mRNA_H-canaliculatus_F_contig11498.1322.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig11498.1322.1
Unique NamemRNA_H-canaliculatus_F_contig11498.1322.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig11498.1322.1 vs. uniprot
Match: D8LEW9_ECTSI (USP domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEW9_ECTSI)

HSP 1 Score: 126 bits (316), Expect = 1.640e-31
Identity = 92/105 (87.62%), Postives = 99/105 (94.29%), Query Frame = 2 
Query:    2 SGERNPWALVERVDRAKDNAFRCCGVIESSAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAMAANMEWNPQFAPRLQEAEGALLEWLTELTMALHGLTFQFTL 316
            S ERNPWAL+ERVDRA+DNAF+CCGVIE+SA XXXXXXXXXXXXXXXXXXXXXXXXXXXX  +MA NMEWNPQFAPRLQEAE A++EWLTELTMALHGLTFQFTL
Sbjct:  403 SAERNPWALMERVDRARDNAFKCCGVIEASAGXXXXXXXXXXXXXXXXXXXXXXXXXXXX--SMAGNMEWNPQFAPRLQEAEAAIVEWLTELTMALHGLTFQFTL 505
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BLAST of mRNA_H-canaliculatus_F_contig11498.1322.1 vs. uniprot
Match: A0A6H5KBH4_9PHAE (USP domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBH4_9PHAE)

HSP 1 Score: 120 bits (302), Expect = 1.280e-29
Identity = 86/105 (81.90%), Postives = 94/105 (89.52%), Query Frame = 2 
Query:    2 SGERNPWALVERVDRAKDNAFRCCGVIESSAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAMAANMEWNPQFAPRLQEAEGALLEWLTELTMALHGLTFQFTL 316
            S ERNPWAL+ERVDRA+DNA +CCGVIE SAXXXXXXXXXXXXXXXXXXXXXXXXX      +MA N+EWNPQFAPRLQEAE A++EWLT+LTMALHGLTFQFTL
Sbjct:  400 SAERNPWALMERVDRARDNAMKCCGVIEDSAXXXXXXXXXXXXXXXXXXXXXXXXX------SMAGNIEWNPQFAPRLQEAEAAIVEWLTDLTMALHGLTFQFTL 498
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig11498.1322.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LEW9_ECTSI1.640e-3187.62USP domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5KBH4_9PHAE1.280e-2981.90USP domain-containing protein n=1 Tax=Ectocarpus s... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig11498contigH-canaliculatus_F_contig11498:3397..3715 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size319
Cds size318
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928837.15571-CDS-H-canaliculatus_F_contig11498:3396..37141622928837.15571-CDS-H-canaliculatus_F_contig11498:3396..3714Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11498 3397..3714 +
1696845583.1710255-CDS-H-canaliculatus_F_contig11498:3396..37141696845583.1710255-CDS-H-canaliculatus_F_contig11498:3396..3714Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11498 3397..3714 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig11498.1322.1prot_H-canaliculatus_F_contig11498.1322.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig11498 3397..3714 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig11498.1322.1

>prot_H-canaliculatus_F_contig11498.1322.1 ID=prot_H-canaliculatus_F_contig11498.1322.1|Name=mRNA_H-canaliculatus_F_contig11498.1322.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=106bp
QRGAKSVGPSGAGGSRQGQRIQVLRGHRVERGGQQRQQRRPVGVERRNER
GLLGLRFLFLLLRDGGEHGVEPAVCSAPAGGRGGAPGVADGAHHGAARPD
LPVHPR
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mRNA from alignment at H-canaliculatus_F_contig11498:3397..3715+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig11498.1322.1 ID=mRNA_H-canaliculatus_F_contig11498.1322.1|Name=mRNA_H-canaliculatus_F_contig11498.1322.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=319bp|location=Sequence derived from alignment at H-canaliculatus_F_contig11498:3397..3715+ (Hapterophycus canaliculatus Oshoro5f female)
CAGCGGGGAGCGAAATCCGTGGGCCCTAGTGGAGCGGGTGGATCGCGCCA
AGGACAACGCATTCAGGTGCTGCGGGGTCATCGAGTCGAGCGCGGGGGGC
AGCAGCGGCAGCAGCGGCGACCTGTTGGAGTCGAGCGGCGGAATGAACGG
GGGCTCCTCGGCCTCCGCTTCCTCTTCCTCCTCCTCCGCGATGGCGGCGA
ACATGGAGTGGAACCCGCAGTTTGCTCCGCGCCTGCAGGAGGCCGAGGGG
GCGCTCCTGGAGTGGCTGACGGAGCTCACCATGGCGCTGCACGGCCTGAC
CTTCCAGTTCACCCTCGCG
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig11498:3397..3715+

>mRNA_H-canaliculatus_F_contig11498.1322.1 ID=mRNA_H-canaliculatus_F_contig11498.1322.1|Name=mRNA_H-canaliculatus_F_contig11498.1322.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=636bp|location=Sequence derived from alignment at H-canaliculatus_F_contig11498:3397..3715+ (Hapterophycus canaliculatus Oshoro5f female)
CAGCGGGGAGCGAAATCCGTGGGCCCTAGTGGAGCGGGTGGATCGCGCCA
AGGACAACGCATTCAGGTGCTGCGGGGTCATCGAGTCGAGCGCGGGGGGC
AGCAGCGGCAGCAGCGGCGACCTGTTGGAGTCGAGCGGCGGAATGAACGG
GGGCTCCTCGGCCTCCGCTTCCTCTTCCTCCTCCTCCGCGATGGCGGCGA
ACATGGAGTGGAACCCGCAGTTTGCTCCGCGCCTGCAGGAGGCCGAGGGG
GCGCTCCTGGAGTGGCTGACGGAGCTCACCATGGCGCTGCACGGCCTGAC
CTTCCAGTTCACCCTCGCCAGCGGGGAGCGAAATCCGTGGGCCCTAGTGG
AGCGGGTGGATCGCGCCAAGGACAACGCATTCAGGTGCTGCGGGGTCATC
GAGTCGAGCGCGGGGGGCAGCAGCGGCAGCAGCGGCGACCTGTTGGAGTC
GAGCGGCGGAATGAACGGGGGCTCCTCGGCCTCCGCTTCCTCTTCCTCCT
CCTCCGCGATGGCGGCGAACATGGAGTGGAACCCGCAGTTTGCTCCGCGC
CTGCAGGAGGCCGAGGGGGCGCTCCTGGAGTGGCTGACGGAGCTCACCAT
GGCGCTGCACGGCCTGACCTTCCAGTTCACCCTCGC
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