGCAGC
GGCCGGCGCGGATCCACGTCTTCCTCAACGGCCAACAAGCGGCCCTCCTA
CGACTACGCCGGAGCCGCGTCCACCGTCGGCGCCTGGGCGGGCCAGGGCT
ACGGCTCCGCCCACATGCCGGCGTCATACACCATGCCGTTCGGCCTCCCG
CCGCCGCTCCTCCGCGCGCGCCTTCCCCGCCGGGACACTCAGGCCGAGTT
CGCGTGGCCTGCGGAGCCCCCCGCGCCCCACGGGCCGCCCCGACTTTGCG
GATTTCGTGCCGCTCTTCCGCAACATGGGCAGCGGCCGGCGCGGATCCAC
GTCTTCCTCAACGGCCAACAAGCGGCCCTCCTACGACTACGCCGGAGCCG
CGTCCACCGTCGGCGCCTGGGCGGGCCAGGGCTACGGCTCCGCCCACATG
CCGGCGTCATACACCATGCCGTTCGGCCTCCCGCCGCCGCTCCTCCGCGC
GCGCCTTCCCCGCCGGGACACTCAGGCCGAGTTCGCGTGGCCTGCGGAGC
CCCCCGCGCCCCACGGGCCGCCCC
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