mRNA_H-canaliculatus_F_contig1145.1282.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig1145.1282.1
Unique NamemRNA_H-canaliculatus_F_contig1145.1282.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
BLAST of mRNA_H-canaliculatus_F_contig1145.1282.1 vs. uniprot
Match: A0A6H5JCU3_9PHAE (Store-operated calcium entry-associated regulatory factor n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JCU3_9PHAE)

HSP 1 Score: 300 bits (767), Expect = 4.810e-94
Identity = 207/299 (69.23%), Postives = 228/299 (76.25%), Query Frame = 3
Query:  579 QVLTLHNSRHTAGRRSAPVPQLVCQGGCGQWAPDTVQCYNMGSDGTDAAWKCEATMPEGYTFSSVEVGCEGYDYPEDPFILKGSCQLIYSLKGAPERRSNSRAYHDDSGWASSSRSWENGNNPTWDGRPRSKR----AAGTGQDFGSRLITWAVLGVIGYVFFNNFLR--DVPPRGGESSPSPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAQAGGGVYPWLVGGGIGAALGYMFRPRPRRHTRTTGGMAWNQGYGMG 1457
            +V+TLH+SR TAGRRSAPVPQLVC+GGC +W P  VQCYNMGSDGTDAAWKCEA MP+GY+FSSVEVGCEGYDYP+DP+ILK SCQLIYSLK +P          DD GW SS+RSWE+GNNPTWDGRP  ++      GTG+DFGSRL+TWAVLGV+GYV +N FLR  + P  GG                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX           GGG++PWL GGGIGAALGYM RPR RRH    GGMAWNQGYG G
Sbjct:   40 KVVTLHDSRDTAGRRSAPVPQLVCRGGCQEWTPQVVQCYNMGSDGTDAAWKCEANMPDGYSFSSVEVGCEGYDYPDDPYILKDSCQLIYSLKASPVNGGGRGGVGDD-GWGSSARSWEDGNNPTWDGRPAGRKHGRGEVGTGRDFGSRLVTWAVLGVVGYVLYNTFLRAAETPFGGGXXX--------------XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGTAPATSATAQGGGMFPWLAGGGIGAALGYMLRPRHRRHAPARGGMAWNQGYGTG 323          
BLAST of mRNA_H-canaliculatus_F_contig1145.1282.1 vs. uniprot
Match: A0A6T5NZL0_HETAK (Store-operated calcium entry-associated regulatory factor n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6T5NZL0_HETAK)

HSP 1 Score: 153 bits (386), Expect = 8.610e-39
Identity = 62/97 (63.92%), Postives = 76/97 (78.35%), Query Frame = 3
Query:  579 QVLTLHNSRHTAGRRSAPVPQLVCQGGCGQWAPDTVQCYNMGSDGTDAAWKCEATMPEGYTFSSVEVGCEGYDYPEDPFILKGSCQLIYSLKGAPER 869
            +V+TL   R T GRR++PVPQL C GGCG W PD VQC N+G+DG DA WKC+A MP+GY F  ++VGCEGYD+PEDP+IL GSCQL+Y LKG+  R
Sbjct:   43 EVITLQKGRMTTGRRNSPVPQLECMGGCGDWTPDVVQCRNVGTDGVDANWKCDAEMPQGYRFGQIQVGCEGYDHPEDPYILPGSCQLMYELKGSQAR 139          
BLAST of mRNA_H-canaliculatus_F_contig1145.1282.1 vs. uniprot
Match: A0A261XY99_9FUNG (Store-operated calcium entry-associated regulatory factor n=1 Tax=Bifiguratus adelaidae TaxID=1938954 RepID=A0A261XY99_9FUNG)

HSP 1 Score: 130 bits (327), Expect = 2.680e-30
Identity = 57/100 (57.00%), Postives = 71/100 (71.00%), Query Frame = 3
Query:  585 LTLHNSRHTAGRRSAPVPQLVCQG--GCGQWAPDTVQCYNMGSDGTDAAWKCEATMPEGYTFSSVEVGCEGYDYPEDPFILKGSCQLIYSLKGAPERRSN 878
            +TLH ++ TA RRS+P+ QL C    GC  + P+ VQCYN+G DGTD  W+CEA +P+G  F  VEV CEGYDYP+DP+ILKGSC L YSL G   R S+
Sbjct:   37 ITLHANKPTAARRSSPIHQLTCYDARGCAPYVPEVVQCYNVGWDGTDVQWRCEADLPKGIKFGDVEVSCEGYDYPDDPYILKGSCGLSYSLIGTERRESD 136          
BLAST of mRNA_H-canaliculatus_F_contig1145.1282.1 vs. uniprot
Match: A0A835Z0P4_9STRA (Store-operated calcium entry-associated regulatory factor n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z0P4_9STRA)

HSP 1 Score: 130 bits (327), Expect = 4.420e-30
Identity = 57/99 (57.58%), Postives = 67/99 (67.68%), Query Frame = 3
Query:  579 QVLTLHNSRHTAGRRSAPVPQLVCQG----GCGQWAPDTVQCYNMGSDGTDAAWKCEATMPEGYTFSSVEVGCEGYDYPEDPFILKGSCQLIYSLKGAP 863
            Q +TL     T GRRS PVPQL C+G    G G W P  VQCYN GSDG D  W+C A MP+GY+F   +V CEGY YP+DP+IL+GSCQL Y L+ AP
Sbjct:   33 QTITLFEDGQTTGRRSRPVPQLECRGKGCGGAGAWRPPAVQCYNRGSDGADVQWECRANMPDGYSFGKTQVICEGYAYPDDPYILRGSCQLQYELRVAP 131          
BLAST of mRNA_H-canaliculatus_F_contig1145.1282.1 vs. uniprot
Match: A0A267DFU2_9PLAT (Store-operated calcium entry-associated regulatory factor n=1 Tax=Macrostomum lignano TaxID=282301 RepID=A0A267DFU2_9PLAT)

HSP 1 Score: 127 bits (320), Expect = 5.090e-30
Identity = 74/167 (44.31%), Postives = 92/167 (55.09%), Query Frame = 3
Query:  579 QVLTLHNSRHTAGRRSAPVPQLVCQGGCGQWA--PDTVQCYNMGSDGTDAAWKCEATMPEGYTFSSVEVGCEGYDYPEDPFILKGSCQLIYSLKGAPERRSN-SRAYHDDSGWASSSRSWENGNNPTWDGRPRSKRAAGTGQDFG-SRLITWAVLGVIGYVFFNNFL 1067
            Q LTLH  + T GRRS+P+PQL C  G    +  P +VQCYN GSDG D  WKCEA +P+   F  ++V CEGYDYP+DP+IL GSC L YSLK A   RS+ SR+ H                      + RS R A +  D   S +I  AVL + GY  +  FL
Sbjct:   30 QTLTLHRDKFTTGRRSSPIPQLKCIDGKSSCSNLPSSVQCYNQGSDGIDVQWKCEAQLPKSTQFDKLQVQCEGYDYPDDPYILAGSCGLTYSLKPAGGSRSHKSRSGH----------------------KSRSHRQAASDSDNSVSPVIVIAVLAIAGYCIYAFFL 174          
BLAST of mRNA_H-canaliculatus_F_contig1145.1282.1 vs. uniprot
Match: S4RE13_PETMA (Store-operated calcium entry-associated regulatory factor n=3 Tax=Petromyzon marinus TaxID=7757 RepID=S4RE13_PETMA)

HSP 1 Score: 129 bits (324), Expect = 5.760e-30
Identity = 55/91 (60.44%), Postives = 64/91 (70.33%), Query Frame = 3
Query:  585 LTLHNSRHTAGRRSAPVPQLVCQGGCGQWAPDTVQCYNMGSDGTDAAWKCEATMPEGYTFSSVEVGCEGYDYPEDPFILKGSCQLIYSLKG 857
            LTLH  + TAGRRSA VPQL C GGC  + PD VQC N G DG D  W+C+A M   Y F S+ V CEGYDYP+DP++L+GSC L YSL G
Sbjct:   11 LTLHTGKMTAGRRSAAVPQLRCVGGCSSFTPDVVQCLNRGHDGVDVQWECKADMGSSYRFGSISVSCEGYDYPDDPYVLRGSCGLEYSLVG 101          
BLAST of mRNA_H-canaliculatus_F_contig1145.1282.1 vs. uniprot
Match: A0A8C3ZBR2_9TELE (Store-operated calcium entry-associated regulatory factor n=1 Tax=Denticeps clupeoides TaxID=299321 RepID=A0A8C3ZBR2_9TELE)

HSP 1 Score: 128 bits (322), Expect = 1.730e-29
Identity = 71/173 (41.04%), Postives = 104/173 (60.12%), Query Frame = 3
Query:  579 QVLTLHNSRHTAGRRSAPVPQLVCQGG---CGQWAPDTVQCYNMGSDGTDAAWKCEATMPEGYTFSSVEVGCEGYDYPEDPFILKGSCQLIYSLKGAPERRS----NSRAYHDDSGWASSSRSWENG---NNPTWDGRPRSKRAAGTGQDFGSRLITWAVLGVIGYVFFNNFL 1067
            QVLTLH  R+TA RRS PV QL C GG   CG +AP+ VQC N G DG D  W+C+A +   Y F  +EV CEG+++P+DP+ILKGSC L Y+L+   E RS    +S+++    G+   + S+ NG   N   +   P+ ++ +G+G+  G  L+   +L ++ Y  +  FL
Sbjct:   32 QVLTLHRGRYTAARRSGPVLQLQCSGGSAGCGAFAPEVVQCRNRGWDGVDVQWECKADLDNAYRFGKIEVNCEGFNHPDDPYILKGSCGLEYTLELTEEGRSRRSRDSQSWGGGGGFGQFASSFFNGYSNNKQHYQSSPQYQQDSGSGEGAGGLLVIGLLL-LMAYGVYKMFL 203          
BLAST of mRNA_H-canaliculatus_F_contig1145.1282.1 vs. uniprot
Match: A0A1I8GT88_9PLAT (Store-operated calcium entry-associated regulatory factor n=2 Tax=Macrostomum lignano TaxID=282301 RepID=A0A1I8GT88_9PLAT)

HSP 1 Score: 127 bits (320), Expect = 3.070e-29
Identity = 74/167 (44.31%), Postives = 92/167 (55.09%), Query Frame = 3
Query:  579 QVLTLHNSRHTAGRRSAPVPQLVCQGGCGQWA--PDTVQCYNMGSDGTDAAWKCEATMPEGYTFSSVEVGCEGYDYPEDPFILKGSCQLIYSLKGAPERRSN-SRAYHDDSGWASSSRSWENGNNPTWDGRPRSKRAAGTGQDFG-SRLITWAVLGVIGYVFFNNFL 1067
            Q LTLH  + T GRRS+P+PQL C  G    +  P +VQCYN GSDG D  WKCEA +P+   F  ++V CEGYDYP+DP+IL GSC L YSLK A   RS+ SR+ H                      + RS R A +  D   S +I  AVL + GY  +  FL
Sbjct:   30 QTLTLHRDKFTTGRRSSPIPQLKCIDGKSSCSNLPSSVQCYNQGSDGIDVQWKCEAQLPKSTQFDKLQVQCEGYDYPDDPYILAGSCGLTYSLKPAGGSRSHKSRSGH----------------------KSRSHRQAASDSDKSVSPVIVIAVLAIAGYCIYAFFL 174          
BLAST of mRNA_H-canaliculatus_F_contig1145.1282.1 vs. uniprot
Match: B3S3N1_TRIAD (Store-operated calcium entry-associated regulatory factor n=2 Tax=Trichoplax TaxID=10227 RepID=B3S3N1_TRIAD)

HSP 1 Score: 124 bits (310), Expect = 3.170e-29
Identity = 52/107 (48.60%), Postives = 74/107 (69.16%), Query Frame = 3
Query:  579 QVLTLHNSRHTAGRRSAPVPQLVCQGGCG--QWAPDTVQCYNMGSDGTDAAWKCEATMPEGYTFSSVEVGCEGYDYPEDPFILKGSCQLIYSLKGAPERRSNSRAYH 893
            + +TLH+ R T GRRS+P+PQ+ C GG    ++ PD +QCYN G DG++  W+C+A +P+ Y   +V+V CEGYDYP+DP+ILKGSC + Y L+ A    S S  Y+
Sbjct:   35 EAITLHSGRMTTGRRSSPIPQITCVGGSASHKYQPDVIQCYNRGWDGSEVQWECKANLPKKYRLGAVQVACEGYDYPDDPYILKGSCGVEYRLEYASSSGSYSNNYY 141          
BLAST of mRNA_H-canaliculatus_F_contig1145.1282.1 vs. uniprot
Match: UPI000D7385C6 (store-operated calcium entry-associated regulatory factor-like isoform X2 n=1 Tax=Pomacea canaliculata TaxID=400727 RepID=UPI000D7385C6)

HSP 1 Score: 124 bits (311), Expect = 6.440e-29
Identity = 62/115 (53.91%), Postives = 75/115 (65.22%), Query Frame = 3
Query:  585 LTLHNSRHTAGRRSAPVPQLVCQGGC--GQWAPDTVQCYNMGSDGTDAAWKCEATMPEGYTFSSVEVGCEGYDYPEDPFILKGSCQLIYSLKGAPE---RRSNSRAY---HDDSG 905
            LTL++++ T GRRS+PVPQL C GG   G +APD VQCYN GSDG D  W+C ATM   Y F  ++V CEGYDYP DP++LKGSC L Y L    E    R  S++Y   H D G
Sbjct:   42 LTLYSNKMTTGRRSSPVPQLKCVGGTAYGYFAPDVVQCYNRGSDGNDIQWECRATMDGDYKFGKLDVLCEGYDYPNDPYVLKGSCGLEYELDFTKEGEMHRKQSQSYSHSHRDDG 156          
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1145.1282.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JCU3_9PHAE4.810e-9469.23Store-operated calcium entry-associated regulatory... [more]
A0A6T5NZL0_HETAK8.610e-3963.92Store-operated calcium entry-associated regulatory... [more]
A0A261XY99_9FUNG2.680e-3057.00Store-operated calcium entry-associated regulatory... [more]
A0A835Z0P4_9STRA4.420e-3057.58Store-operated calcium entry-associated regulatory... [more]
A0A267DFU2_9PLAT5.090e-3044.31Store-operated calcium entry-associated regulatory... [more]
S4RE13_PETMA5.760e-3060.44Store-operated calcium entry-associated regulatory... [more]
A0A8C3ZBR2_9TELE1.730e-2941.04Store-operated calcium entry-associated regulatory... [more]
A0A1I8GT88_9PLAT3.070e-2944.31Store-operated calcium entry-associated regulatory... [more]
B3S3N1_TRIAD3.170e-2948.60Store-operated calcium entry-associated regulatory... [more]
UPI000D7385C66.440e-2953.91store-operated calcium entry-associated regulatory... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig1145contigH-canaliculatus_F_contig1145:23119..26514 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score231.9
Seed ortholog evalue3.9e-58
Seed eggNOG ortholog2880.D8LJV5
Preferred nameTMEM66
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005789,GO:0008150,GO:0010959,GO:0012505,GO:0016020,GO:0016021,GO:0030176,GO:0031224,GO:0031227,GO:0031984,GO:0032879,GO:0042175,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043269,GO:0044422,GO:0044424,GO:0044425,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0050789,GO:0051049,GO:0051924,GO:0065007,GO:0098827,GO:2001256
EggNOG free text desc.Store-operated calcium entry-associated regulatory factor
EggNOG OGs28KQW@1,2QT6Y@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionProtein of unknown function DUF1183, TMEM66
Ec32 orthologEc-01_009820.1
Exons4
Model size1586
Cds size888
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig1145.1282.1prot_H-canaliculatus_F_contig1145.1282.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig1145 23119..25106 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928829.3566678-CDS-H-canaliculatus_F_contig1145:23118..236061622928829.3566678-CDS-H-canaliculatus_F_contig1145:23118..23606Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1145 23119..23606 -
1696845581.1600935-CDS-H-canaliculatus_F_contig1145:23118..236061696845581.1600935-CDS-H-canaliculatus_F_contig1145:23118..23606Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1145 23119..23606 -
1622928829.3707464-CDS-H-canaliculatus_F_contig1145:24207..245291622928829.3707464-CDS-H-canaliculatus_F_contig1145:24207..24529Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1145 24208..24529 -
1696845581.1723058-CDS-H-canaliculatus_F_contig1145:24207..245291696845581.1723058-CDS-H-canaliculatus_F_contig1145:24207..24529Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1145 24208..24529 -
1622928829.3854487-CDS-H-canaliculatus_F_contig1145:25028..251061622928829.3854487-CDS-H-canaliculatus_F_contig1145:25028..25106Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1145 25029..25106 -
1696845581.1837218-CDS-H-canaliculatus_F_contig1145:25028..251061696845581.1837218-CDS-H-canaliculatus_F_contig1145:25028..25106Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1145 25029..25106 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928829.3975432-UTR-H-canaliculatus_F_contig1145:25106..251501622928829.3975432-UTR-H-canaliculatus_F_contig1145:25106..25150Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1145 25107..25150 -
1696845581.19405-UTR-H-canaliculatus_F_contig1145:25106..251501696845581.19405-UTR-H-canaliculatus_F_contig1145:25106..25150Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1145 25107..25150 -
1622928829.4105165-UTR-H-canaliculatus_F_contig1145:25860..265141622928829.4105165-UTR-H-canaliculatus_F_contig1145:25860..26514Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1145 25861..26514 -
1696845581.2031324-UTR-H-canaliculatus_F_contig1145:25860..265141696845581.2031324-UTR-H-canaliculatus_F_contig1145:25860..26514Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1145 25861..26514 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig1145.1282.1

>prot_H-canaliculatus_F_contig1145.1282.1 ID=prot_H-canaliculatus_F_contig1145.1282.1|Name=mRNA_H-canaliculatus_F_contig1145.1282.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=296bp
MGSDGTDAAWKCEATMPEGYTFSSVEVGCEGYDYPEDPFILKGSCQLIYS
LKGAPERRSNSRAYHDDSGWASSSRSWENGNNPTWDGRPRSKRAAGTGQD
FGSRLITWAVLGVIGYVFFNNFLRDVPPRGGESSPSPPGSGGTGEGGPGG
AGGGGWGGGGGGGGGGGGGGGGGGNNWRGGGTDNSSSGPPPKGNSPTPTS
PPPPETAQAGGGVYPWLVGGGIGAALGYMFRPRPRRHTRTTGGMAWNQGY
GMGNGGGGGGGGATFRRRSSGGGGGGGGGGRGGSVRAGFGNTTRR*
back to top

mRNA from alignment at H-canaliculatus_F_contig1145:23119..26514-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig1145.1282.1 ID=mRNA_H-canaliculatus_F_contig1145.1282.1|Name=mRNA_H-canaliculatus_F_contig1145.1282.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=3396bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1145:23119..26514- (Hapterophycus canaliculatus Oshoro5f female)
TGGTAGAGGTGGCGGGGGCAGCCAGAACACGCAGCCAAACGAGCCAGGAA TATGGTCACGATCGCGTCCTTCTTGAGCAAGTACAGGTCGGTCGGCAAGC GCGCCCTGGAATCTGCAACTTGAACATCTTTGACACAAGCGCTCCCCGCG AAACCGAACCACTGCTTCAGCTTTGTGTGATCTCTGGCATTCTTGCTGAT GATCGTGATTCCGTGGCTTGTGAACGAGCCGGTTCCTGCTCTGTTTAGAC GATTGTGTGCTAATCCTGCTGTCTTGTTCCAGGATCGATGACCGAAAAAC AGCAACTCCGGAGATGAGATCAGATCAGCAACTGAAACTCAAGAGGCCGC AGCTCTCCTCCAACTCTCCTGCTGCCCTTTCCGCCCTGTCATTCAAGTAA CTCGCTCGGCTAATCTACGAGCCGGGGCGATATCGCTGCATAGGGTATCG GCAGGGTGTGGAGGTGAAGCAGGAAAGCTCTTGAATTCTTGCAAATTTCG TCCTTTCGCCTCGAGTACACTGTCCGCTCTTCACGGGTTCATCCGCAGGT TCCTTGATCATTTCGCCCTCCTCTGTAACAGGTTCTTACCCTCCATAACT CCCGACACACCGCCGGGAGACGTTCCGCTCCCGTTCCTCAGCTAGTTTGT CAAGGTGCGATCCGTCTTGTGCATCTATTGCGGTATGGAGGAGAGCCCCG CCGAATTTCCCGTTGACTCGCGACTTGAAGAATCTTGTGTCTCGGTACTG TAGATATTCGTATGATAGGCGAGGTGATGAGCCACTCCTCCGCCAGTCAA CACAGCTGCACTCAGCAACAGGAACAGGGAACGCTTCGCGCACGTCCCAA AACAGGACAGCCCAACAGCACCATCTTTCTCTGACACGCACGCCTTTGAG AGTTATCGGGCTGGAATGTTAGCGTCGTGCTCTCATGCACTCAGAGCCAA TTGCACTCGTTCGTTCTTGCAGCTCCCCCTAGTTGTAGTCCACCCTGGAA AACGTGGAACGTCTGTCGCTTTCTTCCGGGGTTGAAGGCTGTTGCTCTTC CGGAGCCTATGGATCTGGACTGGACTAGCAGCCACTACCTGTGAAACGTT GAACGTATCCCGCTACAAGAGACCATGCCTAGCACGCATGTTCTTGAATC CACATGAGCTTTGACGAACATCTCGTCCCAACCAAGGAGTCTCGACAGCC GTCTAGGCTGGGACTACTTCCACCACACGTGTCACTCCCCACTCGATCTT TCGGCCGCGCCCAACTGGTGCTCTTGGCACTCCGAGAGCAGTCCTTGCCC TGGTCTCTTTACAATCCCGGTTTCTCTTGTTGAATCTGAAACCCAAATCC GGCGAAAATATCAGGAGGTTGCGGACAGTGGGCCCCCGACACCGTCCAGT GCTACAACATGGGCAGCGACGGGACGGACGCAGCGTGGAAATGCGAAGCG ACCATGCCGGAGGGCTATACCTTCTCCTCCGTCGAAGTAAGTACTTAAGT GGACCCCTAAAGCCCAGCCATAATTTTTGTAAGTTGCAACACTGTTTTCC TCATGTCGACCCTAGGTCAAGAGCGGTTCTTAGAGCTGTTCATAGCCCTA TCCCGGTCGGGCGTCGGTGCTCTACGGGTGAGGGACTTTGACAGGAGTAG TTTGACAGATAAGTTTCCGTGTGGCGCTTCTTGAGCAGACCAATGGTACC TACCCTACAAAAAACCTGCATGTTGTGACTCAGGTTTGCGATGGAGGCGC GATATTCAGGGCGAATGTGGACCTTTTCAAAGCGCGAAGAACAGTACCGA TCTTCTCTCGGTGGAAACGAACGCATCGCCCTTCCAGATTCTGACTCCCC AAATATTTCAGACCCTTGCTTCGCAACGCCTCCCGTGTCCACCACTTCCT CACCAAGTATCCATCCTGTTCCGCTATCGATTTCTCATCATCGCCGACCT TGCGCGCCAAAACACTTGCTGAAAATCGACAACAGGTGGGCTGTGAGGGC TACGACTACCCCGAAGATCCCTTCATTCTCAAGGGCTCCTGCCAGCTTAT CTACTCGCTCAAAGGTGCCCCTGAGCGCCGGAGCAACAGCCGTGCCTACC ACGATGACAGCGGGTGGGCGAGCTCCTCTCGCTCATGGGAAAACGGCAAC AATCCGACGTGGGACGGTCGACCGCGGAGCAAGCGAGCGGCCGGAACGGG GCAGGACTTCGGTAGCCGACTGATAACGTGGGCTGTGCTCGGCGTCATCG GCTACGTTTTCTTCAACAATTTCCTTCGGGACGTTCCTCCACGTGGTGGT GAGTCGAGTCTCTATTCGATTGCACACCTTACGACCGTTGAGCGGGTGAG CAAGAATGAGACGGGAAAGGAGAGGAGGAAGGGGAGATGGGGTTAGGGAG AGGGGTCGCGAAGAGTGGGTGATTGTTGCTGTTGTTGTCTCTATCGCCGT TGTTGTTCTGGCGGTGGTGTTCGTGTTTGCTTGGGTGGTGTTGACGTCTT TGCAGGTCGAGGGCGTTGGAAGGACAGCCGAGTGCCGGCCTGTGATAAGC CCAAGTTGTTGTGACTGCTTTGAGCTCCTTCGGCTAGGCTTTGCTGTGCC AAGCCAGGATCATGTTTCAAGAATTTTGCTCATGGCGGCCGTATAAGCTT TTTTCATGCGATGTTTCGCCACGTTGAATCAACCACCCAAGTTGCGTATT CCGTGGCTCAGAACTCCCTCTCCCTACGGGTCGTATCGTTCTGGATGTCG GCCCCCATGTGTGCGCTGCGGTAGCGGAAGCGTGTTTGTTACCACTGATT TTCCCTCTAGCTCTGACCCTATCCTCCCACCCTGTCCTGTAACTCAATGA CCAATCGTAAGAAGAGCGTTCTTTATCCTCACCCACCCTTCTTTGTTTTC CCACCCAGGCCCTTCTCCGCCTGGTTCTGGTGGGACGGGTGAAGGTGGCC CCGGAGGCGCCGGGGGGGGAGGTTGGGGGGGGGGGGGCGGAGGAGGCGGT GGCGGAGGCGGTGGCGGAGGCGGAGGCGGAAACAACTGGCGAGGGGGCGG CACAGACAACAGCAGCAGCGGCCCACCTCCCAAGGGGAATTCACCCACCC CGACTTCCCCCCCTCCCCCGGAAACTGCTCAAGCAGGGGGCGGCGTCTAT CCGTGGCTCGTTGGCGGCGGGATTGGGGCTGCTCTCGGTTACATGTTCCG GCCTCGTCCACGCAGGCATACGCGCACAACAGGAGGCATGGCCTGGAATC AGGGCTATGGAATGGGGAATGGCGGTGGCGGCGGTGGCGGCGGTGCGACC TTCCGAAGGAGGTCAAGTGGCGGGGGAGGCGGTGGTGGTGGGGGAGGTCG TGGAGGGAGCGTGCGTGCCGGGTTTGGAAACACCACGCGCAGATAG
back to top

Coding sequence (CDS) from alignment at H-canaliculatus_F_contig1145:23119..26514-

>mRNA_H-canaliculatus_F_contig1145.1282.1 ID=mRNA_H-canaliculatus_F_contig1145.1282.1|Name=mRNA_H-canaliculatus_F_contig1145.1282.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1776bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1145:23119..26514- (Hapterophycus canaliculatus Oshoro5f female)
ATGGGCAGCGACGGGACGGACGCAGCGTGGAAATGCGAAGCGACCATGCC
GGAGGGCTATACCTTCTCCTCCGTCGAAATGGGCAGCGACGGGACGGACG
CAGCGTGGAAATGCGAAGCGACCATGCCGGAGGGCTATACCTTCTCCTCC
GTCGAAGTGGGCTGTGAGGGCTACGACTACCCCGAAGATCCCTTCATTCT
CAAGGGCTCCTGCCAGCTTATCTACTCGCTCAAAGGTGCCCCTGAGCGCC
GGAGCAACAGCCGTGCCTACCACGATGACAGCGGGTGGGCGAGCTCCTCT
CGCTCATGGGAAAACGGCAACAATCCGACGTGGGACGGTCGACCGCGGAG
CAAGCGAGCGGCCGGAACGGGGCAGGACTTCGGTAGCCGACTGATAACGT
GGGCTGTGCTCGGCGTCATCGGCTACGTTTTCTTCAACAATTTCCTTCGG
GACGTTCCTCCACGTGGTGGTGAGTCGAGTGGGCTGTGAGGGCTACGACT
ACCCCGAAGATCCCTTCATTCTCAAGGGCTCCTGCCAGCTTATCTACTCG
CTCAAAGGTGCCCCTGAGCGCCGGAGCAACAGCCGTGCCTACCACGATGA
CAGCGGGTGGGCGAGCTCCTCTCGCTCATGGGAAAACGGCAACAATCCGA
CGTGGGACGGTCGACCGCGGAGCAAGCGAGCGGCCGGAACGGGGCAGGAC
TTCGGTAGCCGACTGATAACGTGGGCTGTGCTCGGCGTCATCGGCTACGT
TTTCTTCAACAATTTCCTTCGGGACGTTCCTCCACGTGGTGGTGAGTCGA
GCCCTTCTCCGCCTGGTTCTGGTGGGACGGGTGAAGGTGGCCCCGGAGGC
GCCGGGGGGGGAGGTTGGGGGGGGGGGGGCGGAGGAGGCGGTGGCGGAGG
CGGTGGCGGAGGCGGAGGCGGAAACAACTGGCGAGGGGGCGGCACAGACA
ACAGCAGCAGCGGCCCACCTCCCAAGGGGAATTCACCCACCCCGACTTCC
CCCCCTCCCCCGGAAACTGCTCAAGCAGGGGGCGGCGTCTATCCGTGGCT
CGTTGGCGGCGGGATTGGGGCTGCTCTCGGTTACATGTTCCGGCCTCGTC
CACGCAGGCATACGCGCACAACAGGAGGCATGGCCTGGAATCAGGGCTAT
GGAATGGGGAATGGCGGTGGCGGCGGTGGCGGCGGTGCGACCTTCCGAAG
GAGGTCAAGTGGCGGGGGAGGCGGTGGTGGTGGGGGAGGTCGTGGAGGGA
GCGTGCGTGCCGGGTTTGGAAACACCACGCGCAGATAGGCCCTTCTCCGC
CTGGTTCTGGTGGGACGGGTGAAGGTGGCCCCGGAGGCGCCGGGGGGGGA
GGTTGGGGGGGGGGGGGCGGAGGAGGCGGTGGCGGAGGCGGTGGCGGAGG
CGGAGGCGGAAACAACTGGCGAGGGGGCGGCACAGACAACAGCAGCAGCG
GCCCACCTCCCAAGGGGAATTCACCCACCCCGACTTCCCCCCCTCCCCCG
GAAACTGCTCAAGCAGGGGGCGGCGTCTATCCGTGGCTCGTTGGCGGCGG
GATTGGGGCTGCTCTCGGTTACATGTTCCGGCCTCGTCCACGCAGGCATA
CGCGCACAACAGGAGGCATGGCCTGGAATCAGGGCTATGGAATGGGGAAT
GGCGGTGGCGGCGGTGGCGGCGGTGCGACCTTCCGAAGGAGGTCAAGTGG
CGGGGGAGGCGGTGGTGGTGGGGGAGGTCGTGGAGGGAGCGTGCGTGCCG
GGTTTGGAAACACCACGCGCAGATAG
back to top