mRNA_H-canaliculatus_F_contig11446.1275.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female
Overview
Homology
BLAST of mRNA_H-canaliculatus_F_contig11446.1275.1 vs. uniprot
Match: A0A6H5JTX8_9PHAE (RING-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTX8_9PHAE) HSP 1 Score: 417 bits (1073), Expect = 9.260e-127 Identity = 439/852 (51.53%), Postives = 484/852 (56.81%), Query Frame = 1 Query: 1 PIRFRAYVEGAELCLLPCLHVFHKGCINKWCNRHIVCPLCKRHLEAAEPLHTLTAAYNNDHGNGVRSEPGGNPGGGVNRGY------HNTRGMLGTAAPGPASAHGSERGLGGTRSEDGMWNDRVLNAAQLQ-MGGKHNRVTSFSSETRRANSARGRAGERPVRG---GPPHSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXT------------------ASEQRGRGGSGRVAHGTAPHRGSAGSLSRSDFSTSPRSRSDLGLGSREAEHVRSNSDAMLSRHT------ANRRKSXXXXXXXXXXXXXXXXXXAD-------ESKGEGSRRTAAVTGSARKGSKKGVRPKGQGPAVITVRKVAQKANSAVGVTSGXXXXXXXXXXXXXXXXXXXXXRDSRGPGSRDMAPSGGESESDFGGERVFTTNSSRHMGYEDESPEEVTTKALTYGPRKPKASSKDKAGSKDAPGHRRQSSTGSTSAXXXXXXXXXXXXXR------RPSIPGSKSGSGNQSVIATAAATAEAVSKLLGRSSHEDRSRASGGVXXXXXXXXXXXXXXXXXXXXXPTSDGGSDSDARAPVRRSSRTASSSSVRSSSGLRNSH----------GGHQPQLKATPTKIGPVTKGTPAPPMAAARVATWNSTSSGLAPALDMAHTFSASETDCPAGSAGATGAGTGVARGXXXXXXXXXXXXXXXXXXXXXXXXX-----------------------------KGS-GRGWSIRIPSSAGSAEYFGFGASATSAEGGESEKEGGGDGGDAATRTSLASR------------------------VFSRNSGSGGKIGSSASRIFGSSNA 2223 P+ + YVEGAELCLLPCLHVFHK CINKWCNRHIVCPLCKRHLEAAEPLHTLTA+YN+ N V+SEPG +RGY H RGMLG AAPGPASAHGSERGLGGTRSEDGMWNDRVLNAAQ Q MGGKHNRVTSFSSETRR+N+ARGR GER G GPPHS XXXXXXXX XXXXXXX +QRGRGGSGRVAHGTA HR SAGSL+R D STSPRSRSDLG+GSREAE++R+NSDA+LSRH A K+ AD E KGE RR AA ++ + G+ QGPAVITV KV Q S XXXXXXXXXXXXXXXXX TKALTY PRK +A++KDK KD PGH XXXXXXXXXXXXX RPSIPG KSGSGNQSVIATAAATAEAVSKLLGRS+ EDRS XXXXXXXXXXXXXXXXXXXXX SSSSVR+ R H QLK TPTK GPVTKGTPAPPMAAARVATWN+TS+ LAP +D++ + S SET+C +G G+ A XXXXXXXXXXXXXXXXXXXXXXXXX KGS GRGWS +IP+S GSAE+FG G+S ++ G T +LA+ V SR GK+G+ A R+FGSS A Sbjct: 366 PLCNKVYVEGAELCLLPCLHVFHKTCINKWCNRHIVCPLCKRHLEAAEPLHTLTASYNHPGDNTVQSEPG-------HRGYGNGQQRHQWRGMLGNAAPGPASAHGSERGLGGTRSEDGMWNDRVLNAAQRQQMGGKHNRVTSFSSETRRSNNARGRPGERAGSGRGGGPPHSSSXXXXXXXXRPHSVSGSTGRQQXXXXXXXXXXXXXXXXXXXXXXXXXXTEQQRGRGGSGRVAHGTARHRSSAGSLARGDLSTSPRSRSDLGVGSREAENMRANSDAILSRHAGRMNNGAGGTKTLTMKPMLHDDTSWTEAWDADGSGGGAEEVKGEAGRRMAATASAS---GRSGLHSSRQGPAVITVHKVQQNTRSXXXXXXXXXXXXXXXXXXXXXXXX------------------------------XXXXXXXXXXXXXXXXXXXXXTKALTYAPRKSRATAKDK---KD-PGHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRPSIPGPKSGSGNQSVIATAAATAEAVSKLLGRSAPEDRSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-------XXXXXXXXXXXGSSSSVRAGGSKRTVHPQQXXXXXXXXXXXXQLKNTPTKTGPVTKGTPAPPMAAARVATWNTTSAALAPTVDVSQSLSMSETEC-------SGPGSNPAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAQGGADAAAPDAGGGVGSSRSAEIKGSAGRGWSFKIPASVGSAEFFGLGSSVPGTRKNSADAASG-------TEAALAAXXXXXXXXXXXXXXXXXXXXXXXXXVLSRRKSGSGKVGAPAGRLFGSSTA 1152
BLAST of mRNA_H-canaliculatus_F_contig11446.1275.1 vs. uniprot
Match: D8LID0_ECTSI (RING-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LID0_ECTSI) HSP 1 Score: 355 bits (910), Expect = 9.710e-104 Identity = 296/534 (55.43%), Postives = 322/534 (60.30%), Query Frame = 1 Query: 1 PIRFRAYVEGAELCLLPCLHVFHKGCINKWCNRHIVCPLCKRHLEAAEPLHTLTAAYNNDHGNGVRSEPGGNPGGGVNRGY------HNTRGMLGTAAPGPASAHGSERGLGGTRSEDGMWNDRVLNAAQLQ-MGGKHNRVTSFSSETRRANSARGRAGERPVRG---GPPHSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX----------TASEQ-RGRGGSGRVAHGTAPHRGSAGSLSRSDFSTSPRSRSDLGLGSREAEHVRSNSDAMLSRHTANRRKSXXXXXXXXXXXXXXXXXX-------------ADESKGEGSRRTAAVTGSARKGSKKGVRPKGQGPAVITVRKVAQKANSAVGVTSGXXXXXXXXXXXXXXXXXXXXXRDSRGPGSRDMAPSGGESESDFGGERVFTTNSSRHMGYEDESPEEVTTKALTYGPRKPKASSKDKAGSKDAPGHRRQSSTGSTSAXXXXXXXXXXXXXR---RPSIPGSKSGSGNQSVIATAAATAEAVSKLLGRSSHEDRS 1491 P+ +AYVEGAELCLLPCLHVFHK CINKWCNRHIVCPLCKRHLEAAEPLHTLTA+YN+ GN V+SEPG +RGY H RG+LG APGPASAHGSERGLGGTRSEDGMWNDRVLNAAQ Q MGGKHNRVTSFSSETRR+N+ARGR GER G GPPHS XXXXXXX TA+EQ RGRGGSGRVAHGTA HR SAGSL+R D STSPRSRSDLG+GSR+AE++R+NSDAMLSRH + R A+E KGE RR AA+ + + G+ QGPAVITV KV Q S XXXXXXXXXXXXXXXXXXXXX KALTY PRK +A++KDK KD PGH XXXXXXXXXXXXX RPSIPGSKSGSGNQS IAT VSKLLGRS+ EDRS Sbjct: 368 PLCNKAYVEGAELCLLPCLHVFHKTCINKWCNRHIVCPLCKRHLEAAEPLHTLTASYNHPGGNAVQSEPG-------HRGYGNGHQRHQWRGVLGNTAPGPASAHGSERGLGGTRSEDGMWNDRVLNAAQQQQMGGKHNRVTSFSSETRRSNNARGRPGERVGSGRGGGPPHSSSAGAGMGPQRPQSVSGSAGWQQXXXXXXXXXXXXXXXXTTATEQQRGRGGSGRVAHGTARHRSSAGSLARGDLSTSPRSRSDLGVGSRDAENMRANSDAMLSRHASRRNNGAGGTKTLTMKPMFHDDTGGTEAWDADGGGGGAEEVKGEPGRRMAAIASAP---GRSGLHSSRQGPAVITVHKVQQNTRSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX---------------XXXXXXXXXXXXXXXXXXXXXXKALTYAPRKSRATAKDK---KD-PGHXXXXXXXXXXXXXXXXXXXXXXXXXXXXRPSIPGSKSGSGNQSAIATXXXXXXXVSKLLGRSTPEDRS 872
BLAST of mRNA_H-canaliculatus_F_contig11446.1275.1 vs. uniprot
Match: A0A803LT96_CHEQI (RING-type domain-containing protein n=1 Tax=Chenopodium quinoa TaxID=63459 RepID=A0A803LT96_CHEQI) HSP 1 Score: 60.8 bits (146), Expect = 5.780e-7 Identity = 24/40 (60.00%), Postives = 30/40 (75.00%), Query Frame = 1 Query: 19 YVEGAELCLLPCLHVFHKGCINKWCNRHIVCPLCKRHLEA 138 YVEGAELC LPC H FH GCI++W + CPLCK +++A Sbjct: 135 YVEGAELCTLPCNHNFHYGCISRWLRINATCPLCKFNIKA 174
BLAST of mRNA_H-canaliculatus_F_contig11446.1275.1 vs. uniprot
Match: UPI000C1D416E (E3 ubiquitin-protein ligase At4g11680-like n=1 Tax=Olea europaea var. sylvestris TaxID=158386 RepID=UPI000C1D416E) HSP 1 Score: 59.7 bits (143), Expect = 9.490e-7 Identity = 24/44 (54.55%), Postives = 31/44 (70.45%), Query Frame = 1 Query: 19 YVEGAELCLLPCLHVFHKGCINKWCNRHIVCPLCKRHLEAAEPL 150 YV+G ELC LPC H FH CI+KW + + CPLCK ++ +AE L Sbjct: 115 YVDGVELCRLPCNHHFHHSCISKWLHINATCPLCKFNILSAETL 158
BLAST of mRNA_H-canaliculatus_F_contig11446.1275.1 vs. uniprot
Match: A0A7J7PSY4_9CHLO (RING-type domain-containing protein n=1 Tax=Scenedesmus sp. NREL 46B-D3 TaxID=2650976 RepID=A0A7J7PSY4_9CHLO) HSP 1 Score: 58.5 bits (140), Expect = 9.850e-7 Identity = 22/39 (56.41%), Postives = 29/39 (74.36%), Query Frame = 1 Query: 19 YVEGAELCLLPCLHVFHKGCINKWCNRHIVCPLCKRHLE 135 +VEGAEL LPCLH FHKGCI++W + CP+C R ++ Sbjct: 80 FVEGAELRALPCLHKFHKGCIDRWLGQKACCPVCNREVK 118
BLAST of mRNA_H-canaliculatus_F_contig11446.1275.1 vs. uniprot
Match: A0A3Q7IKW3_SOLLC (RING-type domain-containing protein n=6 Tax=Solanum TaxID=4107 RepID=A0A3Q7IKW3_SOLLC) HSP 1 Score: 62.4 bits (150), Expect = 1.180e-6 Identity = 25/44 (56.82%), Postives = 31/44 (70.45%), Query Frame = 1 Query: 19 YVEGAELCLLPCLHVFHKGCINKWCNRHIVCPLCKRHLEAAEPL 150 YVEGAELC+LPC H FH GCI+KW + CPLCK ++ + L Sbjct: 291 YVEGAELCVLPCNHHFHNGCISKWLRINATCPLCKFNILRGDTL 334
BLAST of mRNA_H-canaliculatus_F_contig11446.1275.1 vs. uniprot
Match: A0A803LZU3_CHEQI (RING-type domain-containing protein n=3 Tax=Chenopodium quinoa TaxID=63459 RepID=A0A803LZU3_CHEQI) HSP 1 Score: 60.8 bits (146), Expect = 2.450e-6 Identity = 24/40 (60.00%), Postives = 30/40 (75.00%), Query Frame = 1 Query: 19 YVEGAELCLLPCLHVFHKGCINKWCNRHIVCPLCKRHLEA 138 YVEGAELC LPC H FH GCI++W + CPLCK +++A Sbjct: 237 YVEGAELCTLPCNHNFHYGCISRWLRINATCPLCKFNIKA 276
BLAST of mRNA_H-canaliculatus_F_contig11446.1275.1 vs. uniprot
Match: UPI00053FA57D (E3 ubiquitin-protein ligase At4g11680 n=1 Tax=Beta vulgaris subsp. vulgaris TaxID=3555 RepID=UPI00053FA57D) HSP 1 Score: 60.5 bits (145), Expect = 4.270e-6 Identity = 23/40 (57.50%), Postives = 30/40 (75.00%), Query Frame = 1 Query: 19 YVEGAELCLLPCLHVFHKGCINKWCNRHIVCPLCKRHLEA 138 Y+EGAELC LPC H FH GCI++W + CPLCK +++A Sbjct: 268 YMEGAELCTLPCNHSFHYGCISRWLRINATCPLCKYNIKA 307
BLAST of mRNA_H-canaliculatus_F_contig11446.1275.1 vs. uniprot
Match: A0A6A4LC07_9ERIC (RING-type domain-containing protein (Fragment) n=2 Tax=Rhododendron TaxID=4346 RepID=A0A6A4LC07_9ERIC) HSP 1 Score: 59.7 bits (143), Expect = 6.940e-6 Identity = 24/44 (54.55%), Postives = 30/44 (68.18%), Query Frame = 1 Query: 19 YVEGAELCLLPCLHVFHKGCINKWCNRHIVCPLCKRHLEAAEPL 150 YV+GAELC LPC H FH GCI+KW + CPLCK ++ + L Sbjct: 257 YVDGAELCALPCRHHFHVGCISKWLRINATCPLCKFNILRGDNL 300
BLAST of mRNA_H-canaliculatus_F_contig11446.1275.1 vs. uniprot
Match: A0A0K9S4E1_SPIOL (RING-type domain-containing protein n=1 Tax=Spinacia oleracea TaxID=3562 RepID=A0A0K9S4E1_SPIOL) HSP 1 Score: 59.7 bits (143), Expect = 8.090e-6 Identity = 23/40 (57.50%), Postives = 29/40 (72.50%), Query Frame = 1 Query: 19 YVEGAELCLLPCLHVFHKGCINKWCNRHIVCPLCKRHLEA 138 YVEG ELC LPC H FH GCI++W + CPLCK +++A Sbjct: 276 YVEGVELCTLPCNHNFHHGCISRWLRINATCPLCKFNIKA 315 The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig11446.1275.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90) Total hits: 17
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-canaliculatus_F_contig11446.1275.1 >prot_H-canaliculatus_F_contig11446.1275.1 ID=prot_H-canaliculatus_F_contig11446.1275.1|Name=mRNA_H-canaliculatus_F_contig11446.1275.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=765bp PIRFRAYVEGAELCLLPCLHVFHKGCINKWCNRHIVCPLCKRHLEAAEPLback to top mRNA from alignment at H-canaliculatus_F_contig11446:749..3043- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-canaliculatus_F_contig11446.1275.1 ID=mRNA_H-canaliculatus_F_contig11446.1275.1|Name=mRNA_H-canaliculatus_F_contig11446.1275.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=2295bp|location=Sequence derived from alignment at H-canaliculatus_F_contig11446:749..3043- (Hapterophycus canaliculatus Oshoro5f female)back to top Coding sequence (CDS) from alignment at H-canaliculatus_F_contig11446:749..3043- >mRNA_H-canaliculatus_F_contig11446.1275.1 ID=mRNA_H-canaliculatus_F_contig11446.1275.1|Name=mRNA_H-canaliculatus_F_contig11446.1275.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=4590bp|location=Sequence derived from alignment at H-canaliculatus_F_contig11446:749..3043- (Hapterophycus canaliculatus Oshoro5f female)back to top |