mRNA_H-canaliculatus_F_contig11454.1286.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig11454.1286.1
Unique NamemRNA_H-canaliculatus_F_contig11454.1286.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig11454.1286.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig11454contigH-canaliculatus_F_contig11454:1186..1564 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size380
Cds size378
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928829.6606994-CDS-H-canaliculatus_F_contig11454:1185..15631622928829.6606994-CDS-H-canaliculatus_F_contig11454:1185..1563Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11454 1186..1563 +
1696845581.2710752-CDS-H-canaliculatus_F_contig11454:1185..15631696845581.2710752-CDS-H-canaliculatus_F_contig11454:1185..1563Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11454 1186..1563 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig11454.1286.1prot_H-canaliculatus_F_contig11454.1286.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig11454 1186..1563 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig11454.1286.1

>prot_H-canaliculatus_F_contig11454.1286.1 ID=prot_H-canaliculatus_F_contig11454.1286.1|Name=mRNA_H-canaliculatus_F_contig11454.1286.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=126bp
NTIDVLGSGSRLIDSEVMYIGCGARDVHRIATQKVAFRTRTRLHEGITCG
HVAPHLAQQCKNILPVELSLSSPHSCCTALSPRTQQGKTQVGLSFQARSS
RDTSTSSLLPPCHGIRARLMHPSCRQ
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mRNA from alignment at H-canaliculatus_F_contig11454:1186..1564+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig11454.1286.1 ID=mRNA_H-canaliculatus_F_contig11454.1286.1|Name=mRNA_H-canaliculatus_F_contig11454.1286.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=379bp|location=Sequence derived from alignment at H-canaliculatus_F_contig11454:1186..1564+ (Hapterophycus canaliculatus Oshoro5f female)
AACACGATTGATGTGTTGGGTTCCGGCTCTCGTCTTATTGACAGTGAAGT
CATGTACATCGGTTGTGGAGCACGCGATGTGCACAGGATCGCAACCCAAA
AGGTGGCGTTTCGAACGAGAACAAGGCTTCATGAAGGCATCACGTGTGGC
CATGTCGCCCCGCATCTCGCACAGCAGTGCAAAAACATACTCCCAGTAGA
ATTATCTCTTTCTTCACCGCACTCATGCTGTACAGCATTATCACCTCGCA
CACAGCAGGGCAAAACTCAAGTCGGCCTATCATTTCAGGCCCGCAGCTCG
CGCGACACATCAACGTCCTCGCTGCTTCCACCATGCCATGGCATCCGAGC
ACGGTTGATGCACCCCTCGTGTAGGCAGT
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig11454:1186..1564+

>mRNA_H-canaliculatus_F_contig11454.1286.1 ID=mRNA_H-canaliculatus_F_contig11454.1286.1|Name=mRNA_H-canaliculatus_F_contig11454.1286.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=756bp|location=Sequence derived from alignment at H-canaliculatus_F_contig11454:1186..1564+ (Hapterophycus canaliculatus Oshoro5f female)
AACACGATTGATGTGTTGGGTTCCGGCTCTCGTCTTATTGACAGTGAAGT
CATGTACATCGGTTGTGGAGCACGCGATGTGCACAGGATCGCAACCCAAA
AGGTGGCGTTTCGAACGAGAACAAGGCTTCATGAAGGCATCACGTGTGGC
CATGTCGCCCCGCATCTCGCACAGCAGTGCAAAAACATACTCCCAGTAGA
ATTATCTCTTTCTTCACCGCACTCATGCTGTACAGCATTATCACCTCGCA
CACAGCAGGGCAAAACTCAAGTCGGCCTATCATTTCAGGCCCGCAGCTCG
CGCGACACATCAACGTCCTCGCTGCTTCCACCATGCCATGGCATCCGAGC
ACGGTTGATGCACCCCTCGTGTAGGCAGAACACGATTGATGTGTTGGGTT
CCGGCTCTCGTCTTATTGACAGTGAAGTCATGTACATCGGTTGTGGAGCA
CGCGATGTGCACAGGATCGCAACCCAAAAGGTGGCGTTTCGAACGAGAAC
AAGGCTTCATGAAGGCATCACGTGTGGCCATGTCGCCCCGCATCTCGCAC
AGCAGTGCAAAAACATACTCCCAGTAGAATTATCTCTTTCTTCACCGCAC
TCATGCTGTACAGCATTATCACCTCGCACACAGCAGGGCAAAACTCAAGT
CGGCCTATCATTTCAGGCCCGCAGCTCGCGCGACACATCAACGTCCTCGC
TGCTTCCACCATGCCATGGCATCCGAGCACGGTTGATGCACCCCTCGTGT
AGGCAG
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