mRNA_H-canaliculatus_F_contig11508.1332.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig11508.1332.1
Unique NamemRNA_H-canaliculatus_F_contig11508.1332.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig11508.1332.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig11508contigH-canaliculatus_F_contig11508:1103..3038 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size207
Cds size204
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928839.3627589-CDS-H-canaliculatus_F_contig11508:1102..12201622928839.3627589-CDS-H-canaliculatus_F_contig11508:1102..1220Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11508 1103..1220 +
1696845584.3251588-CDS-H-canaliculatus_F_contig11508:1102..12201696845584.3251588-CDS-H-canaliculatus_F_contig11508:1102..1220Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11508 1103..1220 +
1622928839.3756516-CDS-H-canaliculatus_F_contig11508:2951..30371622928839.3756516-CDS-H-canaliculatus_F_contig11508:2951..3037Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11508 2952..3037 +
1696845584.3335161-CDS-H-canaliculatus_F_contig11508:2951..30371696845584.3335161-CDS-H-canaliculatus_F_contig11508:2951..3037Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11508 2952..3037 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig11508.1332.1prot_H-canaliculatus_F_contig11508.1332.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig11508 1103..3037 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig11508.1332.1

>prot_H-canaliculatus_F_contig11508.1332.1 ID=prot_H-canaliculatus_F_contig11508.1332.1|Name=mRNA_H-canaliculatus_F_contig11508.1332.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=68bp
LLGLCGLRGEQRRVGGRWDRDVRSPPPRSCGGRESATYDGCLQASKPRHC
GAGPYLSQDCVRLLLKMG
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mRNA from alignment at H-canaliculatus_F_contig11508:1103..3038+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig11508.1332.1 ID=mRNA_H-canaliculatus_F_contig11508.1332.1|Name=mRNA_H-canaliculatus_F_contig11508.1332.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=1936bp|location=Sequence derived from alignment at H-canaliculatus_F_contig11508:1103..3038+ (Hapterophycus canaliculatus Oshoro5f female)
CTCCTTGGCTTGTGTGGGCTCCGAGGCGAACAAAGGCGGGTTGGAGGTCG
CTGGGATAGAGATGTGAGGTCGCCACCGCCACGTTCCTGTGGAGGACGAG
AGAGTGCAACATACGATGGTGAGAGCGTGGGACTGAAGTTATCATCTGGA
AGTGTTTTCTGTTCCTCATTGTCGTATGATACTACTGTAGTTGAATCGAG
TACAGTCCACGAGGAGGGAACTCTCAAAGCAGTGTGCACTTCTCTCGGAC
ATCGCGTCAGGCTTACTGACCACCTCCGTTGAGGTCACAAACGCGCCTCT
TCCACCCGATGGTCTGGAGCGTTCGTCAACTGTATGTACTGGACAGACGC
AAACGATGGGCCGCTCCTCGCCCTCGCCGTGCTGTGGAGGAAAACAGTAA
AACAGTACGATCACACCTGCGTACCAGTCTCCGCAGCATCTAAAACAACT
TTGCATCGCTCGACGTTCGGTGGCTGTCATAGGCGACCAGCAGAGCGACA
CGTGCCGCCTCCTGCGCAGGTAGAGCAGCTTTGTGCTCTCTCTCTGTAAT
TCCTAAAGTGGTACTGGGGTAGCACTCTTCTCAAAGGAGCAAGGAGAAAG
AGTACACTCTAGACTTGAGGTTGAGCCCAAAAAAACAATTTGAAGAAGCG
GCGAATCGAATCGAACTTGCTGCACGGACCTGTTCCACGCACACCCGACA
GAACCGCAACGTGTACTTCGTAGGATGGAACGCCAGTACTGCTGTACACG
CCAGCCCCCCGGGCGAACTCTTGGAACGTCCATAGAGTTTCAACGACAAC
GAGAGCACGGAACTTCCCCAGACCTGTTTCATTTTCTGGGTCGGATTATG
TCATCATGATGTTGAAACACCATGATCGTCCTTTCAATTGGAGAGATCCC
ACATCTATCTAGTGTAAAGTAAAAGAAAAGAGAGAGTGGAGAGGGAAAGC
GAGACTGCGACAAGTATAAGGGACGGCTGGCAACAGCAGTAAGACACGAG
AGTTGATGCGTGCGCGATGCACATCTTTGGGATCTGAACTCAGCAAATCC
GGTTTGGTTCTACAGGAGGTACCATGGTACGGTTTAGCTTTCGCCGGACG
TTTTAGCCCTGTGTGCCAGGGTACCGTCCAAAGATGTCCGACGGCACAGT
CTACATCCACCTTTTCTACATCTGCACGGAGTAGAAGGTTGATTTCCCTA
GTTCTTCCAGGGCTCGGCGGCATGCCTGCTGAGGACTCCCTGCATCGAGC
CGTAACGCGAGCACCGAGGTTTTAGGTCTGAGGGCGCCACCTGTCGAAAC
GCGGCGAAAGTACCACACGCGTCCTTGTTTCGGCCGAAGCGAAAATCGTG
ACGCTGTGGAACCGCCTGTACCTGCTGCTGTTGATGTTGATGTTGACGTT
CACGCTTGATGTTAGATTGATGAAAGGGAGAGAGTCCGACACCCTACCGG
CCGCCCGCCAGATGCCGGCGTAGGGCTTCCCCGAGCTCAGCAACAAGTGT
GGGAAAGAGTGCCCCCCGCTGCGTTTTCGGAGGCACGTGACAGTCCGAGA
GAAGTCCTCCTACCAGAGACTCATCAAAGCGCGGCGAGTAAATCGTTCAT
GCGTGCCCTTGGTGTTCCATCTTCTTGGAGCATAGGCGCCGGCGGGTTTC
CGTAGGCAGCAGCAAAGCGCAGTTGTCCTAGCCGATGCGCCACAGGCGGG
GCATGCCAATTACAAGGTAGGTGATGCTGCCTCGCTCGTCCTACACCAGA
AGAGCCTGCTGCTCCTCGCTGCCGCTGTACAAAGTCTGTGAGCGAAAGAA
GCGAAACACTGCCGGTTGGCCTGGTCGCACACACATGTTGAATTTCCAGG
TTGCCTCCAAGCCTCCAAACCGAGGCATTGTGGAGCAGGACCCTATCTGT
CCCAAGATTGCGTGCGGCTGCTCTTGAAGATGGGGG
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig11508:1103..3038+

>mRNA_H-canaliculatus_F_contig11508.1332.1 ID=mRNA_H-canaliculatus_F_contig11508.1332.1|Name=mRNA_H-canaliculatus_F_contig11508.1332.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=408bp|location=Sequence derived from alignment at H-canaliculatus_F_contig11508:1103..3038+ (Hapterophycus canaliculatus Oshoro5f female)
CTCCTTGGCTTGTGTGGGCTCCGAGGCGAACAAAGGCGGGTTGGAGGTCG
CTGGGATAGAGATGTGAGGTCGCCACCGCCACGTTCCTGTGGAGGACGAG
AGAGTGCAACATACGATGCTCCTTGGCTTGTGTGGGCTCCGAGGCGAACA
AAGGCGGGTTGGAGGTCGCTGGGATAGAGATGTGAGGTCGCCACCGCCAC
GTTCCTGTGGAGGACGAGAGAGTGCAACATACGATGGTTGCCTCCAAGCC
TCCAAACCGAGGCATTGTGGAGCAGGACCCTATCTGTCCCAAGATTGCGT
GCGGCTGCTCTTGAAGATGGGGGTTGCCTCCAAGCCTCCAAACCGAGGCA
TTGTGGAGCAGGACCCTATCTGTCCCAAGATTGCGTGCGGCTGCTCTTGA
AGATGGGG
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