mRNA_H-canaliculatus_F_contig11438.1266.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig11438.1266.1
Unique NamemRNA_H-canaliculatus_F_contig11438.1266.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig11438.1266.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig11438contigH-canaliculatus_F_contig11438:619..1140 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons1
Model size523
Cds size486
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928827.222948-CDS-H-canaliculatus_F_contig11438:618..11041622928827.222948-CDS-H-canaliculatus_F_contig11438:618..1104Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11438 619..1104 +
1696845580.1871443-CDS-H-canaliculatus_F_contig11438:618..11041696845580.1871443-CDS-H-canaliculatus_F_contig11438:618..1104Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11438 619..1104 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928827.234707-UTR-H-canaliculatus_F_contig11438:1104..11401622928827.234707-UTR-H-canaliculatus_F_contig11438:1104..1140Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig11438 1105..1140 +
1696845580.1979122-UTR-H-canaliculatus_F_contig11438:1104..11401696845580.1979122-UTR-H-canaliculatus_F_contig11438:1104..1140Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig11438 1105..1140 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig11438.1266.1prot_H-canaliculatus_F_contig11438.1266.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig11438 619..1104 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig11438.1266.1

>prot_H-canaliculatus_F_contig11438.1266.1 ID=prot_H-canaliculatus_F_contig11438.1266.1|Name=mRNA_H-canaliculatus_F_contig11438.1266.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=162bp
PFRVHPTSPLLSRRIVIAAPRTDASHRRSVPPAPAVILLPLFCHSALVGP
LTGGRSTGSLASACASCQPRENSDLSTYHLVPATKRSKACARVRSLQATD
IKRTWALPYGARLGQPQQNYKLKTRVLTAPSALSPDCMELGMVVVSRFSE
GRSVRLVDHFF*
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mRNA from alignment at H-canaliculatus_F_contig11438:619..1140+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig11438.1266.1 ID=mRNA_H-canaliculatus_F_contig11438.1266.1|Name=mRNA_H-canaliculatus_F_contig11438.1266.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=522bp|location=Sequence derived from alignment at H-canaliculatus_F_contig11438:619..1140+ (Hapterophycus canaliculatus Oshoro5f female)
CCGTTCCGTGTTCACCCCACCTCGCCTCTCCTTTCCCGTCGGATCGTCAT
CGCCGCTCCGCGGACAGACGCGTCGCACCGACGCTCTGTACCGCCCGCAC
CAGCCGTGATTCTCCTACCACTCTTTTGTCATTCCGCTTTGGTGGGGCCC
CTGACTGGCGGACGTTCCACGGGGTCCCTAGCCTCCGCTTGTGCCTCTTG
CCAACCACGAGAAAATTCAGACCTATCCACTTATCATCTTGTGCCGGCCA
CGAAAAGATCAAAGGCATGTGCGCGTGTGCGCAGTCTGCAAGCCACGGAT
ATAAAACGCACGTGGGCACTTCCGTATGGTGCACGATTGGGCCAACCACA
GCAAAACTATAAACTGAAAACACGAGTTTTGACCGCGCCCAGCGCACTCT
CCCCTGACTGCATGGAACTCGGCATGGTCGTCGTGAGCCGTTTCTCAGAG
GGGCGTTCCGTCCGTCTCGTTGACCATTTTTTCTGAAAACGAGAACCACG
CCCGCTCTTACCTTGTGCCTCG
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig11438:619..1140+

>mRNA_H-canaliculatus_F_contig11438.1266.1 ID=mRNA_H-canaliculatus_F_contig11438.1266.1|Name=mRNA_H-canaliculatus_F_contig11438.1266.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=972bp|location=Sequence derived from alignment at H-canaliculatus_F_contig11438:619..1140+ (Hapterophycus canaliculatus Oshoro5f female)
CCGTTCCGTGTTCACCCCACCTCGCCTCTCCTTTCCCGTCGGATCGTCAT
CGCCGCTCCGCGGACAGACGCGTCGCACCGACGCTCTGTACCGCCCGCAC
CAGCCGTGATTCTCCTACCACTCTTTTGTCATTCCGCTTTGGTGGGGCCC
CTGACTGGCGGACGTTCCACGGGGTCCCTAGCCTCCGCTTGTGCCTCTTG
CCAACCACGAGAAAATTCAGACCTATCCACTTATCATCTTGTGCCGGCCA
CGAAAAGATCAAAGGCATGTGCGCGTGTGCGCAGTCTGCAAGCCACGGAT
ATAAAACGCACGTGGGCACTTCCGTATGGTGCACGATTGGGCCAACCACA
GCAAAACTATAAACTGAAAACACGAGTTTTGACCGCGCCCAGCGCACTCT
CCCCTGACTGCATGGAACTCGGCATGGTCGTCGTGAGCCGTTTCTCAGAG
GGGCGTTCCGTCCGTCTCGTTGACCATTTTTTCTGACCGTTCCGTGTTCA
CCCCACCTCGCCTCTCCTTTCCCGTCGGATCGTCATCGCCGCTCCGCGGA
CAGACGCGTCGCACCGACGCTCTGTACCGCCCGCACCAGCCGTGATTCTC
CTACCACTCTTTTGTCATTCCGCTTTGGTGGGGCCCCTGACTGGCGGACG
TTCCACGGGGTCCCTAGCCTCCGCTTGTGCCTCTTGCCAACCACGAGAAA
ATTCAGACCTATCCACTTATCATCTTGTGCCGGCCACGAAAAGATCAAAG
GCATGTGCGCGTGTGCGCAGTCTGCAAGCCACGGATATAAAACGCACGTG
GGCACTTCCGTATGGTGCACGATTGGGCCAACCACAGCAAAACTATAAAC
TGAAAACACGAGTTTTGACCGCGCCCAGCGCACTCTCCCCTGACTGCATG
GAACTCGGCATGGTCGTCGTGAGCCGTTTCTCAGAGGGGCGTTCCGTCCG
TCTCGTTGACCATTTTTTCTGA
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