mRNA_H-canaliculatus_F_contig11447.1276.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig11447.1276.1
Unique NamemRNA_H-canaliculatus_F_contig11447.1276.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig11447.1276.1 vs. uniprot
Match: A0A6H5L5V9_9PHAE (Rab-GAP TBC domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5V9_9PHAE)

HSP 1 Score: 165 bits (418), Expect = 3.050e-44
Identity = 103/181 (56.91%), Postives = 117/181 (64.64%), Query Frame = 1 
Query:    1 VPRTMLVSTSWKAAVSPAQERLYKAVVRRAGVIPLRRAAFWEFMVLGRF--------HAAGLAAA---------GDLAPSSTSRPLAMTAAAEAAGGAGEGSSSHRPSPHPSRRHSLAELARQGMASRWSKAIDADVERTFGRRPMSFRGEFGRGSTQGSRRRHWWPESLGGAPIGARTPR 492
            VPR +LVS SWKAAV   Q+RLYK +VRRAGV PL RA FWEFM+L RF        +++  A A         GD   +S   P A  A   ++GGA   SSS +         SLAELARQGM S W+KAIDADV RTFG RPMSFR EFG  + Q SRRRHWWPESLGGAP+GARTPR
Sbjct: 1576 VPRAVLVSCSWKAAVLSDQQRLYKGIVRRAGVTPLWRAGFWEFMILRRFLFRCNNDEYSSNRACATARQKAGIDGDALGAS---PPAENATDGSSGGAATASSSPQ--------FSLAELARQGMDSEWAKAIDADVARTFGERPMSFRREFGSMTRQDSRRRHWWPESLGGAPLGARTPR 1745
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BLAST of mRNA_H-canaliculatus_F_contig11447.1276.1 vs. uniprot
Match: D8LIK8_ECTSI (Rab-GAP TBC domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LIK8_ECTSI)

HSP 1 Score: 160 bits (405), Expect = 1.700e-42
Identity = 96/166 (57.83%), Postives = 108/166 (65.06%), Query Frame = 1 
Query:    1 VPRTMLVSTSWKAAVSPAQERLYKAVVRRAGVIPLRRAAFWEFMVL--GRFHAAGLAAAGDLAPSSTSRPLAMTAAAEAAGGAGEGSSSHRPSPHPSRRHSLAELARQGMASRWSKAIDADVERTFGRRPMSFRGEFGRGSTQGSRRRHWWPESLGGAPIGARTPR 492
            VP  MLVS+SWK AV   Q+RLYK +VRRAGV PL RA FWEFM+L   R  AA    AG    +  + P A +A         + S         S + SLAELARQGM S W+KAIDADV RTFG RPMSFR EFG  + Q SRRRHWWPESLGGAP+GARTPR
Sbjct: 1291 VPTAMLVSSSWKTAVLSDQQRLYKGIVRRAGVTPLWRAGFWEFMILRSNRACAAARQKAGTDGDALGASPPAESAT--------DSSXXXXXXXXSSPQFSLAELARQGMDSEWAKAIDADVARTFGERPMSFRREFGSMTRQDSRRRHWWPESLGGAPLGARTPR 1448
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig11447.1276.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5L5V9_9PHAE3.050e-4456.91Rab-GAP TBC domain-containing protein n=1 Tax=Ecto... [more]
D8LIK8_ECTSI1.700e-4257.83Rab-GAP TBC domain-containing protein n=1 Tax=Ecto... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig11447contigH-canaliculatus_F_contig11447:1972..3371 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score158.3
Seed ortholog evalue3e-36
Seed eggNOG ortholog2880.D8LIK8
EggNOG free text desc.regulation of vesicle fusion
EggNOG OGsCOG5210@1,KOG1102@2759
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons3
Model size492
Cds size480
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig11447.1276.1prot_H-canaliculatus_F_contig11447.1276.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig11447 1972..3359 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928828.4340906-CDS-H-canaliculatus_F_contig11447:1971..20401622928828.4340906-CDS-H-canaliculatus_F_contig11447:1971..2040Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11447 1972..2040 -
1696845580.7949584-CDS-H-canaliculatus_F_contig11447:1971..20401696845580.7949584-CDS-H-canaliculatus_F_contig11447:1971..2040Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11447 1972..2040 -
1622928828.4512618-CDS-H-canaliculatus_F_contig11447:2706..29821622928828.4512618-CDS-H-canaliculatus_F_contig11447:2706..2982Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11447 2707..2982 -
1696845580.8083792-CDS-H-canaliculatus_F_contig11447:2706..29821696845580.8083792-CDS-H-canaliculatus_F_contig11447:2706..2982Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11447 2707..2982 -
1622928828.4668617-CDS-H-canaliculatus_F_contig11447:3224..33591622928828.4668617-CDS-H-canaliculatus_F_contig11447:3224..3359Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11447 3225..3359 -
1696845580.8209496-CDS-H-canaliculatus_F_contig11447:3224..33591696845580.8209496-CDS-H-canaliculatus_F_contig11447:3224..3359Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11447 3225..3359 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928828.4787164-UTR-H-canaliculatus_F_contig11447:3359..33711622928828.4787164-UTR-H-canaliculatus_F_contig11447:3359..3371Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig11447 3360..3371 -
1696845580.8301034-UTR-H-canaliculatus_F_contig11447:3359..33711696845580.8301034-UTR-H-canaliculatus_F_contig11447:3359..3371Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig11447 3360..3371 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig11447.1276.1

>prot_H-canaliculatus_F_contig11447.1276.1 ID=prot_H-canaliculatus_F_contig11447.1276.1|Name=mRNA_H-canaliculatus_F_contig11447.1276.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=160bp
MLVSTSWKAAVSPAQERLYKAVVRRAGVIPLRRAAFWEFMVLGRFHAAGL
AAAGDLAPSSTSRPLAMTAAAEAAGGAGEGSSSHRPSPHPSRRHSLAELA
RQGMASRWSKAIDADVERTFGRRPMSFRGEFGRGSTQGSRRRHWWPESLG
GAPIGARTPR
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mRNA from alignment at H-canaliculatus_F_contig11447:1972..3371-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig11447.1276.1 ID=mRNA_H-canaliculatus_F_contig11447.1276.1|Name=mRNA_H-canaliculatus_F_contig11447.1276.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=1400bp|location=Sequence derived from alignment at H-canaliculatus_F_contig11447:1972..3371- (Hapterophycus canaliculatus Oshoro5f female)
GTGCCCAGGACCATGCTGGTCTCTACCTCCTGGAAGGCGGCGGTTTCGCC
CGCTCAGGAACGCCTGTACAAGGCGGTGGTACGCCGAGCCGGGGTCATCC
CTCTCCGGAGAGCGGCCTTCTGGGAGTTCATGGTCCTTGGCAGGTTTGTG
CAATCCTGGGCGAGGGTGTGGGGGGAATGGGGGTCGTTGATTTCTTGCAA
GGTGGAAAGATCGGTGTCACGTCGGGCGTCGATGACACCTGTGGGGTAGA
GTTCCCTCGACGTTTCGTAACGCCTCTTTTTTCGCGTCCGGCTCACGCGT
GAATTCCCCCCCCCCCCCTCTCGGCTCGTCCCCACAGCAGCAGAGCCCCC
GCGAAACAGGGGGAGATGAAGGACGCCCCTCTCGTCGAGCATGCCGCTGG
TTTGGCTGCTGCTGGCGACCTTGCGCCGTCGTCGACATCGCGGCCGCTCG
CAATGACGGCAGCGGCAGAGGCTGCAGGAGGAGCAGGAGAGGGGTCGTCG
TCGCATCGGCCGTCTCCCCATCCTTCGAGGCGGCACAGTCTCGCCGAGCT
CGCTCGCCAGGGCATGGCCTCGCGGTGGTCCAAGGCGATCGACGCGGATG
TGGAGCGCACCTTCGGCAGGAGGCCGATGTCGTTCCGGGGAGAGTTCGGA
AGAGGGTCGACGCAGGTGCGTGGTGGTTTGGATACTCGGGGCGCGGCAAG
AGGTCGAAAGAGGGGACGGGAAGGTAGGGATGCGATGTGCGTTCGGGGTG
GACAAGAGTGTGAAATGAGGTGGTGCCATGTTTTGGCGGAGGGAAGACCG
TCGCCGGCGGAGCCCCGTGGAGACAAGCCCGGGACGCGTCGACGGTTTTT
CCTCTGGCGGAGGAGGGAGGGACGGCGGAGGGGAGGTAGCAGGCGGGTAC
GCTCGTGTGTGCATATCCGTGATGACGTTCGCGTGGCCGCCGCCGGGTCA
AAAGTTTCCCGCGGATGTTCCGCGAGGCAGACCTCTTGTTCGCATGCGGG
GCTCGAGGACTACTTTGTTTCCGTTGGCACGAACCGTGAGCGCTTCGGCC
ATGATGCCGCATCCCGCCCACCGGTGTGCGAGGTCTCTCACGGCGCAGAG
GAGCCGCTCGGAAAGCGCCGTTCCCGCCGCCCGCCGCCCGCGGGATCCAT
GACGTCTCAACGTTGTGGGCCCGTGCGGTGGATGTGGCCACCGGACGACG
GTAGATGGAGTAGCAGACTTCGAAGACGGCTGTCTTGAGGCGTTGAGTCG
TCGTATACCTGGTACTGTACGCAACAACGACAACGACAAACCAACCGACT
ACACCGTACACCAACGTTGTGAATTGGACAGGGCTCCCGACGGCGGCACT
GGTGGCCGGAGAGTCTGGGAGGCGCTCCGATTGGCGCGAGGACACCCAGA
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig11447:1972..3371-

>mRNA_H-canaliculatus_F_contig11447.1276.1 ID=mRNA_H-canaliculatus_F_contig11447.1276.1|Name=mRNA_H-canaliculatus_F_contig11447.1276.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=960bp|location=Sequence derived from alignment at H-canaliculatus_F_contig11447:1972..3371- (Hapterophycus canaliculatus Oshoro5f female)
ATGCTGGTCTCTACCTCCTGGAAGGCGGCGGTTTCGCCCGCTCAGGAACG
CCTGTACAAGGCGGTGGTACGCCGAGCCGGGGTCATCCCTCTCCGGAGAG
CGGCCTTCTGGGAGTTCATGGTCCTTGGCAGGTTTATGCTGGTCTCTACC
TCCTGGAAGGCGGCGGTTTCGCCCGCTCAGGAACGCCTGTACAAGGCGGT
GGTACGCCGAGCCGGGGTCATCCCTCTCCGGAGAGCGGCCTTCTGGGAGT
TCATGGTCCTTGGCAGGTTTCATGCCGCTGGTTTGGCTGCTGCTGGCGAC
CTTGCGCCGTCGTCGACATCGCGGCCGCTCGCAATGACGGCAGCGGCAGA
GGCTGCAGGAGGAGCAGGAGAGGGGTCGTCGTCGCATCGGCCGTCTCCCC
ATCCTTCGAGGCGGCACAGTCTCGCCGAGCTCGCTCGCCAGGGCATGGCC
TCGCGGTGGTCCAAGGCGATCGACGCGGATGTGGAGCGCACCTTCGGCAG
GAGGCCGATGTCGTTCCGGGGAGAGTTCGGAAGAGGGTCGACGCAGCATG
CCGCTGGTTTGGCTGCTGCTGGCGACCTTGCGCCGTCGTCGACATCGCGG
CCGCTCGCAATGACGGCAGCGGCAGAGGCTGCAGGAGGAGCAGGAGAGGG
GTCGTCGTCGCATCGGCCGTCTCCCCATCCTTCGAGGCGGCACAGTCTCG
CCGAGCTCGCTCGCCAGGGCATGGCCTCGCGGTGGTCCAAGGCGATCGAC
GCGGATGTGGAGCGCACCTTCGGCAGGAGGCCGATGTCGTTCCGGGGAGA
GTTCGGAAGAGGGTCGACGCAGGGCTCCCGACGGCGGCACTGGTGGCCGG
AGAGTCTGGGAGGCGCTCCGATTGGCGCGAGGACACCCAGAGGCTCCCGA
CGGCGGCACTGGTGGCCGGAGAGTCTGGGAGGCGCTCCGATTGGCGCGAG
GACACCCAGA
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