mRNA_H-canaliculatus_F_contig11448.1278.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig11448.1278.1
Unique NamemRNA_H-canaliculatus_F_contig11448.1278.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig11448.1278.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig11448contigH-canaliculatus_F_contig11448:2892..4083 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons2
Model size234
Cds size234
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928828.5667093-CDS-H-canaliculatus_F_contig11448:2891..30661622928828.5667093-CDS-H-canaliculatus_F_contig11448:2891..3066Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11448 2892..3066 -
1696845580.861958-CDS-H-canaliculatus_F_contig11448:2891..30661696845580.861958-CDS-H-canaliculatus_F_contig11448:2891..3066Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11448 2892..3066 -
1622928828.5781145-CDS-H-canaliculatus_F_contig11448:4024..40831622928828.5781145-CDS-H-canaliculatus_F_contig11448:4024..4083Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11448 4025..4083 -
1696845580.869812-CDS-H-canaliculatus_F_contig11448:4024..40831696845580.869812-CDS-H-canaliculatus_F_contig11448:4024..4083Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11448 4025..4083 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig11448.1278.1prot_H-canaliculatus_F_contig11448.1278.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig11448 2892..4083 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig11448.1278.1

>prot_H-canaliculatus_F_contig11448.1278.1 ID=prot_H-canaliculatus_F_contig11448.1278.1|Name=mRNA_H-canaliculatus_F_contig11448.1278.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=78bp
RRRTALTPTSRSSVASESSSWPATTTKFTSTRALSRPASRGPSASTSPRA
TTKPAKAWCEALSGSATTQWLPTGRPC*
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mRNA from alignment at H-canaliculatus_F_contig11448:2892..4083-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig11448.1278.1 ID=mRNA_H-canaliculatus_F_contig11448.1278.1|Name=mRNA_H-canaliculatus_F_contig11448.1278.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=1192bp|location=Sequence derived from alignment at H-canaliculatus_F_contig11448:2892..4083- (Hapterophycus canaliculatus Oshoro5f female)
CGGCGAAGAACGGCACTGACCCCAACCAGCCGGTCGTCGGTGGCGTCCGA
GTCGTCAAGGTACGAGAACGCTTGGATCCGTCGACTGAGAGGGTGACTAC
CTCGATCCTAATGCCTATGCTCGGTGATTTGCAAACGCCGATCTTTGTGC
AGAAAAGTCACAACACACGCGAGGTAGCCGGCTCTCTCATCTGGGTATCC
TCGATCCCGAAGCCTGGCCGTTTCATCCTCTCTCTTGCGAGGCCCCCCGA
TAGACCGATAGACCCCCCGTGGCCTCGGGAGGTGTTTGCCCCCGAGGCTC
CTTTTTCTGGGTCGTTTTTTCCCACGGTCTTACCTGGCATTGACCACACA
GCACTAGAGACGCAGGTCCTTCACGTAAACCTCTCGACAGGCCTCAGCCT
GGCATCTCGCGTGTACGTCAAGCGAGCATTTGTGTTACCTGAGTTGTCCG
TACGTTACTCACTCCACGCGAGGATGGCGACTTTCCCAGATCATTCGAGA
TATCAGACTGGGTTGCTTGCAAGCCACTCTGGTACGAAAGGAGCGACACT
TGTGCCTGTCACTGTGTAATGGAGAGAGAGAGAGAACACGAGCAGAAGCT
AAATGTACGCTCTCGCGGGAATCTCGACCGTGGTCGTCCGCCTCGGGAGC
TTGGTTGATCGAAAGGGGCCCTATGTTGTATGGAGAGTACGAAGTGTGGC
AGTATGACCAACAAGTGGGAGAGCTTTCGAAGTGGAGGCAACCGCAACAA
CCCCAACCCCCACGTACTGTAGGGCCAATCGGGCGCTTGGCTTTTCCAAA
CGTGAATACTTCCTGAGGGCCGTGCGCCGCATGCTTGCGGCACATCAGTA
CGAAAACTAGCGCCCCGAAATCAGCTGATGACGACCAAGCCCCCGCGCAG
GCCCGTAGGCTCTTGGACGTGTACTTGCCCCGACACGGTGATGTGGCGCC
CACAGCTCACGTATGTACCCACACACCTGTGGACCGACGGTCTGTTCCCT
GCCCCACTGCCACTCAGCTGGCCTGCAACCACTACGAAGTTCACGTCGAC
AAGGGCCCTCTCGCGACCGGCCTCGCGAGGACCTTCGGCGTCGACCTCTC
CAAGGGCGACGACGAAGCCCGCGAAAGCATGGTGCGAGGCGCTGAGTGGC
AGCGCAACAACGCAATGGCTCCCAACTGGGAGACCATGCTGA
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig11448:2892..4083-

>mRNA_H-canaliculatus_F_contig11448.1278.1 ID=mRNA_H-canaliculatus_F_contig11448.1278.1|Name=mRNA_H-canaliculatus_F_contig11448.1278.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=468bp|location=Sequence derived from alignment at H-canaliculatus_F_contig11448:2892..4083- (Hapterophycus canaliculatus Oshoro5f female)
CGGCGAAGAACGGCACTGACCCCAACCAGCCGGTCGTCGGTGGCGTCCGA
GTCGTCAAGCGGCGAAGAACGGCACTGACCCCAACCAGCCGGTCGTCGGT
GGCGTCCGAGTCGTCAAGCTGGCCTGCAACCACTACGAAGTTCACGTCGA
CAAGGGCCCTCTCGCGACCGGCCTCGCGAGGACCTTCGGCGTCGACCTCT
CCAAGGGCGACGACGAAGCCCGCGAAAGCATGGTGCGAGGCGCTGAGTGG
CAGCGCAACAACGCAATGGCTCCCAACTGGGAGACCATGCTGACTGGCCT
GCAACCACTACGAAGTTCACGTCGACAAGGGCCCTCTCGCGACCGGCCTC
GCGAGGACCTTCGGCGTCGACCTCTCCAAGGGCGACGACGAAGCCCGCGA
AAGCATGGTGCGAGGCGCTGAGTGGCAGCGCAACAACGCAATGGCTCCCA
ACTGGGAGACCATGCTGA
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