mRNA_H-canaliculatus_F_contig11405.1242.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig11405.1242.1
Unique NamemRNA_H-canaliculatus_F_contig11405.1242.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig11405.1242.1 vs. uniprot
Match: A0A6H5KAV8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAV8_9PHAE)

HSP 1 Score: 256 bits (654), Expect = 5.990e-76
Identity = 137/218 (62.84%), Postives = 154/218 (70.64%), Query Frame = 1 
Query:  172 AATCSAATTFGVPRLRDPLGTKPPLGKPQLGACGGGGDACGENGDP-PLFPSSAAVVAVADAVDEVWDSLSAWHQCFIDRWPPEPAASGEGGGEEAGRGTVGRVREPGDGPSSEGRLLVEDWLRCSEGDSRVCAERLRRLANGRASWGWPEACFLARDVADALLTGAIKLLPGGSPRGSTGAPCSPPILVVHTRLINHERCPPALYARGLSYLVQTLA 822
            AA   AATTF +PRLRDPLG KPP+ KP++           E+GDP P+ P       +AD VD+VW SL   HQCFIDRWPP+  A+GE         T    RE G GPS E RLL+EDWLRCS+G  RVCAERLRRLA+ RASW WPEACFLARDVAD LLTGA+KLLPG S  GS  AP SPPILVVHT L++HERCPPA Y +GLSYLVQTLA
Sbjct:  339 AALSPAATTFNIPRLRDPLGIKPPMRKPEME----------EDGDPSPVRP-------IADRVDQVWSSLVPRHQCFIDRWPPDEMAAGE---------TAEGGREQGAGPSLEARLLIEDWLRCSKGSPRVCAERLRRLADARASWRWPEACFLARDVADVLLTGAMKLLPGSSRGGS--APRSPPILVVHTHLVDHERCPPAQYTKGLSYLVQTLA 528
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BLAST of mRNA_H-canaliculatus_F_contig11405.1242.1 vs. uniprot
Match: D8LM65_ECTSI (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LM65_ECTSI)

HSP 1 Score: 239 bits (609), Expect = 7.560e-73
Identity = 161/274 (58.76%), Postives = 176/274 (64.23%), Query Frame = 1 
Query:  340 AVADAVDEVWDSLSAWHQCFIDRWPPEPAASGEGGGEEAGRGTVGRVREPGDGPSSEGRLLVEDWLRCSEGDSRVCAERLRRLANGRASWGWPEACFLARDVADALLTGAIKLLPGGSPRGSTGAPCSPPILVVHTRLINHERCPPALYARGLSYLVQTLAEGGRRAGAPARPEGRXXXXXXXXXXXXXXXXXXXXXXXXXXXXDRDVEDSXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGPGPAEVVLVIDAHKDTVGAKVKKIISLLIGEGG 1161
            A+AD VD+VW SL   HQCFIDRWPP+  A+G         GT    RE G GPS E RLL+E+WLR S+G  RVCAERLRRLA+ RASW WPEACFLARDVAD LLTGA+KLLPG S  GS  AP SPPILVVHTRL++HERCPPA Y +GLSYLVQTLA   RRA                  XXXXXXXXXXXXXXXXXX D +  +                                G AEV+LVIDAHKDTVGAKVKKIISL IG GG
Sbjct:   17 AIADPVDKVWTSLVPRHQCFIDRWPPDEMAAG---------GTAEGGREQGAGPSLEARLLIEEWLRSSKGSPRVCAERLRRLADARASWRWPEACFLARDVADVLLTGAMKLLPGSSRGGS--APRSPPILVVHTRLVDHERCPPAQYTKGLSYLVQTLAAE-RRANXXXXXX-----------XXXXXXXXXXXXXXXXXXGDSEESEGDYGGDVRHDSSGTGGGSPVPTGSTCSSDSERGQAEVILVIDAHKDTVGAKVKKIISLFIGGGG 267
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig11405.1242.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KAV8_9PHAE5.990e-7662.84Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LM65_ECTSI7.560e-7358.76Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig11405contigH-canaliculatus_F_contig11405:42..2626 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-18_002640.1
Exons5
Model size1234
Cds size1233
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig11405.1242.1prot_H-canaliculatus_F_contig11405.1242.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig11405 42..2626 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928824.549957-CDS-H-canaliculatus_F_contig11405:41..5511622928824.549957-CDS-H-canaliculatus_F_contig11405:41..551Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11405 42..551 +
1696845579.2099874-CDS-H-canaliculatus_F_contig11405:41..5511696845579.2099874-CDS-H-canaliculatus_F_contig11405:41..551Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11405 42..551 +
1622928824.5624278-CDS-H-canaliculatus_F_contig11405:963..11281622928824.5624278-CDS-H-canaliculatus_F_contig11405:963..1128Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11405 964..1128 +
1696845579.2185674-CDS-H-canaliculatus_F_contig11405:963..11281696845579.2185674-CDS-H-canaliculatus_F_contig11405:963..1128Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11405 964..1128 +
1622928824.5763018-CDS-H-canaliculatus_F_contig11405:1365..15491622928824.5763018-CDS-H-canaliculatus_F_contig11405:1365..1549Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11405 1366..1549 +
1696845579.2274373-CDS-H-canaliculatus_F_contig11405:1365..15491696845579.2274373-CDS-H-canaliculatus_F_contig11405:1365..1549Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11405 1366..1549 +
1622928824.5965867-CDS-H-canaliculatus_F_contig11405:1594..18031622928824.5965867-CDS-H-canaliculatus_F_contig11405:1594..1803Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11405 1595..1803 +
1696845579.2362173-CDS-H-canaliculatus_F_contig11405:1594..18031696845579.2362173-CDS-H-canaliculatus_F_contig11405:1594..1803Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11405 1595..1803 +
1622928824.6178226-CDS-H-canaliculatus_F_contig11405:2461..26261622928824.6178226-CDS-H-canaliculatus_F_contig11405:2461..2626Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11405 2462..2626 +
1696845579.245566-CDS-H-canaliculatus_F_contig11405:2461..26261696845579.245566-CDS-H-canaliculatus_F_contig11405:2461..2626Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11405 2462..2626 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig11405.1242.1

>prot_H-canaliculatus_F_contig11405.1242.1 ID=prot_H-canaliculatus_F_contig11405.1242.1|Name=mRNA_H-canaliculatus_F_contig11405.1242.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=411bp
EDEDSTTCSSDYDGRTGNVLGGVGGGGRVAGMAAALAAKAEAERRRRWRR
RRREEKLAATCSAATTFGVPRLRDPLGTKPPLGKPQLGACGGGGDACGEN
GDPPLFPSSAAVVAVADAVDEVWDSLSAWHQCFIDRWPPEPAASGEGGGE
EAGRGTVGRVREPGDGPSSEGRLLVEDWLRCSEGDSRVCAERLRRLANGR
ASWGWPEACFLARDVADALLTGAIKLLPGGSPRGSTGAPCSPPILVVHTR
LINHERCPPALYARGLSYLVQTLAEGGRRAGAPARPEGRGGGGGPAAAGA
GADVAALADFSAGFGFGDRDVEDSEDGASYGPGGGGGAGGASGRSPLSSS
SAGGPGPAEVVLVIDAHKDTVGAKVKKIISLLIGEGGAGGGGGGGDDRGS
GGARRGRDVSR
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mRNA from alignment at H-canaliculatus_F_contig11405:42..2626+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig11405.1242.1 ID=mRNA_H-canaliculatus_F_contig11405.1242.1|Name=mRNA_H-canaliculatus_F_contig11405.1242.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=2585bp|location=Sequence derived from alignment at H-canaliculatus_F_contig11405:42..2626+ (Hapterophycus canaliculatus Oshoro5f female)
GAAGACGAGGACAGCACCACATGCAGCAGCGACTACGACGGACGCACAGG
GAACGTTTTGGGCGGCGTTGGCGGTGGCGGGCGCGTGGCCGGAATGGCGG
CGGCGCTAGCGGCGAAGGCGGAAGCGGAGCGGAGGCGGCGCTGGCGGCGA
CGGCGGCGGGAGGAGAAACTCGCCGCCACCTGCTCAGCGGCCACTACCTT
CGGGGTCCCGCGCTTGCGCGACCCCCTTGGGACAAAGCCTCCGCTAGGGA
AACCCCAGCTGGGCGCGTGCGGCGGCGGCGGCGATGCGTGTGGAGAGAAC
GGCGACCCGCCCCTTTTTCCCTCGTCGGCCGCTGTCGTCGCCGTCGCCGA
CGCCGTGGATGAGGTGTGGGATAGCTTGTCGGCGTGGCACCAGTGCTTCA
TCGACAGGTGGCCGCCAGAGCCGGCAGCGTCCGGGGAGGGTGGGGGGGAA
GAAGCCGGACGAGGGACCGTAGGGCGGGTTCGAGAGCCCGGCGATGGCCC
GTCGTCCGAGGTGAGAGATCGCCAGCGGGACACGTGCGGACTTCTTCCGC
AGGGTGCGGACCACGTTGCCGTTCCGCGGACGACGGGATCTCCAGTGTTG
GAGAATCTTGTCCGCCCGGGGCTCCGAATTTCGTGCTTCCCCTTCTCGAC
CCTCTCACTCGCCTCCCCGCCCCTGGCACGGTCGGTGGAACCCATACCGT
GGAGGATTGTTCTTGGCGGTAGGAAATAATTTGTTTCAAGTCAAACGGTG
GATGATGTACTGCTGCAGGCGGCCGATCAATCCCCGTGCCGTCGCCGGCG
TATCGGCTCCTCTTCCGCAAGCATCGCCATCGCATCTCTCGGCACGGCCG
ACCGCCTTCTGCTGCGCCCCCGCCTCCTCACACCCCTGGTCCGGCGCCGA
ACCCCCCCCCCCCCTGCACCAGGGGCGTCTGCTGGTGGAGGACTGGCTCC
GCTGCAGCGAGGGCGACTCCCGTGTCTGCGCCGAGCGGCTCCGCCGACTC
GCGAACGGACGGGCCTCCTGGGGATGGCCGGAGGCGTGTTTCCTGGCACG
GGACGTGGCGGACGCCCTCCTCACGGGCGCGATTAAGGTGGGTCTCGCGA
CCGCGATGTTCGTGTGGCGTGCGGAGGGTCGCGCGTGCGTTTGCGTGCGC
GAAGAGGCTCGAGCTTTCATGCTCTCTGCTGCGGTTTTGCGGTTTTTGTT
TGCGTCTCGCATGCGCGGCCGGCGAATCCCTCCTTCGGTCTTGAAACCCC
GCCGCGCGTCTCCTCGCCTCCGTCCGAAACGGCCGTCTGCGAACGAAACC
CCGCGCCTTGCGCCTGAGAAACAGCTGCTCCCCGGCGGCTCGCCGAGAGG
ATCGACGGGGGCTCCGTGTTCTCCCCCCATCCTCGTCGTGCATACCCGGC
TCATCAACCACGAGCGGTGCCCCCCGGCGCTGTACGCCAGAGGCCTGAGC
TACCTCGTGCAGACTCTGGCGGAGGGAGGGAGGAGGGCGGGGGCGCCGGC
GAGGCCAGGTTGCGGCGACGACGTTGCCAGCGGAGGGGGGCCGGCGGGGG
CAGAAGGACGAGGCGGCGGCGGCGGTCCTGCAGCAGCAGGCGCCGGGGCG
GACGTCGCGGCCCTCGCCGATTTTTCCGCGGGGTTCGGATTCGGCGACCG
CGATGTCGAGGACAGCGAAGACGGTGCCTCCTACGGCCCCGGCGGCGGCG
GCGGCGCTGGTGGTGCTAGTGGCCGCTCCCCACTCTCTTCTTCAAGTGCT
GGCGGGCCGGGGGTCGACAGCTGCGAGGTGCGCGTGTGCGTGTATGTACG
CGTCCCACTCTCTTTTTTTTTTTGGTTCCTTGTGTCTGGTGCCGTTCCGC
TGTTTGCGGCGGCTGTCTGCGGCGGCTGTCTTGCTTCTGATTCGGTGGGG
GGGCTCTGAATTTTTCGCCGGGACGAATCGGCGCATGGCGCGCGCATGGG
AGGACGAAAGAGTGGCACGCCGCCTGCGCTCGCGAGGAGATTCTCCCCTA
GGGTTGGGAAGCGCTGCCTCCGCAACAACCTGTCTGGGGGCGTCGGCGAC
GATCGCAGCTTCTCCCGCGATTGAATGATGGCGCGATTGAATGATGGCGG
GGGCATAAAGCGTGGAGAGACGAAAGAAGCGCAGCTCCGGCCGGCACCAC
CACAAAGGATGTCGATCCAAAACGTGTCTTTGATCGGGCACGGCCACCGA
GAAGGCGCTTCTCCGGAACGAGAGCGACCACCGGTGTGTCCTTGTGGTGT
CGCGGTTGATTCATGCCAACCACCACCACCACCACCACCACCATCACCAC
TGCAGCTTCTGCTGCCATGCATGCCGCTCGTAAACATGCAACTCCTATCG
AAAATAACCCCCCCCGGGCACGCTACCGCTTGCTCCGCGCCCGCATCACA
TGGACGAACCCCAGGGGGAGCCCGCGGAGGTAGTCTTGGTGATCGACGCC
CACAAGGACACCGTGGGGGCCAAGGTCAAGAAGATCATCAGCCTCCTGAT
CGGGGAGGGCGGGGCTGGGGGCGGGGGCGGGGGCGGGGACGACAGGGGAA
GCGGCGGGGCCAGGAGGGGGCGCGATGTTTCGAGA
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig11405:42..2626+

>mRNA_H-canaliculatus_F_contig11405.1242.1 ID=mRNA_H-canaliculatus_F_contig11405.1242.1|Name=mRNA_H-canaliculatus_F_contig11405.1242.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=2466bp|location=Sequence derived from alignment at H-canaliculatus_F_contig11405:42..2626+ (Hapterophycus canaliculatus Oshoro5f female)
GAAGACGAGGACAGCACCACATGCAGCAGCGACTACGACGGACGCACAGG
GAACGTTTTGGGCGGCGTTGGCGGTGGCGGGCGCGTGGCCGGAATGGCGG
CGGCGCTAGCGGCGAAGGCGGAAGCGGAGCGGAGGCGGCGCTGGCGGCGA
CGGCGGCGGGAGGAGAAACTCGCCGCCACCTGCTCAGCGGCCACTACCTT
CGGGGTCCCGCGCTTGCGCGACCCCCTTGGGACAAAGCCTCCGCTAGGGA
AACCCCAGCTGGGCGCGTGCGGCGGCGGCGGCGATGCGTGTGGAGAGAAC
GGCGACCCGCCCCTTTTTCCCTCGTCGGCCGCTGTCGTCGCCGTCGCCGA
CGCCGTGGATGAGGTGTGGGATAGCTTGTCGGCGTGGCACCAGTGCTTCA
TCGACAGGTGGCCGCCAGAGCCGGCAGCGTCCGGGGAGGGTGGGGGGGAA
GAAGCCGGACGAGGGACCGTAGGGCGGGTTCGAGAGCCCGGCGATGGCCC
GTCGTCCGAGGAAGACGAGGACAGCACCACATGCAGCAGCGACTACGACG
GACGCACAGGGAACGTTTTGGGCGGCGTTGGCGGTGGCGGGCGCGTGGCC
GGAATGGCGGCGGCGCTAGCGGCGAAGGCGGAAGCGGAGCGGAGGCGGCG
CTGGCGGCGACGGCGGCGGGAGGAGAAACTCGCCGCCACCTGCTCAGCGG
CCACTACCTTCGGGGTCCCGCGCTTGCGCGACCCCCTTGGGACAAAGCCT
CCGCTAGGGAAACCCCAGCTGGGCGCGTGCGGCGGCGGCGGCGATGCGTG
TGGAGAGAACGGCGACCCGCCCCTTTTTCCCTCGTCGGCCGCTGTCGTCG
CCGTCGCCGACGCCGTGGATGAGGTGTGGGATAGCTTGTCGGCGTGGCAC
CAGTGCTTCATCGACAGGTGGCCGCCAGAGCCGGCAGCGTCCGGGGAGGG
TGGGGGGGAAGAAGCCGGACGAGGGACCGTAGGGCGGGTTCGAGAGCCCG
GCGATGGCCCGTCGTCCGAGGGGCGTCTGCTGGTGGAGGACTGGCTCCGC
TGCAGCGAGGGCGACTCCCGTGTCTGCGCCGAGCGGCTCCGCCGACTCGC
GAACGGACGGGCCTCCTGGGGATGGCCGGAGGCGTGTTTCCTGGCACGGG
ACGTGGCGGACGCCCTCCTCACGGGCGCGATTAAGGGGCGTCTGCTGGTG
GAGGACTGGCTCCGCTGCAGCGAGGGCGACTCCCGTGTCTGCGCCGAGCG
GCTCCGCCGACTCGCGAACGGACGGGCCTCCTGGGGATGGCCGGAGGCGT
GTTTCCTGGCACGGGACGTGGCGGACGCCCTCCTCACGGGCGCGATTAAG
CTGCTCCCCGGCGGCTCGCCGAGAGGATCGACGGGGGCTCCGTGTTCTCC
CCCCATCCTCGTCGTGCATACCCGGCTCATCAACCACGAGCGGTGCCCCC
CGGCGCTGTACGCCAGAGGCCTGAGCTACCTCGTGCAGACTCTGGCGGAG
GGAGGGAGGAGGGCGGGGGCGCCGGCGAGGCCAGCTGCTCCCCGGCGGCT
CGCCGAGAGGATCGACGGGGGCTCCGTGTTCTCCCCCCATCCTCGTCGTG
CATACCCGGCTCATCAACCACGAGCGGTGCCCCCCGGCGCTGTACGCCAG
AGGCCTGAGCTACCTCGTGCAGACTCTGGCGGAGGGAGGGAGGAGGGCGG
GGGCGCCGGCGAGGCCAGAAGGACGAGGCGGCGGCGGCGGTCCTGCAGCA
GCAGGCGCCGGGGCGGACGTCGCGGCCCTCGCCGATTTTTCCGCGGGGTT
CGGATTCGGCGACCGCGATGTCGAGGACAGCGAAGACGGTGCCTCCTACG
GCCCCGGCGGCGGCGGCGGCGCTGGTGGTGCTAGTGGCCGCTCCCCACTC
TCTTCTTCAAGTGCTGGCGGGCCGGGGAAGGACGAGGCGGCGGCGGCGGT
CCTGCAGCAGCAGGCGCCGGGGCGGACGTCGCGGCCCTCGCCGATTTTTC
CGCGGGGTTCGGATTCGGCGACCGCGATGTCGAGGACAGCGAAGACGGTG
CCTCCTACGGCCCCGGCGGCGGCGGCGGCGCTGGTGGTGCTAGTGGCCGC
TCCCCACTCTCTTCTTCAAGTGCTGGCGGGCCGGGGCCCGCGGAGGTAGT
CTTGGTGATCGACGCCCACAAGGACACCGTGGGGGCCAAGGTCAAGAAGA
TCATCAGCCTCCTGATCGGGGAGGGCGGGGCTGGGGGCGGGGGCGGGGGC
GGGGACGACAGGGGAAGCGGCGGGGCCAGGAGGGGGCGCGATGTTTCGAG
ACCCGCGGAGGTAGTCTTGGTGATCGACGCCCACAAGGACACCGTGGGGG
CCAAGGTCAAGAAGATCATCAGCCTCCTGATCGGGGAGGGCGGGGCTGGG
GGCGGGGGCGGGGGCGGGGACGACAGGGGAAGCGGCGGGGCCAGGAGGGG
GCGCGATGTTTCGAGA
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