mRNA_H-canaliculatus_F_contig1145.1279.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig1145.1279.1
Unique NamemRNA_H-canaliculatus_F_contig1145.1279.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
BLAST of mRNA_H-canaliculatus_F_contig1145.1279.1 vs. uniprot
Match: D8LJV8_ECTSI (Complex1_LYR_dom domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJV8_ECTSI)

HSP 1 Score: 148 bits (373), Expect = 1.010e-44
Identity = 73/83 (87.95%), Postives = 82/83 (98.80%), Query Frame = 1
Query:   19 MASLRREVLGGYKRLMRVRLAAFKDDSTMIEASKQQLRVEFNKNKAVTDPSKIAGLVKGINEVEDMLKYNIAQARLNERGNYG 267
            MASLRREVLGGY+RLMRVR+ AF+DD+TM+EASKQQLR+EFNKNKAVTDPSKIAGL+KGINEVE+MLKYNIAQARLN+RGNYG
Sbjct:    1 MASLRREVLGGYRRLMRVRVVAFEDDTTMLEASKQQLRIEFNKNKAVTDPSKIAGLIKGINEVEEMLKYNIAQARLNDRGNYG 83          
BLAST of mRNA_H-canaliculatus_F_contig1145.1279.1 vs. uniprot
Match: A0A6H5K8N1_9PHAE (Complex1_LYR_dom domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8N1_9PHAE)

HSP 1 Score: 129 bits (325), Expect = 2.870e-36
Identity = 72/112 (64.29%), Postives = 80/112 (71.43%), Query Frame = 1
Query:   19 MASLRREVLGGYKRLMRVRLAAFKDDSTMIEASKQQLRVEFNKNKAVTDPSKIA------------------------------GLVKGINEVEDMLKYNIAQARLNERGNY 264
            MASLRREVLGGY+RLMRVR+ AFKDD+TM+EASKQQLR+EFNKNKAVTDPSKI                               GL+KGINEVEDMLKYNIAQARLN+RG+Y
Sbjct:    1 MASLRREVLGGYRRLMRVRVVAFKDDTTMLEASKQQLRIEFNKNKAVTDPSKIGQQHSRARGSLDRLYRMESACQIADRFLHVPGLIKGINEVEDMLKYNIAQARLNDRGHY 112          
BLAST of mRNA_H-canaliculatus_F_contig1145.1279.1 vs. uniprot
Match: A0A4D9D3L3_9STRA (Complex1_LYR_dom domain-containing protein n=3 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D3L3_9STRA)

HSP 1 Score: 84.3 bits (207), Expect = 1.030e-18
Identity = 43/88 (48.86%), Postives = 57/88 (64.77%), Query Frame = 1
Query:    1 AAGRSTMASLRREVLGGYKRLMRVRLAAFKDDSTMIEASKQQLRVEFNKNKAVTDPSKIAGLVKGINEVEDMLKYNIAQARLNERGNY 264
            AA       L+  VLGGY+RL+R+RL  F+ D   ++ ++ QLR EFNK++ V D  ++ GLV GI EVE+M   NI Q RLNE GNY
Sbjct:    7 AAAAKASTGLKNSVLGGYRRLLRLRLRVFQGDQYAMDQARLQLRTEFNKHRHVQDHRELEGLVAGIREVEEMFSENIVQGRLNEAGNY 94          
BLAST of mRNA_H-canaliculatus_F_contig1145.1279.1 vs. uniprot
Match: A0A835YM21_9STRA (Complex1_LYR_dom domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YM21_9STRA)

HSP 1 Score: 78.2 bits (191), Expect = 5.000e-17
Identity = 38/74 (51.35%), Postives = 52/74 (70.27%), Query Frame = 1
Query:   25 SLRREVLGGYKRLMRVRLAAFKDDSTMIEASKQQLRVEFNKNKAVTDPSKIAGLVKGINEVEDMLKYNIAQARL 246
            ++R  V+ GY+ L+R RL  FKDD   I ASK +L+ EF KNK VTD +K+A L+KGI EV+ ML +N+ Q R+
Sbjct:    2 AMRSRVMAGYRSLLRTRLVVFKDDDRAIRASKMKLKEEFMKNKNVTDANKLASLLKGIEEVQQMLLHNVVQVRI 75          
BLAST of mRNA_H-canaliculatus_F_contig1145.1279.1 vs. uniprot
Match: A0A7S1U0R5_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1U0R5_9STRA)

HSP 1 Score: 75.1 bits (183), Expect = 2.810e-15
Identity = 37/82 (45.12%), Postives = 56/82 (68.29%), Query Frame = 1
Query:   19 MASLRREVLGGYKRLMRVRLAAFKDDSTMIEASKQQLRVEFNKNKAVTDPSKIAGLVKGINEVEDMLKYNIAQARLNERGNY 264
            MA+ R + L G++RL+R R   F+ D+  + AS+ +LR +F  N+  TD +KIA +++GI+EVEDM+  N  Q  LNE+GNY
Sbjct:    1 MAATRLQALHGFRRLLRARKVLFRGDANALAASQLELRSQFQTNRHETDAAKIAEMLRGIDEVEDMMLNNFVQGELNEQGNY 82          
BLAST of mRNA_H-canaliculatus_F_contig1145.1279.1 vs. uniprot
Match: A0A6G0WSM7_9STRA (Complex1_LYR_dom domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WSM7_9STRA)

HSP 1 Score: 68.9 bits (167), Expect = 6.550e-13
Identity = 35/80 (43.75%), Postives = 50/80 (62.50%), Query Frame = 1
Query:   25 SLRREVLGGYKRLMRVRLAAFKDDSTMIEASKQQLRVEFNKNKAVTDPSKIAGLVKGINEVEDMLKYNIAQARLNERGNY 264
            S+R +VLGGY+RL+R     F  D   +  + + +R  F +N+ V D S + GL+KGI+E E ML YNI Q + NE+G Y
Sbjct:    5 SVRAQVLGGYRRLIRASRQTFGADKRAVVEAHKAVRAAFLENRDVKDVSALQGLIKGIDEAESMLLYNIVQGQANEQGTY 84          
BLAST of mRNA_H-canaliculatus_F_contig1145.1279.1 vs. uniprot
Match: A0A1V9YYX3_9STRA (Complex1_LYR_dom domain-containing protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YYX3_9STRA)

HSP 1 Score: 66.6 bits (161), Expect = 4.880e-12
Identity = 34/80 (42.50%), Postives = 50/80 (62.50%), Query Frame = 1
Query:   25 SLRREVLGGYKRLMRVRLAAFKDDSTMIEASKQQLRVEFNKNKAVTDPSKIAGLVKGINEVEDMLKYNIAQARLNERGNY 264
            SLR + L GY+ L+R    AF+ D   I+ +++ +R  F +N+  TD   IA +VKGI E E ML++NI Q + NE G+Y
Sbjct:    2 SLRSQALWGYRSLIRASEQAFRGDVYAIKEARKAIRAAFVENRRETDTETIAAMVKGIEEAESMLRFNIVQGKKNEAGSY 81          
BLAST of mRNA_H-canaliculatus_F_contig1145.1279.1 vs. uniprot
Match: A0A3M6VHL4_9STRA (Complex1_LYR_dom domain-containing protein n=1 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VHL4_9STRA)

HSP 1 Score: 65.1 bits (157), Expect = 2.180e-11
Identity = 35/76 (46.05%), Postives = 49/76 (64.47%), Query Frame = 1
Query:   25 SLRREVLGGYKRLMRVRLAAFKDDSTMIEASKQQLRVEFNKNKAVTDPSKIAGLVKGINEVEDMLKYNIAQARLNE 252
            S+RR+VLGGY+RL+R    AF+DD+  ++ +   LR  F  N  VTD  ++  LVKGI+E E ML ++I Q R  E
Sbjct:    2 SIRRQVLGGYRRLLRASRQAFRDDAYALQQAHLTLRQNFIDNCQVTDKKQLDELVKGIDEAEGMLLHHIVQGRAKE 77          
BLAST of mRNA_H-canaliculatus_F_contig1145.1279.1 vs. uniprot
Match: A0A8K1CDB7_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CDB7_PYTOL)

HSP 1 Score: 65.1 bits (157), Expect = 2.180e-11
Identity = 34/86 (39.53%), Postives = 50/86 (58.14%), Query Frame = 1
Query:   25 SLRREVLGGYKRLMRVRLAAFKDDSTMIEASKQQLRVEFNKNKAVTDPSKIAGLVKGINEVEDMLKYNIAQARLNERGNYGGCPMW 282
            SLR +VLGGY+RL+R     F+ D+  I+ ++  LR  F  N+ V D   +  L+KGI E EDML+++I Q R     +  G P +
Sbjct:    2 SLRSQVLGGYRRLLRASRETFRGDTYAIDQARLALRENFLVNREVQDEDTVHELIKGITEAEDMLRHHIVQGRQKATDDATGAPRY 87          
BLAST of mRNA_H-canaliculatus_F_contig1145.1279.1 vs. uniprot
Match: A0A067C3I0_SAPPC (Complex1_LYR_dom domain-containing protein n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067C3I0_SAPPC)

HSP 1 Score: 64.7 bits (156), Expect = 2.750e-11
Identity = 34/80 (42.50%), Postives = 49/80 (61.25%), Query Frame = 1
Query:   25 SLRREVLGGYKRLMRVRLAAFKDDSTMIEASKQQLRVEFNKNKAVTDPSKIAGLVKGINEVEDMLKYNIAQARLNERGNY 264
            SLR + L GY+RL+R    AF  D   I  +++ +R  F +N+A TD   I  +VKGI+E E ML +NI Q + NE G++
Sbjct:    2 SLRSQALWGYRRLVRASEKAFVGDVYAITEARKAIRANFAENRAETDAETIQAMVKGIDEAESMLLFNIVQGKKNESGSF 81          
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1145.1279.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LJV8_ECTSI1.010e-4487.95Complex1_LYR_dom domain-containing protein n=1 Tax... [more]
A0A6H5K8N1_9PHAE2.870e-3664.29Complex1_LYR_dom domain-containing protein n=1 Tax... [more]
A0A4D9D3L3_9STRA1.030e-1848.86Complex1_LYR_dom domain-containing protein n=3 Tax... [more]
A0A835YM21_9STRA5.000e-1751.35Complex1_LYR_dom domain-containing protein n=1 Tax... [more]
A0A7S1U0R5_9STRA2.810e-1545.12Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A6G0WSM7_9STRA6.550e-1343.75Complex1_LYR_dom domain-containing protein n=1 Tax... [more]
A0A1V9YYX3_9STRA4.880e-1242.50Complex1_LYR_dom domain-containing protein n=1 Tax... [more]
A0A3M6VHL4_9STRA2.180e-1146.05Complex1_LYR_dom domain-containing protein n=1 Tax... [more]
A0A8K1CDB7_PYTOL2.180e-1139.53Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A067C3I0_SAPPC2.750e-1142.50Complex1_LYR_dom domain-containing protein n=2 Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig1145contigH-canaliculatus_F_contig1145:1514..2391 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeMetazoa
Seed ortholog score67.0
Seed ortholog evalue5.2e-09
Seed eggNOG ortholog45351.EDO32069
KEGG koko:K18170
EggNOG free text desc.respiratory chain complex III assembly
EggNOG OGs2CYPH@1,2S5FU@2759,3A6GN@33154,3BUD8@33208
COG Functional cat.S
Best tax levelMetazoa
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03029
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-01_009840.3
Exons2
Model size291
Cds size273
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig1145.1279.1prot_H-canaliculatus_F_contig1145.1279.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig1145 1514..2373 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928828.6258707-CDS-H-canaliculatus_F_contig1145:1513..16261622928828.6258707-CDS-H-canaliculatus_F_contig1145:1513..1626Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1145 1514..1626 -
1696845580.8783422-CDS-H-canaliculatus_F_contig1145:1513..16261696845580.8783422-CDS-H-canaliculatus_F_contig1145:1513..1626Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1145 1514..1626 -
1622928828.6518075-CDS-H-canaliculatus_F_contig1145:2213..23731622928828.6518075-CDS-H-canaliculatus_F_contig1145:2213..2373Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1145 2214..2373 -
1696845580.898837-CDS-H-canaliculatus_F_contig1145:2213..23731696845580.898837-CDS-H-canaliculatus_F_contig1145:2213..2373Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1145 2214..2373 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928828.673594-UTR-H-canaliculatus_F_contig1145:2373..23911622928828.673594-UTR-H-canaliculatus_F_contig1145:2373..2391Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1145 2374..2391 -
1696845580.9097555-UTR-H-canaliculatus_F_contig1145:2373..23911696845580.9097555-UTR-H-canaliculatus_F_contig1145:2373..2391Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1145 2374..2391 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig1145.1279.1

>prot_H-canaliculatus_F_contig1145.1279.1 ID=prot_H-canaliculatus_F_contig1145.1279.1|Name=mRNA_H-canaliculatus_F_contig1145.1279.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=91bp
MASLRREVLGGYKRLMRVRLAAFKDDSTMIEASKQQLRVEFNKNKAVTDP
SKIAGLVKGINEVEDMLKYNIAQARLNERGNYGGCPMWTS*
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mRNA from alignment at H-canaliculatus_F_contig1145:1514..2391-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig1145.1279.1 ID=mRNA_H-canaliculatus_F_contig1145.1279.1|Name=mRNA_H-canaliculatus_F_contig1145.1279.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=878bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1145:1514..2391- (Hapterophycus canaliculatus Oshoro5f female)
GCTGCTGGGCGTTCTACAATGGCGTCGCTCCGACGAGAGGTACTCGGTGG GTACAAGCGTCTCATGCGCGTTCGTCTAGCTGCGTTCAAAGATGATTCGA CAATGATTGAGGCGTCAAAACAGCAGCTCCGAGTAGAGTTCAACAAGAAC AAGGCAGTCACCGACCCCTCGAAGATAGGTGAGAAACAACCGACAAACGT CTCCCGTCTTCCCTTCTCGCCTGGGGTACAAGTGGATCATAGATTCCACC GTTGATAACGTTGGACAATGCAGGACCGAGCAGTGTCACTTCAAACAGAG GTCACCGGCACAAGGTGTTATGGACGCGGAGGTCTGTCCCGAGACTAATT ACCCAAAGGCAGCAGCATCTCCGTGTCTTCCCACCTCGAGTGGGCTCCAA GTGTGAAGGCGGAAGAAGCAGTTTGGTGATGAGCGGTAAGAGCCTAGCAG GCTACAGCAGTCGGCATGCACCCACCTACAACCGAGTACTTCCTCCACGC GGTCTCCGAACACGAAGCCCTATCATATATTCGCTATGCCTTTGGATGCG GCTCTCAGAGAGAACCCGGTCACTCGCCCCTCTAGAAGTCTGCTCCCCCG TTTGACTGTCTGGCGGGTCGCCGAGGGGCCGTCCACAGGGGGCTTCTTCA GCAGGCACTGGTGGTACCTTGTGGTGCCATTGCTCTCTGCATTGCCCTAT CCTTGCTCTCGGTGCTCACATAACTGATTTGGTAGCCTGCTGTCACCTTT CCGATTTTCCTTCAGCCGGGCTCGTCAAGGGCATTAACGAGGTCGAGGAC ATGCTCAAGTACAACATCGCCCAGGCCAGGCTGAACGAGCGAGGCAATTA CGGTGGGTGTCCCATGTGGACGTCATGA
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig1145:1514..2391-

>mRNA_H-canaliculatus_F_contig1145.1279.1 ID=mRNA_H-canaliculatus_F_contig1145.1279.1|Name=mRNA_H-canaliculatus_F_contig1145.1279.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=546bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1145:1514..2391- (Hapterophycus canaliculatus Oshoro5f female)
ATGGCGTCGCTCCGACGAGAGGTACTCGGTGGGTACAAGCGTCTCATGCG
CGTTCGTCTAGCTGCGTTCAAAGATGATTCGACAATGATTGAGGCGTCAA
AACAGCAGCTCCGAGTAGAGTTCAACAAGAACAAGGCAGTCACCGACCCC
TCGAAGATAGATGGCGTCGCTCCGACGAGAGGTACTCGGTGGGTACAAGC
GTCTCATGCGCGTTCGTCTAGCTGCGTTCAAAGATGATTCGACAATGATT
GAGGCGTCAAAACAGCAGCTCCGAGTAGAGTTCAACAAGAACAAGGCAGT
CACCGACCCCTCGAAGATAGCCGGGCTCGTCAAGGGCATTAACGAGGTCG
AGGACATGCTCAAGTACAACATCGCCCAGGCCAGGCTGAACGAGCGAGGC
AATTACGGTGGGTGTCCCATGTGGACGTCATGACCGGGCTCGTCAAGGGC
ATTAACGAGGTCGAGGACATGCTCAAGTACAACATCGCCCAGGCCAGGCT
GAACGAGCGAGGCAATTACGGTGGGTGTCCCATGTGGACGTCATGA
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