mRNA_H-canaliculatus_F_contig11506.1331.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig11506.1331.1
Unique NamemRNA_H-canaliculatus_F_contig11506.1331.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig11506.1331.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig11506contigH-canaliculatus_F_contig11506:2866..3972 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size1011
Cds size1011
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928839.2860067-CDS-H-canaliculatus_F_contig11506:2865..32451622928839.2860067-CDS-H-canaliculatus_F_contig11506:2865..3245Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11506 2866..3245 -
1696845584.3025632-CDS-H-canaliculatus_F_contig11506:2865..32451696845584.3025632-CDS-H-canaliculatus_F_contig11506:2865..3245Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11506 2866..3245 -
1622928839.3033948-CDS-H-canaliculatus_F_contig11506:3341..39721622928839.3033948-CDS-H-canaliculatus_F_contig11506:3341..3972Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11506 3342..3972 -
1696845584.3128107-CDS-H-canaliculatus_F_contig11506:3341..39721696845584.3128107-CDS-H-canaliculatus_F_contig11506:3341..3972Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11506 3342..3972 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig11506.1331.1prot_H-canaliculatus_F_contig11506.1331.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig11506 2866..3972 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig11506.1331.1

>prot_H-canaliculatus_F_contig11506.1331.1 ID=prot_H-canaliculatus_F_contig11506.1331.1|Name=mRNA_H-canaliculatus_F_contig11506.1331.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=337bp
QSRERFLAAFSVDVTGIRRQLDRLRNETHRPQTSAPTAGATTPTLTALTP
TVGTTAAWSRGGEAAEAGKQAAAAAASPGESSGGGGGGSTSPPVVTVLHL
VVKAAAASVLEVMPPSTAAFCSSPSSSSSSSVVETSFRRGGGGGGGGGVV
RGGRAGTRVACLSSSSRTGRAGKRAAALVPSPASGGPPVSPASPPAVLRT
ATSSTDELSSRGGRGGGGRGGGGGEGGAVVIVEGAEEKSVGAIAAEIAAA
AAAAAAAAARSGGGRGGSPPLLHPEAVQRLRQYGGMCNSDSDGGGGGGGS
SEPGDRARAVPLLHPGAALGILGRDPSEVCGGGGGGG
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mRNA from alignment at H-canaliculatus_F_contig11506:2866..3972-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig11506.1331.1 ID=mRNA_H-canaliculatus_F_contig11506.1331.1|Name=mRNA_H-canaliculatus_F_contig11506.1331.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=1107bp|location=Sequence derived from alignment at H-canaliculatus_F_contig11506:2866..3972- (Hapterophycus canaliculatus Oshoro5f female)
CAGAGCCGGGAACGGTTCTTGGCCGCCTTCTCGGTGGACGTGACGGGCAT
CCGGAGGCAGCTGGACCGCCTGCGCAACGAGACCCATCGGCCCCAGACCT
CGGCGCCAACAGCAGGAGCAACAACGCCAACACTAACAGCGCTGACGCCA
ACAGTAGGTACTACGGCGGCGTGGTCGCGGGGCGGCGAGGCGGCGGAGGC
TGGAAAGCAGGCGGCGGCGGCGGCGGCGTCGCCAGGGGAAAGCAGCGGCG
GCGGCGGCGGCGGCTCGACCTCTCCCCCCGTGGTGACCGTGCTGCATCTG
GTGGTGAAGGCCGCGGCGGCTTCCGTCCTGGAGGTCATGCCACCATCGAC
GGCGGCGTTCTGTTCGTCGCCGAGTTCCTCTTCCTCTTCCTCCGTCGTCG
AAACGAGCTTCCGGCGAGGAGGAGGAGGAGGAGGAGGAGGTGGTGTCGTT
CGTGGCGGCAGGGCGGGAACGCGCGTCGCGTGCTTGTCGAGCAGCAGCAG
GACCGGCCGCGCCGGGAAAAGAGCGGCGGCGCTGGTACCCTCCCCGGCGT
CGGGGGGACCCCCGGTCTCCCCTGCGTCTCCCCCAGCGGTCCTGAGGACT
GCTACGTCTTCCACCGATGAACTCAGTAGCAGTAGCAGCAGCAGTAGCAG
CAGCAGCAGCAGCAGCAGTAGCGGCGGTGGCGGCACTTTCAACAAGAAGG
AAAGCATCGGAGAAGGAGGAGGAGGAGGAGGAGGAAGAGGAGGAGGAGGA
AGAGGAGGAGGAGGAGGAGAGGGAGGCGCCGTGGTCATCGTCGAGGGGGC
GGAAGAGAAGAGCGTCGGCGCGATCGCTGCAGAAATAGCGGCGGCGGCGG
CGGCGGCGGCGGCGGCGGCAGCAAGATCAGGAGGAGGGCGGGGGGGGTCG
CCGCCGCTCTTGCACCCCGAAGCTGTCCAGAGATTGCGACAGTACGGCGG
GATGTGCAACTCCGACAGCGACGGAGGCGGGGGCGGAGGCGGCTCCAGCG
AACCTGGAGACCGGGCACGTGCGGTTCCTCTGCTCCACCCGGGTGCAGCG
TTGGGCATCCTCGGAAGGGACCCGTCGGAGGTGTGCGGCGGCGGCGGCGG
CGGCGGC
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig11506:2866..3972-

>mRNA_H-canaliculatus_F_contig11506.1331.1 ID=mRNA_H-canaliculatus_F_contig11506.1331.1|Name=mRNA_H-canaliculatus_F_contig11506.1331.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=2022bp|location=Sequence derived from alignment at H-canaliculatus_F_contig11506:2866..3972- (Hapterophycus canaliculatus Oshoro5f female)
CAGAGCCGGGAACGGTTCTTGGCCGCCTTCTCGGTGGACGTGACGGGCAT
CCGGAGGCAGCTGGACCGCCTGCGCAACGAGACCCATCGGCCCCAGACCT
CGGCGCCAACAGCAGGAGCAACAACGCCAACACTAACAGCGCTGACGCCA
ACAGTAGGTACTACGGCGGCGTGGTCGCGGGGCGGCGAGGCGGCGGAGGC
TGGAAAGCAGGCGGCGGCGGCGGCGGCGTCGCCAGGGGAAAGCAGCGGCG
GCGGCGGCGGCGGCTCGACCTCTCCCCCCGTGGTGACCGTGCTGCATCTG
GTGGTGAAGGCCGCGGCGGCTTCCGTCCTGGAGGTCATGCCACCATCGAC
GGCGGCGTTCTGTTCGTCGCCGAGTTCCTCTTCCTCTTCCTCCGTCGTCG
AAACGAGCTTCCGGCGAGGAGGAGGAGGAGGAGGAGGAGGTGGTGTCGTT
CGTGGCGGCAGGGCGGGAACGCGCGTCGCGTGCTTGTCGAGCAGCAGCAG
GACCGGCCGCGCCGGGAAAAGAGCGGCGGCGCTGGTACCCTCCCCGGCGT
CGGGGGGACCCCCGGTCTCCCCTGCGTCTCCCCCAGCGGTCCTGAGGACT
GCTACGTCTTCCACCGATGAACTCAGTAGCACAGAGCCGGGAACGGTTCT
TGGCCGCCTTCTCGGTGGACGTGACGGGCATCCGGAGGCAGCTGGACCGC
CTGCGCAACGAGACCCATCGGCCCCAGACCTCGGCGCCAACAGCAGGAGC
AACAACGCCAACACTAACAGCGCTGACGCCAACAGTAGGTACTACGGCGG
CGTGGTCGCGGGGCGGCGAGGCGGCGGAGGCTGGAAAGCAGGCGGCGGCG
GCGGCGGCGTCGCCAGGGGAAAGCAGCGGCGGCGGCGGCGGCGGCTCGAC
CTCTCCCCCCGTGGTGACCGTGCTGCATCTGGTGGTGAAGGCCGCGGCGG
CTTCCGTCCTGGAGGTCATGCCACCATCGACGGCGGCGTTCTGTTCGTCG
CCGAGTTCCTCTTCCTCTTCCTCCGTCGTCGAAACGAGCTTCCGGCGAGG
AGGAGGAGGAGGAGGAGGAGGTGGTGTCGTTCGTGGCGGCAGGGCGGGAA
CGCGCGTCGCGTGCTTGTCGAGCAGCAGCAGGACCGGCCGCGCCGGGAAA
AGAGCGGCGGCGCTGGTACCCTCCCCGGCGTCGGGGGGACCCCCGGTCTC
CCCTGCGTCTCCCCCAGCGGTCCTGAGGACTGCTACGTCTTCCACCGATG
AACTCAGTAGCAGAGGAGGAAGAGGAGGAGGAGGAAGAGGAGGAGGAGGA
GGAGAGGGAGGCGCCGTGGTCATCGTCGAGGGGGCGGAAGAGAAGAGCGT
CGGCGCGATCGCTGCAGAAATAGCGGCGGCGGCGGCGGCGGCGGCGGCGG
CGGCAGCAAGATCAGGAGGAGGGCGGGGGGGGTCGCCGCCGCTCTTGCAC
CCCGAAGCTGTCCAGAGATTGCGACAGTACGGCGGGATGTGCAACTCCGA
CAGCGACGGAGGCGGGGGCGGAGGCGGCTCCAGCGAACCTGGAGACCGGG
CACGTGCGGTTCCTCTGCTCCACCCGGGTGCAGCGTTGGGCATCCTCGGA
AGGGACCCGTCGGAGGTGTGCGGCGGCGGCGGCGGCGGCGGCGAGGAGGA
AGAGGAGGAGGAGGAAGAGGAGGAGGAGGAGGAGAGGGAGGCGCCGTGGT
CATCGTCGAGGGGGCGGAAGAGAAGAGCGTCGGCGCGATCGCTGCAGAAA
TAGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCAGCAAGATCAGGAGGA
GGGCGGGGGGGGTCGCCGCCGCTCTTGCACCCCGAAGCTGTCCAGAGATT
GCGACAGTACGGCGGGATGTGCAACTCCGACAGCGACGGAGGCGGGGGCG
GAGGCGGCTCCAGCGAACCTGGAGACCGGGCACGTGCGGTTCCTCTGCTC
CACCCGGGTGCAGCGTTGGGCATCCTCGGAAGGGACCCGTCGGAGGTGTG
CGGCGGCGGCGGCGGCGGCGGC
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