mRNA_H-canaliculatus_F_contig11495.1319.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig11495.1319.1
Unique NamemRNA_H-canaliculatus_F_contig11495.1319.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
[Close]
BLAST of mRNA_H-canaliculatus_F_contig11495.1319.1 vs. uniprot
Match: A0A6H5KTA2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTA2_9PHAE)

HSP 1 Score: 107 bits (266), Expect = 1.120e-25
Identity = 46/53 (86.79%), Postives = 50/53 (94.34%), Query Frame = 1 
Query:    4 IKRGRKMNCTACKRRGATIGCLVESCKNSYHFPCAQETGWCFSTAQVSFHCKK 162
            IKRGRKMNCT+CKRRGATIGCLVESCKNSYHFPCA+ TGW FS AQV+FHCK+
Sbjct: 1118 IKRGRKMNCTSCKRRGATIGCLVESCKNSYHFPCAEATGWSFSKAQVAFHCKR 1170
[Close]
BLAST of mRNA_H-canaliculatus_F_contig11495.1319.1 vs. uniprot
Match: D0MZ73_PHYIT (Uncharacterized protein n=1 Tax=Phytophthora infestans (strain T30-4) TaxID=403677 RepID=D0MZ73_PHYIT)

HSP 1 Score: 66.6 bits (161), Expect = 1.840e-11
Identity = 28/51 (54.90%), Postives = 36/51 (70.59%), Query Frame = 1 
Query:    4 IKRGRKMNCTACKRRGATIGCLVESCKNSYHFPCAQETGWCFSTAQVSFHC 156
            I+RGR +NC AC +RGATIGC + +C+NSYH+ CA   GW  S  Q+ F C
Sbjct: 1079 IRRGRSLNCVACTKRGATIGCTISACRNSYHWKCAINLGW--SVDQMHFFC 1127
[Close]
BLAST of mRNA_H-canaliculatus_F_contig11495.1319.1 vs. uniprot
Match: A0A6A4RV63_SCOMX (PHD-type domain-containing protein n=7 Tax=Scophthalmus maximus TaxID=52904 RepID=A0A6A4RV63_SCOMX)

HSP 1 Score: 65.1 bits (157), Expect = 6.350e-11
Identity = 26/39 (66.67%), Postives = 31/39 (79.49%), Query Frame = 1 
Query:    4 IKRGRKMNCTACKRRGATIGCLVESCKNSYHFPCAQETG 120
            +KRGRK+NC  CKR+GAT GC V SCK SYH+PCA + G
Sbjct:   66 VKRGRKLNCNKCKRKGATAGCEVRSCKKSYHYPCAVQRG 104
[Close]
BLAST of mRNA_H-canaliculatus_F_contig11495.1319.1 vs. uniprot
Match: A0A662Y5I9_9STRA (Uncharacterized protein n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662Y5I9_9STRA)

HSP 1 Score: 64.7 bits (156), Expect = 8.770e-11
Identity = 27/51 (52.94%), Postives = 35/51 (68.63%), Query Frame = 1 
Query:    4 IKRGRKMNCTACKRRGATIGCLVESCKNSYHFPCAQETGWCFSTAQVSFHC 156
            I+RGR ++C  C +RGAT+GC V SC+NSYH+ CA   GW  S  Q+ F C
Sbjct: 1323 IRRGRSLDCVGCHKRGATVGCTVPSCRNSYHWKCAINCGW--SMDQIQFFC 1371
[Close]
BLAST of mRNA_H-canaliculatus_F_contig11495.1319.1 vs. uniprot
Match: V9F004_PHYPR (Uncharacterized protein n=16 Tax=Phytophthora TaxID=4783 RepID=V9F004_PHYPR)

HSP 1 Score: 64.7 bits (156), Expect = 8.770e-11
Identity = 27/51 (52.94%), Postives = 36/51 (70.59%), Query Frame = 1 
Query:    4 IKRGRKMNCTACKRRGATIGCLVESCKNSYHFPCAQETGWCFSTAQVSFHC 156
            I+RGR ++C AC +RGATIGC + +C+NSYH+ CA   GW  S  Q+ F C
Sbjct: 1372 IRRGRSLSCVACTKRGATIGCTISACRNSYHWKCAINLGW--SVDQMHFFC 1420
[Close]
BLAST of mRNA_H-canaliculatus_F_contig11495.1319.1 vs. uniprot
Match: G4YIG9_PHYSP (Uncharacterized protein n=1 Tax=Phytophthora sojae (strain P6497) TaxID=1094619 RepID=G4YIG9_PHYSP)

HSP 1 Score: 63.5 bits (153), Expect = 2.240e-10
Identity = 27/51 (52.94%), Postives = 35/51 (68.63%), Query Frame = 1 
Query:    4 IKRGRKMNCTACKRRGATIGCLVESCKNSYHFPCAQETGWCFSTAQVSFHC 156
            I+RGR + C AC +RGATIGC + +C+NSYH+ CA   GW  S  Q+ F C
Sbjct: 1049 IRRGRSLTCVACNKRGATIGCTIAACRNSYHWKCAITYGW--SVDQMHFFC 1097
[Close]
BLAST of mRNA_H-canaliculatus_F_contig11495.1319.1 vs. uniprot
Match: A0A329T1R7_9STRA (Uncharacterized protein n=2 Tax=Phytophthora TaxID=4783 RepID=A0A329T1R7_9STRA)

HSP 1 Score: 63.5 bits (153), Expect = 2.240e-10
Identity = 27/51 (52.94%), Postives = 35/51 (68.63%), Query Frame = 1 
Query:    4 IKRGRKMNCTACKRRGATIGCLVESCKNSYHFPCAQETGWCFSTAQVSFHC 156
            I+RGR + C AC +RGATIGC + +C+NSYH+ CA   GW  S  Q+ F C
Sbjct: 1372 IRRGRSLACVACTKRGATIGCTINACRNSYHWKCAINLGW--SVDQMHFFC 1420
[Close]
BLAST of mRNA_H-canaliculatus_F_contig11495.1319.1 vs. uniprot
Match: A0A6A3MDY0_9STRA (Uncharacterized protein n=8 Tax=Phytophthora TaxID=4783 RepID=A0A6A3MDY0_9STRA)

HSP 1 Score: 63.5 bits (153), Expect = 2.240e-10
Identity = 27/51 (52.94%), Postives = 34/51 (66.67%), Query Frame = 1 
Query:    4 IKRGRKMNCTACKRRGATIGCLVESCKNSYHFPCAQETGWCFSTAQVSFHC 156
            I+RGR + C  C +RGATIGC + SC+NSYH+ CA   GW  S  Q+ F C
Sbjct: 1419 IRRGRSLTCVGCNKRGATIGCTIASCRNSYHWKCAINFGW--SVDQMHFFC 1467
[Close]
BLAST of mRNA_H-canaliculatus_F_contig11495.1319.1 vs. uniprot
Match: A0A225WPB5_9STRA (Uncharacterized protein n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225WPB5_9STRA)

HSP 1 Score: 63.2 bits (152), Expect = 3.060e-10
Identity = 27/51 (52.94%), Postives = 35/51 (68.63%), Query Frame = 1 
Query:    4 IKRGRKMNCTACKRRGATIGCLVESCKNSYHFPCAQETGWCFSTAQVSFHC 156
            I+RGR + C AC +RGATIGC + +C+NSYH+ CA   GW  S  Q+ F C
Sbjct: 1043 IRRGRSLTCVACIKRGATIGCTINACRNSYHWKCAINFGW--SVDQMHFFC 1091
[Close]
BLAST of mRNA_H-canaliculatus_F_contig11495.1319.1 vs. uniprot
Match: M4B1M4_HYAAE (Uncharacterized protein n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4B1M4_HYAAE)

HSP 1 Score: 63.2 bits (152), Expect = 3.060e-10
Identity = 27/51 (52.94%), Postives = 35/51 (68.63%), Query Frame = 1 
Query:    4 IKRGRKMNCTACKRRGATIGCLVESCKNSYHFPCAQETGWCFSTAQVSFHC 156
            I+RGR + C AC +RGATIGC + +C+NSYH+ CA   GW  S  Q+ F C
Sbjct: 1352 IRRGRSLVCVACNKRGATIGCTIAACRNSYHWKCAISFGW--SVDQMQFFC 1400
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig11495.1319.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KTA2_9PHAE1.120e-2586.79Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D0MZ73_PHYIT1.840e-1154.90Uncharacterized protein n=1 Tax=Phytophthora infes... [more]
A0A6A4RV63_SCOMX6.350e-1166.67PHD-type domain-containing protein n=7 Tax=Scophth... [more]
A0A662Y5I9_9STRA8.770e-1152.94Uncharacterized protein n=2 Tax=Nothophytophthora ... [more]
V9F004_PHYPR8.770e-1152.94Uncharacterized protein n=16 Tax=Phytophthora TaxI... [more]
G4YIG9_PHYSP2.240e-1052.94Uncharacterized protein n=1 Tax=Phytophthora sojae... [more]
A0A329T1R7_9STRA2.240e-1052.94Uncharacterized protein n=2 Tax=Phytophthora TaxID... [more]
A0A6A3MDY0_9STRA2.240e-1052.94Uncharacterized protein n=8 Tax=Phytophthora TaxID... [more]
A0A225WPB5_9STRA3.060e-1052.94Uncharacterized protein n=1 Tax=Phytophthora megak... [more]
M4B1M4_HYAAE3.060e-1052.94Uncharacterized protein n=1 Tax=Hyaloperonospora a... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig11495contigH-canaliculatus_F_contig11495:172..336 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size165
Cds size144
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928836.9715168-UTR-H-canaliculatus_F_contig11495:171..1921622928836.9715168-UTR-H-canaliculatus_F_contig11495:171..192Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig11495 172..192 +
1696845583.1149719-UTR-H-canaliculatus_F_contig11495:171..1921696845583.1149719-UTR-H-canaliculatus_F_contig11495:171..192Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig11495 172..192 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928836.9889426-CDS-H-canaliculatus_F_contig11495:192..3361622928836.9889426-CDS-H-canaliculatus_F_contig11495:192..336Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11495 193..336 +
1696845583.1235209-CDS-H-canaliculatus_F_contig11495:192..3361696845583.1235209-CDS-H-canaliculatus_F_contig11495:192..336Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11495 193..336 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig11495.1319.1prot_H-canaliculatus_F_contig11495.1319.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig11495 193..336 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig11495.1319.1

>prot_H-canaliculatus_F_contig11495.1319.1 ID=prot_H-canaliculatus_F_contig11495.1319.1|Name=mRNA_H-canaliculatus_F_contig11495.1319.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=48bp
MNCTACKRRGATIGCLVESCKNSYHFPCAQETGWCFSTAQVSFHCKK*
back to top

mRNA from alignment at H-canaliculatus_F_contig11495:172..336+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig11495.1319.1 ID=mRNA_H-canaliculatus_F_contig11495.1319.1|Name=mRNA_H-canaliculatus_F_contig11495.1319.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=165bp|location=Sequence derived from alignment at H-canaliculatus_F_contig11495:172..336+ (Hapterophycus canaliculatus Oshoro5f female)
AAGATCAAGCGGGGGAGGAAGATGAACTGCACGGCGTGCAAGCGGCGGGG
GGCCACGATCGGGTGCCTGGTGGAGTCGTGCAAGAACTCGTACCACTTCC
CCTGCGCCCAGGAGACGGGCTGGTGTTTTTCCACGGCCCAAGTGTCCTTC
CACTGCAAGAAGTGA
back to top

Coding sequence (CDS) from alignment at H-canaliculatus_F_contig11495:172..336+

>mRNA_H-canaliculatus_F_contig11495.1319.1 ID=mRNA_H-canaliculatus_F_contig11495.1319.1|Name=mRNA_H-canaliculatus_F_contig11495.1319.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=288bp|location=Sequence derived from alignment at H-canaliculatus_F_contig11495:172..336+ (Hapterophycus canaliculatus Oshoro5f female)
ATGAACTGCACGGCGTGCAAGCGGCGGGGGGCCACGATCGGGTGCCTGGT
GGAGTCGTGCAAGAACTCGTACCACTTCCCCTGCGCCCAGGAGACGGGCT
GGTGTTTTTCCACGGCCCAAGTGTCCTTCCACTGCAAGAAGTGAATGAAC
TGCACGGCGTGCAAGCGGCGGGGGGCCACGATCGGGTGCCTGGTGGAGTC
GTGCAAGAACTCGTACCACTTCCCCTGCGCCCAGGAGACGGGCTGGTGTT
TTTCCACGGCCCAAGTGTCCTTCCACTGCAAGAAGTGA
back to top