mRNA_H-canaliculatus_F_contig114.1235.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig114.1235.1
Unique NamemRNA_H-canaliculatus_F_contig114.1235.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
[Close]
BLAST of mRNA_H-canaliculatus_F_contig114.1235.1 vs. uniprot
Match: A0A6H5L7J5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7J5_9PHAE)

HSP 1 Score: 476 bits (1226), Expect = 8.910e-134
Identity = 485/1057 (45.88%), Postives = 586/1057 (55.44%), Query Frame = 1 
Query:  382 PSSPPTQSGVQDSALAQAHDVTRAEQIDREFEAMLGQRSYREKRETMNFLADPNTRPVDPRFPQLSAERKRRILQAGRSAKTWDVTPILANDQEGQACILANERERKESRASLGEEGDEDWRSAPSSEWIELVPCMKRRLRQSSLRRAPRPGPPTTQGTLGSAFVCFK--NAPSAAAEGKNKRPRLETRPGYDGDELTPMLRRLDEQDRGSSVSQSQSQSDFGRPAADRSPRTP-FSGAS-LSLARPAA-GAVSRTPQPRKVARLSTGGSSVNRRGSIGMPLRYRQRDFTPGRGRASLAGXXXXXXXGERTHGAGTLGDWLGEAGKQPGPAGGNDRRSSSSSGLSNSDGIEKRGGLSSKRRAEGQDPHP---DGPGPQARGSPAAAGNKRAASSLCLEGMDATPRRKMQAV--DAALTDEGKRLLQKVEAEAKATAEVGSILLSVVSQESKARDVTRQVREGQAL----STNKQEERERPSRKQ--------VAEERGNG---EQKLEQTKALRSKARSETASFTFGTSPLPLPSALTRPAETHDPSDFVFSTSQAPARF---VQQADDARNEDENEDAMSME----DASGSAFAFGAPSSRHAPLHL--HRAEPSFRFSVPTPATRAIHGGERGAGALVLAPGDDGDDGEDHMAEDAP-GHFEFSTKPRKARKTKGGVAAGRSAAGQ-MSSLDSAPXXXXXXXXXXXXXXXXXXXXXVTSTALAGTSATPVSGAITNGFDMSMFSKPGEWKCESCLVRNPSGTDKCASCETLKPGASGGSAAASGGIFASAASSSA-PTFTFGVQPGGGAPGGVSAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPSTP-APALGGFDMSKFSKPGEWKCDACLVRNSPADTKCASCETPRSGTSGGSGAAXXXX--ILAGANSSAGSV-FSFGVQPAATVATVS-----STTPSATPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPLAPVGVDGVGG---RVAAAAANGGGVG---SFIGGSSAPSG-FTF-GAPIGSAAASTASAAPSFGISGAPSA 3390
            PSSP    G      A+A    RA+Q++ E +A+LG+RSY EKR+ + FLADP  RP +PR P L AE+KRR+ +A R  ++WD  PILA DQEGQA  LA+ER  K +    G  GD+ WR APSSEW  LVP M+RR  Q ++R        +T+ TLGSAF  F      +AA        +L  RPGYDGDELTPML+RLDEQDR  + + + ++    RPA D       F+GA+ LSL R AA G  SRTP+P +       G++ +RR S+G  LRYR R+FTP R R SLA        GE+ +GAGTLGDWLGE  KQP P                          +SKRRA  +   P    G   Q  G+PAA+ NKRAASSL L+GMDATPRRK  A+  + A+ +EG+ L+++V AEAKATAEVGSIL+SVVSQES+ RDVTRQVRE Q L    +  K E  +R    Q        VA+ RG+    E++ E+ K    + RSETASFTF  +  P  +   + A   + S+F F+TS  PAR     QQ +   N+   + AMS++    D  G  FAFGAPS+ H P      + +P F FS P P  RA+  G+ G+   VL   DD       M  D P G FEFSTKPRKAR+T+ GVAAG+SA  Q M+ L  AP                         ++AG+                    PGEWKC +CLVRNP    KC SCE  KPGAS  +                 P FTFGV P         A XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX  ST  AP  GGFDMSKF KPGEWKCDACLVRN P  TKC SCE P+ G SGG+   XXXX  IL GA +S  +  FSFGVQPA            ST PSA P        XXXXXX               P AP G D VGG      A+A+  GGVG   S  G SSAPSG FTF GAP  SA+ +  +A PS G+ G PSA
Sbjct: 1770 PSSPGRADG------ARATGRGRAKQLNEELDAVLGKRSYGEKRDLVGFLADPTARPANPRVPVLPAEQKRRVRRASRPVESWDERPILAIDQEGQAEDLADERTTKRAGVWCGATGDK-WRRAPSSEWTRLVPTMQRRAGQPAVRAVA-----STKRTLGSAFGAFTALGTSAAAVHLAGDLRKLSARPGYDGDELTPMLQRLDEQDRDDAATAAAARR---RPAPDAGAMASGFTGATNLSLVRAAAAGTPSRTPKPARAGGGLGVGAARDRRQSVGSALRYRSREFTPRR-RPSLA------VAGEQRYGAGTLGDWLGETPKQPRPGXXXXXXXXXXXXXXXXXXXXXXXXQASKRRAVRRQESPLLVQGLQGQENGTPAAS-NKRAASSLGLDGMDATPRRKTMAIMEERAVAEEGRELVRRVAAEAKATAEVGSILMSVVSQESRGRDVTRQVREEQGLRERETQKKTELNQRAGGNQPTTGEAGKVADVRGSPGHEEREEERRKQDDKRGRSETASFTFAAATRPPVAVAPQAAAWRESSEFGFTTSPGPARLRLQQQQENGDANDGWGDGAMSVDSLYPDCDGD-FAFGAPSASHPPARSAQRQQQPLFCFSNPPPVKRALEYGQ-GSETGVLTTTDD-------MGRDIPAGAFEFSTKPRKARRTRRGVAAGKSAVEQQMAPLAVAPL------------------------SVAGSG----DXXXXXXXXAKTSEPPGEWKCGACLVRNPPDATKCLSCEVPKPGASPAAXXXXXXXXXXXXXXXXXPKFTFGVVP--------DAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSASTSTAPTAGGFDMSKFRKPGEWKCDACLVRNPPDATKCLSCEVPKPGASGGASXXXXXXXXILGGAGASTSAHNFSFGVQPAKAAXXXXXXXXXSTAPSA-PGFSFGAAKXXXXXXAAPVGKKAAFTFGAQPAAPGG-DNVGGGXXXTPASASASGGVGLLGSLGGTSSAPSGAFTFRGAPSASASTTAXAAPPSSGMFGMPSA 2756
[Close]
BLAST of mRNA_H-canaliculatus_F_contig114.1235.1 vs. uniprot
Match: D7FVB0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVB0_ECTSI)

HSP 1 Score: 443 bits (1139), Expect = 5.070e-123
Identity = 427/950 (44.95%), Postives = 518/950 (54.53%), Query Frame = 1 
Query:  382 PSSPPTQSGVQDSALAQAHDVTRAEQIDREFEAMLGQRSYREKRETMNFLADPNTRPVDPRFPQLSAERKRRILQAGRSAKTWDVTPILANDQEGQACILANERERKESRASLGEEGDEDWRSAPSSEWIELVPCMKRRLRQSSLRRAPRPGPPTTQGTLGSAFVCF--KNAPSAAAEGKNKRPRLETRPGYDGDELTPMLRRLDEQDRGSSVSQSQSQSDFGRPAADRSPRTPFSGASLSLARPAAGAVSRTPQPRKVARLSTGG---SSVNRRGSIGMPLRYRQRDFTPGRGRASLAGXXXXXXXGERTHGAGTLGDWLGEAGKQPGPAGGNDRRSSSSSGLSNSDGIEKRGGLSSKRRAEGQDPHP---DGPGPQARGSPAAAGNKRAASSLCLEGMDATPRRKMQAV--DAALTDEGKRLLQKVEAEAKATAEVGSILLSVVSQESKARDVTRQVREGQAL---STNKQEE-RERPSRKQ-----------VAEERGNGEQKLEQTKAL--RSKARSETASFTFGTSPLPLPSALT-RPAETHDPSDFVFSTS-QAPARFVQQADDARNEDENED---AMSME----DASGSAFAFGAPSSRHAPLHL---HRAEPSFRFSVPTPATRAIHGGERGAGALVLAPGDDGDDGEDHMAEDAP-GHFEFSTKPRKARKTKGGVAAGRSAAGQ-MSSLDSAPXXXXXXXXXXXXXXXXXXXXXVTSTALAGTSATPVSGAITNGFDMSMFSKPGEWKCESCLVRNPSGTDKCASCETLKPGASGGSAAASGGIFASAASSS-APTFTFGVQPGGGAPGGVSAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPSTPAPALGGFDMSKFSKPGEWKCDACLVRNSPADTKCASCETPRSGTSGGSGAAXXXX---ILAGANSSAGSV-FSFGVQPAATVATVSSTT 3093
            PSSP    G +    A+A    RA+Q++ E +++LG+RSY EKR+ + FLADP  RP +PR P L AE+KRR+ +A R  ++WD  PIL  DQEGQA  LA+ER  K + A  G  GD+ WR APSSEW  LVP M+RR  Q  +R        +T+ TLGSAF  F  +   +AA        +L  RPGYDGDELTPMLRRLDEQDR  +                                                         ++ +RR S+G  LRYR R+FTP R R SLA        GE+  GAGTLGDWLGEA KQP P                        G +SKRR  G+   P   +G   Q  G+PAA+ NKRAASSL L+GMDATPRRK  A+  + A+ +EG+ L+++V AEAKATAEVGSIL+SVVSQE+K RDVTRQVRE Q L    TNK+ E  +R    Q           V + RG  E+++++ +    + + RSETASFTF  +   LP A+  + A + + S+F F+TS + PAR                   AMS++    D  G  FAFG PS+ H P       + +P F FS P P  RA+  G+ G+   VL   DD       M  D P G FEFSTKPRKAR+T+ GVAAG+SA  Q M+ L  AP                       S   AG +A   S  ITNGFDMS F KPGEWKC +CLVRNP    KC SCE  KPGAS                    P FTFGV P  GA         XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX ++ AP  GGFDMSKF KPGEWKC ACLVRN P  TKC SCE PR G S G+   XXXX   IL GA +S  +  FSFGVQPA   AT +++T
Sbjct: 1493 PSSPGRADGARG---ARATGRGRAKQVNEELDSVLGKRSYGEKRDLVGFLADPTARPANPRVPVLPAEQKRRVRRAARPVESWDERPILDIDQEGQAEDLADERTTKRAGAWCGATGDK-WRRAPSSEWTRLVPTMQRRAGQPVVRVVA-----STKRTLGSAFGTFTARGTSAAAVHHAGDLRKLSARPGYDGDELTPMLRRLDEQDRDDAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAARDRRQSVGSALRYRSREFTPRR-RPSLA------MAGEQRFGAGTLGDWLGEAPKQPRPGPVGAAAXXXXXXXXXXXXXXTGQGQASKRREVGRQESPLLVEGSQGQESGTPAAS-NKRAASSLGLDGMDATPRRKTMAMMDERAVAEEGRELVRRVAAEAKATAEVGSILMSVVSQENKGRDVTRQVREEQGLRERETNKKTELNQRAGGTQPTIGEAGKVADVRDSRGQEEREVKERRKQDEKKRGRSETASFTFAAA-TQLPVAVAPQAAASRESSEFGFTTSPKGPARLXXXXXXXXXXXXXXXXXGAMSVDSMYPDCDGD-FAFGVPSASHPPARSAQRQQQQPLFCFSDPPPVKRALEHGQ-GSETGVLTTTDD-------MGRDVPAGAFEFSTKPRKARRTRRGVAAGKSAVEQQMAPLAVAPLSVAGSGGGAKTSEP--------SKVAAGAAAAS-SAPITNGFDMSKFRKPGEWKCGACLVRNPPDATKCLSCEVPKPGASAXXXXXXXXXXXXXXXXXXTPKFTFGVVPDAGA-------ASXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTSTAPTAGGFDMSKFRKPGEWKCAACLVRNPPDATKCLSCEVPRPGVSDGASPXXXXXXXXILGGAGASTSAPKFSFGVQPAKAAATAAAST 2399
[Close]
BLAST of mRNA_H-canaliculatus_F_contig114.1235.1 vs. uniprot
Match: A0A6F9AYS9_9TELE (Uncharacterized protein n=4 Tax=Coregonus TaxID=27772 RepID=A0A6F9AYS9_9TELE)

HSP 1 Score: 68.2 bits (165), Expect = 2.170e-7
Identity = 48/175 (27.43%), Postives = 66/175 (37.71%), Query Frame = 1 
Query: 2434 STALAGTSATPVSGAITNGFDMSMFSKPGEWKCESCLVRNPSGTDKCASCETLKPGASGGSAAASGGIFASAASSSAPTFTFGVQPGGGAPGGVSAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPSTPAPALGGFDMSKFSKPGEWKCDACLVRNSPADTKCASCETP 2958
            +TA     + P +   ++GF +    KPG+W+C++CLVRN      C SC+T    A          +   AA+S   T  F    G G   G   G                                     P P + GF      K  +W CD CLVRN  + +KC SC+TP
Sbjct: 1445 TTAEVAAESKPSTIPFSSGFGVQFGKKPGQWECDTCLVRNEEFASSCVSCQTPNQAAKT--------VVDGAAASKPSTIPF--SSGFGVQFGKKPGQWECDTCLVKNEEFASSCVSCQTPNPTAKSTVEVAPPPKPTVSGFGGLFSKKDRQWDCDTCLVRNDASASKCISCQTP 1609
[Close]
BLAST of mRNA_H-canaliculatus_F_contig114.1235.1 vs. uniprot
Match: UPI001E1C7C7C (E3 SUMO-protein ligase RanBP2 isoform X3 n=1 Tax=Coregonus clupeaformis TaxID=59861 RepID=UPI001E1C7C7C)

HSP 1 Score: 67.0 bits (162), Expect = 4.870e-7
Identity = 48/175 (27.43%), Postives = 66/175 (37.71%), Query Frame = 1 
Query: 2434 STALAGTSATPVSGAITNGFDMSMFSKPGEWKCESCLVRNPSGTDKCASCETLKPGASGGSAAASGGIFASAASSSAPTFTFGVQPGGGAPGGVSAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPSTPAPALGGFDMSKFSKPGEWKCDACLVRNSPADTKCASCETP 2958
            +TA     + P +   ++GF +    KPG+W+C++CLVRN      C SC+T           A   +   AA+S   T  F    G G   G   G                                     P P + GF      K  +W CD CLVRN  + +KC SC+TP
Sbjct: 1453 TTAEVAAESKPSTIPFSSGFGVQFGKKPGQWECDTCLVRNEEFASSCVSCQTPNQ--------ADKTVVDGAAASMPSTIPF--SSGFGVQFGKKPGQWECDTCLVRNEEFASSCVSCQTPNPTAKSTVEVAPPPKPTVSGFGDLFSKKDRQWDCDTCLVRNDASASKCISCQTP 1617
[Close]
BLAST of mRNA_H-canaliculatus_F_contig114.1235.1 vs. uniprot
Match: UPI001E1C888B (E3 SUMO-protein ligase RanBP2 isoform X2 n=1 Tax=Coregonus clupeaformis TaxID=59861 RepID=UPI001E1C888B)

HSP 1 Score: 67.0 bits (162), Expect = 4.870e-7
Identity = 48/175 (27.43%), Postives = 66/175 (37.71%), Query Frame = 1 
Query: 2434 STALAGTSATPVSGAITNGFDMSMFSKPGEWKCESCLVRNPSGTDKCASCETLKPGASGGSAAASGGIFASAASSSAPTFTFGVQPGGGAPGGVSAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPSTPAPALGGFDMSKFSKPGEWKCDACLVRNSPADTKCASCETP 2958
            +TA     + P +   ++GF +    KPG+W+C++CLVRN      C SC+T           A   +   AA+S   T  F    G G   G   G                                     P P + GF      K  +W CD CLVRN  + +KC SC+TP
Sbjct: 1453 TTAEVAAESKPSTIPFSSGFGVQFGKKPGQWECDTCLVRNEEFASSCVSCQTPNQ--------ADKTVVDGAAASMPSTIPF--SSGFGVQFGKKPGQWECDTCLVRNEEFASSCVSCQTPNPTAKSTVEVAPPPKPTVSGFGDLFSKKDRQWDCDTCLVRNDASASKCISCQTP 1617
[Close]
BLAST of mRNA_H-canaliculatus_F_contig114.1235.1 vs. uniprot
Match: UPI0019018110 (E3 SUMO-protein ligase RanBP2-like n=1 Tax=Salvelinus namaycush TaxID=8040 RepID=UPI0019018110)

HSP 1 Score: 65.9 bits (159), Expect = 1.100e-6
Identity = 50/177 (28.25%), Postives = 64/177 (36.16%), Query Frame = 1 
Query: 2476 AITNGFDMSMFSKPGEWKCESCLVRNPSGTDKCASCETLKPGASGGSAAASGGIFASAASSSAPTFTFGVQ--------PGGGAPGGVSAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPSTPAPALGGFDMSKFSKPGEWKCDACLVRNSPADTKCASCETPRSGTSGGS 2982
            +I +GF      KPG+W+C++CLVRN      C SC+T  P A              AA S   T +FG           G GA      G                                  P T  P +  F  +   K  +W CD CLVRN  + +KC SC+TP    S  S
Sbjct: 1554 SIGSGFGAQFGKKPGQWECDTCLVRNEESASSCVSCQTPNPVAKTD--------VDGAAESKPSTMSFGAPGLATLSTGSGFGAQFSKKPGQWDCDTCVVRNEASSSSCVSCQTPNPSAKSTVEVPPTTKPTVSDFGDAFSRKDVQWDCDTCLVRNDASASKCVSCQTPNPNASSSS 1722
[Close]
BLAST of mRNA_H-canaliculatus_F_contig114.1235.1 vs. uniprot
Match: UPI000CDFB646 (E3 SUMO-protein ligase RanBP2 n=1 Tax=Salvelinus alpinus TaxID=8036 RepID=UPI000CDFB646)

HSP 1 Score: 65.9 bits (159), Expect = 1.130e-6
Identity = 54/191 (28.27%), Postives = 70/191 (36.65%), Query Frame = 1 
Query: 2455 SATPVSGA-------ITNGFDMSMFSKPGEWKCESCLVRNPSGTDKCASCETLKPGASGGSAAASGGIFASAASSSAPTFTFGV--------QPGGGAPGGVSAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPSTPAPALGGFDMSKFSKPGEWKCDACLVRNSPADTKCASCETPRSGTSGGS 2982
            S  P +GA       I +GF      KPG+W+C++CLVRN      C SC+T  P A              AA S   T +FG         + G GA    + G     X                              T  P +  F  +   K  +W CD CLVRN  + +KC SC+TP    S  S
Sbjct: 3288 SGKPAAGAPALATLSIGSGFGAQFGKKPGQWECDTCLVRNEESASSCVSCQTPNPVAKTD--------VDGAAESKPSTMSFGAXGLATLSTRSGFGAQFSKNXGHWDCDXCVVRNEASSSSCVSCQTPNPSAKSTVEVAPTTKPTVSDFGAAXSRKDVQWDCDTCLVRNDASASKCVSCQTPNPNASSSS 3470
[Close]
BLAST of mRNA_H-canaliculatus_F_contig114.1235.1 vs. uniprot
Match: UPI0011305C81 (RANBP2-like and GRIP domain-containing protein 5/6 n=1 Tax=Oncorhynchus nerka TaxID=8023 RepID=UPI0011305C81)

HSP 1 Score: 63.2 bits (152), Expect = 7.120e-6
Identity = 49/181 (27.07%), Postives = 64/181 (35.36%), Query Frame = 1 
Query: 2476 AITNGFDMSMFSKPGEWKCESCLVRNPSGTDKCASCET----LKPGASGGSAAASGGIFASAASSSAPTFTFG--------VQPGGGAPGGVSAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPSTPAPALGGFDMSKFSKPGEWKCDACLVRNSPADTKCASCETPRSGTSGGS 2982
            +I +GF      KPG+W+C++CLVRN      C SC+T     K    G            AA S   T  FG        +  G G   G   G                                    T  P +  F  +   K G+W CD CL+RN  + +KC SC+TP    S  S
Sbjct: 1530 SIGSGFGAQFGKKPGQWECDTCLVRNEESASSCVSCQTPNNVAKTDVDG------------AAESKPSTMPFGAPALATLSIGSGFGEQFGKKPGQWECDTCLVRNEESASSCVSCQTPNPTAKSTVEVAPTTEPTVSDFGAAFSRKDGQWDCDTCLMRNDASASKCVSCQTPNPNASSSS 1698
[Close]
BLAST of mRNA_H-canaliculatus_F_contig114.1235.1 vs. uniprot
Match: A0A835ZBV9_9STRA (RanBP2-type domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZBV9_9STRA)

HSP 1 Score: 57.4 bits (137), Expect = 1.040e-5
Identity = 26/36 (72.22%), Postives = 29/36 (80.56%), Query Frame = 1 
Query: 2860 DMSKFSKPGEWKCDACLVRNSPADTKCASCETPRSG 2967
            DM K +  GEWKCDACLVRN+P  TKCASCETP +G
Sbjct:   72 DMFKAAA-GEWKCDACLVRNAPGATKCASCETPAAG 106
[Close]
BLAST of mRNA_H-canaliculatus_F_contig114.1235.1 vs. uniprot
Match: UPI001877D76A (E3 SUMO-protein ligase RanBP2-like n=1 Tax=Oncorhynchus mykiss TaxID=8022 RepID=UPI001877D76A)

HSP 1 Score: 61.2 bits (147), Expect = 2.710e-5
Identity = 53/191 (27.75%), Postives = 67/191 (35.08%), Query Frame = 1 
Query: 2455 SATPVSGA-------ITNGFDMSMFSKPGEWKCESCLVRNPSGTDKCASCETLKPGASGGSAAASGGIFASAASSSAPTFTFG------VQPGG--GAPGGVSAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPSTPAPALGGFDMSKFSKPGEWKCDACLVRNSPADTKCASCETPRSGTSGGS 2982
            S  P +GA       I +GF      KPG+W+C++CLVRN      C SC+T    A              AA S   T  FG      +  G   GA      G                                    T  P +  F  +   K G+W CD CLVRN  + +KC SC+TP    S  S
Sbjct:  967 SGKPAAGAPALATLSIGSGFGAQFGKKPGQWECDTCLVRNEESASSCVSCQTPNSVAKTD--------VDEAAESKPSTMPFGAPALATLSTGSEFGAQFSKKLGQWDCDTCVVRNEASSSSCVSCQTPNPSAKSTVEVAPTTEPTVSDFGAAFSRKDGQWDCDTCLVRNDASASKCVSCQTPNPNASSSS 1149
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig114.1235.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 19
Match NameE-valueIdentityDescription
A0A6H5L7J5_9PHAE8.910e-13445.88Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FVB0_ECTSI5.070e-12344.95Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6F9AYS9_9TELE2.170e-727.43Uncharacterized protein n=4 Tax=Coregonus TaxID=27... [more]
UPI001E1C7C7C4.870e-727.43E3 SUMO-protein ligase RanBP2 isoform X3 n=1 Tax=C... [more]
UPI001E1C888B4.870e-727.43E3 SUMO-protein ligase RanBP2 isoform X2 n=1 Tax=C... [more]
UPI00190181101.100e-628.25E3 SUMO-protein ligase RanBP2-like n=1 Tax=Salveli... [more]
UPI000CDFB6461.130e-628.27E3 SUMO-protein ligase RanBP2 n=1 Tax=Salvelinus a... [more]
UPI0011305C817.120e-627.07RANBP2-like and GRIP domain-containing protein 5/6... [more]
A0A835ZBV9_9STRA1.040e-572.22RanBP2-type domain-containing protein (Fragment) n... [more]
UPI001877D76A2.710e-527.75E3 SUMO-protein ligase RanBP2-like n=1 Tax=Oncorhy... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig114contigH-canaliculatus_F_contig114:488..6996 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score465.3
Seed ortholog evalue9.1e-128
Seed eggNOG ortholog2880.D7FVB0
KEGG koko:K15304,ko:K17302,ko:K20282
KEGG Pathwayko05166,map05166
GOsGO:0000054,GO:0000056,GO:0000082,GO:0000226,GO:0000278,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005829,GO:0006355,GO:0006403,GO:0006405,GO:0006508,GO:0006511,GO:0006606,GO:0006611,GO:0006807,GO:0006810,GO:0006886,GO:0006913,GO:0006996,GO:0007010,GO:0007017,GO:0007049,GO:0007051,GO:0008104,GO:0008150,GO:0008152,GO:0008536,GO:0009056,GO:0009057,GO:0009889,GO:0009987,GO:0010468,GO:0010556,GO:0015031,GO:0015833,GO:0015931,GO:0016043,GO:0017016,GO:0017038,GO:0019219,GO:0019222,GO:0019538,GO:0019899,GO:0019941,GO:0022402,GO:0022613,GO:0030163,GO:0031267,GO:0031323,GO:0031326,GO:0031503,GO:0031935,GO:0031938,GO:0033036,GO:0033043,GO:0033044,GO:0033365,GO:0033750,GO:0034504,GO:0034613,GO:0042254,GO:0042886,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043632,GO:0044085,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044424,GO:0044444,GO:0044464,GO:0044770,GO:0044772,GO:0044843,GO:0045184,GO:0046907,GO:0050657,GO:0050658,GO:0050789,GO:0050794,GO:0051020,GO:0051128,GO:0051168,GO:0051169,GO:0051170,GO:0051171,GO:0051179,GO:0051234,GO:0051236,GO:0051252,GO:0051603,GO:0051640,GO:0051641,GO:0051649,GO:0051656,GO:0060255,GO:0060968,GO:0065007,GO:0070727,GO:0071166,GO:0071426,GO:0071428,GO:0071702,GO:0071704,GO:0071705,GO:0071840,GO:0072594,GO:0080090,GO:1901564,GO:1901565,GO:1901575,GO:1902275,GO:1903047,GO:1903506,GO:2000112,GO:2001141
EggNOG free text desc.Ran GTPase binding
EggNOG OGsCOG5171@1,KOG0864@2759
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko04131,ko04147
Hectar predicted targeting categoryother localisation
Exons3
Model size5480
Cds size3843
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig114.1235.1prot_H-canaliculatus_F_contig114.1235.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig114 611..5482 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928823.12271-UTR-H-canaliculatus_F_contig114:487..6101622928823.12271-UTR-H-canaliculatus_F_contig114:487..610Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig114 488..610 +
1696845578.3736947-UTR-H-canaliculatus_F_contig114:487..6101696845578.3736947-UTR-H-canaliculatus_F_contig114:487..610Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig114 488..610 +
1622928823.196919-UTR-H-canaliculatus_F_contig114:5482..69961622928823.196919-UTR-H-canaliculatus_F_contig114:5482..6996Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig114 5483..6996 +
1696845578.4164555-UTR-H-canaliculatus_F_contig114:5482..69961696845578.4164555-UTR-H-canaliculatus_F_contig114:5482..6996Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig114 5483..6996 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928823.136837-CDS-H-canaliculatus_F_contig114:610..22781622928823.136837-CDS-H-canaliculatus_F_contig114:610..2278Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig114 611..2278 +
1696845578.3875256-CDS-H-canaliculatus_F_contig114:610..22781696845578.3875256-CDS-H-canaliculatus_F_contig114:610..2278Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig114 611..2278 +
1622928823.153667-CDS-H-canaliculatus_F_contig114:2672..28521622928823.153667-CDS-H-canaliculatus_F_contig114:2672..2852Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig114 2673..2852 +
1696845578.3985622-CDS-H-canaliculatus_F_contig114:2672..28521696845578.3985622-CDS-H-canaliculatus_F_contig114:2672..2852Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig114 2673..2852 +
1622928823.1774583-CDS-H-canaliculatus_F_contig114:3487..54821622928823.1774583-CDS-H-canaliculatus_F_contig114:3487..5482Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig114 3488..5482 +
1696845578.4076982-CDS-H-canaliculatus_F_contig114:3487..54821696845578.4076982-CDS-H-canaliculatus_F_contig114:3487..5482Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig114 3488..5482 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig114.1235.1

>prot_H-canaliculatus_F_contig114.1235.1 ID=prot_H-canaliculatus_F_contig114.1235.1|Name=mRNA_H-canaliculatus_F_contig114.1235.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=1281bp
MQAAAATAAAAGVGAGDDEGSSTSRQDSPGNIQQEAAASLGGVVGGAAVD
EEGGHEDMETGGWVQGADAHGETKYAAAQAPPAGVGPSSPPTQSGVQDSA
LAQAHDVTRAEQIDREFEAMLGQRSYREKRETMNFLADPNTRPVDPRFPQ
LSAERKRRILQAGRSAKTWDVTPILANDQEGQACILANERERKESRASLG
EEGDEDWRSAPSSEWIELVPCMKRRLRQSSLRRAPRPGPPTTQGTLGSAF
VCFKNAPSAAAEGKNKRPRLETRPGYDGDELTPMLRRLDEQDRGSSVSQS
QSQSDFGRPAADRSPRTPFSGASLSLARPAAGAVSRTPQPRKVARLSTGG
SSVNRRGSIGMPLRYRQRDFTPGRGRASLAGVGVGVGIGERTHGAGTLGD
WLGEAGKQPGPAGGNDRRSSSSSGLSNSDGIEKRGGLSSKRRAEGQDPHP
DGPGPQARGSPAAAGNKRAASSLCLEGMDATPRRKMQAVDAALTDEGKRL
LQKVEAEAKATAEVGSILLSVVSQESKARDVTRQVREGQALSTNKQEERE
RPSRKQVAEERGNGEQKLEQTKALRSKARSETASFTFGTSPLPLPSALTR
PAETHDPSDFVFSTSQAPARFVQQADDARNEDENEDAMSMEDASGSAFAF
GAPSSRHAPLHLHRAEPSFRFSVPTPATRAIHGGERGAGALVLAPGDDGD
DGEDHMAEDAPGHFEFSTKPRKARKTKGGVAAGRSAAGQMSSLDSAPLAV
AEASGSSGSGSGGMRPAAVTSTALAGTSATPVSGAITNGFDMSMFSKPGE
WKCESCLVRNPSGTDKCASCETLKPGASGGSAAASGGIFASAASSSAPTF
TFGVQPGGGAPGGVSAGATATTSTQAVTTTTPFAFGGGASSGAATGASSS
SPSTPAPALGGFDMSKFSKPGEWKCDACLVRNSPADTKCASCETPRSGTS
GGSGAASGGGILAGANSSAGSVFSFGVQPAATVATVSSTTPSATPFTFGA
QSSSTSAAPSAVPTSNAAFTFGAQPLAPVGVDGVGGRVAAAAANGGGVGS
FIGGSSAPSGFTFGAPIGSAAASTASAAPSFGISGAPSASAAAPAMVPSP
GPTSGSLAISITSSTASVPAFGFSLTGASTTTGRSAASVVPVSTSQAPAA
SFGSGGGFGSSQAAPAPVAAAATSFGAPSGNGGTRSVFSFGSGSLPAPTG
SSNTSAGPSDALFNFGSGSLPAPAGSSSGAPGASLFTFGAGTSTGGGGGG
GGASSSSSGVPPGSSPSAPGFSFILPSTRK*
back to top

mRNA from alignment at H-canaliculatus_F_contig114:488..6996+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig114.1235.1 ID=mRNA_H-canaliculatus_F_contig114.1235.1|Name=mRNA_H-canaliculatus_F_contig114.1235.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=6509bp|location=Sequence derived from alignment at H-canaliculatus_F_contig114:488..6996+ (Hapterophycus canaliculatus Oshoro5f female)
TCGGACCAGGACCAGGTGGTTGGAGAAGCCGCCGGCGACCGCTACGGCGA
AGAATGTGACCAAGAGGCCGAAGGACCGCGGGCGGACGAGCAAGTTGAGG
GCGAAGAATCGTCCTTCTCCCCTATGCAAGCGGCCGCCGCGACTGCCGCC
GCCGCAGGTGTTGGCGCGGGAGACGACGAGGGCAGTAGTACAAGTAGACA
AGATTCGCCGGGCAATATACAGCAGGAGGCTGCGGCCAGCCTCGGCGGTG
TGGTGGGTGGAGCCGCAGTAGACGAGGAAGGCGGACACGAGGACATGGAG
ACCGGAGGGTGGGTCCAAGGCGCCGACGCGCACGGTGAGACTAAGTACGC
TGCAGCTCAGGCGCCCCCTGCAGGCGTGGGACCATCGAGCCCCCCGACGC
AGAGTGGCGTGCAGGATTCGGCGTTGGCACAGGCTCATGACGTGACCAGG
GCGGAGCAGATCGACCGGGAGTTCGAGGCCATGCTCGGCCAACGAAGCTA
CCGAGAGAAGCGAGAGACGATGAATTTCCTGGCTGACCCCAACACGCGGC
CGGTAGACCCCCGTTTCCCTCAACTCTCCGCGGAGCGAAAGCGGCGCATT
CTCCAGGCCGGTCGGTCAGCGAAAACCTGGGACGTGACCCCCATCTTGGC
GAACGATCAGGAAGGGCAGGCCTGCATCCTCGCCAACGAGAGAGAGAGGA
AAGAATCCCGGGCTAGTTTGGGCGAGGAGGGTGATGAGGACTGGCGATCG
GCTCCCAGCAGCGAATGGATTGAGTTGGTCCCATGCATGAAGCGGAGGCT
CCGACAATCCAGCCTGCGACGGGCACCCAGGCCCGGACCCCCCACCACCC
AGGGAACGCTTGGCTCTGCGTTCGTGTGCTTCAAGAACGCTCCCTCGGCC
GCCGCCGAAGGCAAGAACAAACGCCCGAGGCTGGAAACAAGACCAGGGTA
CGACGGCGACGAGCTCACCCCGATGTTGCGGCGGCTGGACGAGCAAGACA
GGGGCTCCTCCGTCTCACAATCTCAATCTCAGTCTGACTTTGGCCGTCCG
GCTGCCGACCGCTCTCCGCGCACCCCCTTCTCCGGCGCTAGCTTGTCGCT
TGCGCGGCCTGCAGCCGGTGCCGTCTCCCGCACTCCCCAGCCTCGCAAAG
TGGCGCGCTTGAGCACGGGGGGTTCGTCGGTCAATCGCCGCGGCAGCATC
GGGATGCCCCTTCGCTACAGGCAGCGGGACTTCACCCCGGGGAGGGGGAG
GGCCTCTCTCGCCGGCGTTGGCGTTGGCGTCGGCATCGGAGAGCGGACAC
ATGGCGCCGGAACGCTGGGCGACTGGCTCGGCGAGGCCGGCAAGCAGCCC
GGTCCTGCGGGCGGCAACGACCGGCGCAGCAGCAGCAGCAGCGGCCTCTC
CAACAGCGACGGCATTGAGAAGAGGGGAGGGCTATCTTCGAAGCGCCGGG
CGGAAGGACAGGATCCGCATCCAGATGGTCCAGGACCACAGGCGCGTGGC
AGTCCCGCGGCCGCCGGCAACAAGCGCGCGGCATCTTCTCTGTGTCTAGA
AGGGATGGACGCGACGCCTCGCAGGAAGATGCAGGCGGTGGATGCAGCTC
TCACGGACGAGGGTAAAAGGCTGCTTCAGAAGGTGGAGGCGGAGGCAAAG
GCGACGGCCGAGGTCGGGAGTATCCTCCTGTCGGTGGTTTCGCAGGAGAG
CAAGGCTAGGGATGTCACGCGGCAGGTGCGCGAGGGACAGGCGTTGAGCA
CGAACAAGCAGGAGGAGCGGGAGCGGCCCAGTAGGAAGCAGGTGAGGCGG
CTGGCCTCTGGTGTTGCCGCAGGCTGCAGGCATGCGGGTCTCTTGGGTCG
AAGCGGATCGGATGATTGTGAATTTGTTGTGGATCATTGTCCTTTGTCTT
CCTGCTGCAGTAAGTGAAACATTTGTCACTGGTCTACAGTACTTGTTTCG
CGTGCTGCTGCGTGTCAGCGTTTGGGCAGGTGTAAGGGTCAGATCGCGGC
TTGTAGACCATATGATGTGGTTTTTTACTTCTACTCGCGAATCTGCTGTA
CCAAGCATAGTGAGTGAAAAATACGTTCAAGGTCACGCCATTCCTTCGCT
TCGTGAGCCTCCAATCCAAGTCTCTGCGCTTACAATATTCGCGGTACTAC
TGTACAAAATACCGCTTGAATTGTGTGGGGTTCAGGTGGCGGAAGAGCGA
GGCAATGGTGAGCAGAAGCTAGAGCAGACGAAGGCTTTAAGGTCGAAGGC
GAGGTCGGAGACAGCGTCTTTCACGTTCGGAACGTCACCGTTACCCTTGC
CTTCCGCTCTGACTCGGCCCGCCGAGACTCATGATCCGTCGGATTTCGTC
TTCTCTACATCACAGGTGAGTGTAGAACACCATGGCCCATCTTTTCCCCG
AACTTGCATGGTCGGTATGGACGGTATACCGGTTTGTCGGTAAGGTATTG
CCACGTAAGGTATTGCCCCGAAAGCCTTGTGGCGTTGCTGACTTGCCGGC
TGGCCGAGGCTCATTCGCCCGTGTCCAGCCGGTGAGTTCGGTGTTGGTAT
GCTGGTATGATCAGCCTTGAGTGCAAGTGGGCCATCACGGCGGTTGCTCA
AATCTGCGATTGTTCGGAATTTGAATGGCACCTGGTGGAAATGCACAGCT
CCCAGCCGCTTTCTATTTGACACAGAGAACTAGAAGAGGCTTTGCGGTAA
AGCAGTTTGCTACTAATACCCGCAGTTTTATCCAGCAAGAAGAGGGCAAG
AGGGCGATTTTCGGTCGCGTGATGAGAAGCAGGAGCGGGATTGAAAGCTT
CGCGTCTCTGTTTGTTTCCGTTGCTGTGCTATCATGCCCCATGTGTTACT
TGTTGTGGACGAAGTGTTGGTCGGTGCCCTCTCAAAGCGAACCTCCTCAT
CTCGGGAAGGCAGATCTTCGCCTGAAAGGCTGAAAGGGAGATCTTCCCCT
GACAAATTCTGCAAATGCCCGTTGCCGTTGATGCTCCCCTTGTCCCTTAG
GCACCTGCTCGTTTTGTTCAGCAAGCGGACGACGCCAGGAACGAAGATGA
GAACGAAGACGCCATGAGCATGGAGGACGCTTCAGGCTCCGCCTTCGCCT
TCGGCGCCCCTTCCTCGCGCCACGCTCCCCTGCACTTACACCGAGCAGAG
CCCTCTTTCCGCTTTTCGGTTCCAACCCCCGCCACTCGTGCCATCCACGG
CGGCGAGAGAGGGGCAGGGGCGTTGGTCCTTGCGCCTGGGGACGACGGTG
ACGACGGTGAGGACCACATGGCAGAAGACGCTCCGGGACACTTCGAGTTT
TCGACCAAGCCTAGAAAAGCCCGCAAGACAAAGGGCGGCGTAGCCGCTGG
GAGGAGCGCTGCGGGGCAGATGTCCTCTCTTGACTCTGCCCCCCTCGCGG
TGGCTGAGGCAAGTGGGTCCAGCGGCAGCGGCAGCGGCGGCATGAGGCCG
GCGGCGGTGACCTCGACTGCTTTGGCGGGCACCTCGGCTACTCCTGTCTC
CGGCGCGATCACCAACGGCTTCGACATGTCCATGTTCAGCAAGCCGGGAG
AGTGGAAGTGCGAGTCTTGCCTGGTCAGGAACCCCTCGGGGACGGACAAG
TGTGCTTCTTGCGAAACTCTCAAGCCAGGGGCGAGCGGTGGGTCAGCAGC
GGCCTCCGGAGGGATCTTCGCCAGCGCTGCTTCTTCGTCAGCCCCCACCT
TCACCTTCGGAGTTCAGCCCGGCGGTGGTGCTCCGGGCGGCGTATCTGCA
GGAGCCACTGCGACTACTTCCACGCAAGCCGTCACTACCACTACTCCATT
CGCCTTCGGCGGAGGCGCCAGCAGCGGAGCGGCCACCGGAGCGAGCAGCA
GCAGTCCCTCGACGCCCGCTCCTGCCCTGGGTGGTTTCGACATGTCGAAG
TTCAGCAAGCCTGGAGAGTGGAAGTGCGATGCCTGCCTCGTGAGGAACAG
CCCAGCCGACACAAAATGCGCCTCGTGCGAGACTCCGAGATCGGGAACAA
GCGGTGGATCGGGGGCGGCTTCGGGCGGCGGTATCCTGGCCGGCGCAAAC
TCTTCGGCTGGATCCGTCTTTTCGTTCGGAGTGCAGCCGGCGGCAACGGT
TGCTACGGTAAGCAGTACCACTCCCAGCGCAACCCCGTTCACCTTTGGCG
CCCAATCTTCATCGACTTCGGCGGCCCCTTCGGCGGTCCCCACAAGCAAT
GCTGCCTTCACCTTTGGTGCACAGCCTCTTGCGCCTGTAGGTGTTGATGG
CGTCGGTGGCAGGGTTGCGGCCGCGGCTGCGAACGGAGGTGGAGTGGGGT
CCTTCATCGGCGGGTCCTCTGCGCCTTCTGGCTTTACGTTCGGCGCCCCC
ATCGGCAGCGCTGCTGCTAGCACGGCCTCGGCCGCACCCTCTTTCGGCAT
CTCGGGTGCTCCTTCCGCCTCCGCAGCTGCCCCCGCGATGGTCCCGTCGC
CAGGCCCAACGTCGGGGTCGCTAGCAATCAGCATCACCTCTTCAACCGCC
AGTGTCCCGGCCTTCGGCTTTAGCCTGACCGGCGCGAGCACCACCACCGG
CAGATCGGCGGCTTCTGTGGTTCCGGTGTCGACCTCTCAGGCCCCAGCTG
CCAGCTTTGGCAGCGGGGGCGGCTTCGGTTCCTCTCAAGCCGCACCTGCT
CCAGTAGCGGCCGCCGCCACGTCTTTCGGGGCGCCGTCTGGCAACGGGGG
TACCCGCTCCGTGTTTAGCTTCGGTTCGGGATCACTACCGGCTCCCACCG
GATCAAGCAACACCAGCGCTGGGCCTTCGGACGCGCTATTCAACTTCGGT
AGCGGGTCCTTGCCCGCTCCTGCGGGTAGTAGTAGCGGTGCTCCTGGAGC
ATCACTGTTCACCTTCGGCGCTGGGACGTCAACGGGAGGTGGTGGTGGTG
GTGGCGGTGCCTCGTCTTCATCGTCGGGGGTGCCGCCTGGGTCTTCCCCT
TCTGCGCCGGGCTTCAGCTTTATACTGCCCTCGACGCGGAAGTAGGGCGG
CCAAGATTGCTGGAGCCCTTGTAACAGTAGACGGATTGCTCACTTGGAGA
GGTGACAGTTGCCGATAGGCGGTAGAAGGGCAGGCAAGTCCTTCAACAAC
GACGGGAAGGCTTCGGGAATGCATGTGGAAGGCAGTCAGTTCTCGGAATC
GAACTCTGGAGGACGAAGCTGCTGGCCAGGTGACCGTATTTCGACTATTT
CGACTTTTGGCTGGTTGCGTGAGGCGCTGAGTGTTCGCGAATGCGACCTC
TGGCATCAGACTATGGCCGCATGAAGTAAGCTTCTCGAGATCGGAGGTAT
CGAAAAGACCCTCTAGCAATGACGTGTGTGGTGCATTGTGCTGATGTTGA
CAACGTACGAGCGGGTGTGAGCAAGCAAGTGACGGGGGTCACGCAAATAA
ATGTGGTGTGCAGCACCTGATTTGATGAGAGTTATTTTTTGCTTTGCCCC
CGGGGAGAGGTGAAAGGGGAGGAAGGTACTGACCTCTCATCATGCATTTG
GGGAGACGGGTGGAGAAGTATTTGCTCGTCGATTTTTACTTTTGTGGCCC
ACGGGTTGACGGAGCCGATCAATCTAATAAGAGCTTACACGATTGATTGC
ACCTTTTGGCCGAACATCTGCTAAAAACGAAGCTGCGCCCAAAGGCTACA
TATTCACATGTGGCACACCGCTTGTCGTCTCGGGTGTAGGTTGATGTCGT
GGGATTCTGTGCTTTGATCTCCTTGCCCTTGGTGTTGAAAGAGCTTGCTT
GCCATTTTGATGCCGTTGCCCTAGGTATGAAGGAGCTTGCTTGCCACTCT
TCGGTTTCTTAGCTCCCATGCCGGTGTGAGGAGTTGTCTATGCTTGTGTA
CGGTGGAGGCAACAAATTCGACGCTGCTGACCATGAGGGATGGTGGTTTG
CGAAGACCGGACACCGACACTAACAACGCGCTCGAGCCTGCGGAAGAGTA
TCACATGATACCTCTCCAAACGGTTTGGCCCCTGTTGGAAGAAGCTGCAG
TGCGAGTGGAAGGTTTTGTCGGCATGCGCGAGGTTTCGTCACGCCCGTGT
GGTGTTTGTTTTTGTTGGACAAAACAACAGAATGGCGGGGGAAGAGATCT
CGGTACAGCAAGTTGTGTACGCCGACAAAGTGGAACATAACTGATGAGTT
GATGAGGTGATAAACTGCTGCTGCTTGTGTGTTCAAGGTTTGATCTCGAG
CAAGCCCAAGAGTGGACTACAAGCCCAAACCCGGGCGCAAGGCCTCTTGA
ACTTGCAGGTTTTTACTCAGGGAGACAGGACGTCCCGGCAGCTGTTCGTC
GGTCACTCGAATCGAAACATGAAACAACATGTAGGTACGATCACATGAAG
AACGGATAGGGACCTACAGGTGCCATTTTGTGCCTGTCCCATCGGCTTCT
GTTTTCTTCTTTTCCCGCTGACTTGTTAAACCTCGTCCATCTTTAGCGCG
TCTGTGAAAGCCTCGGGCTCAGCTCGGACAGCCTATGCGATGACCATGTC
GTGAGCCTT
back to top

Coding sequence (CDS) from alignment at H-canaliculatus_F_contig114:488..6996+

>mRNA_H-canaliculatus_F_contig114.1235.1 ID=mRNA_H-canaliculatus_F_contig114.1235.1|Name=mRNA_H-canaliculatus_F_contig114.1235.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=7686bp|location=Sequence derived from alignment at H-canaliculatus_F_contig114:488..6996+ (Hapterophycus canaliculatus Oshoro5f female)
ATGCAAGCGGCCGCCGCGACTGCCGCCGCCGCAGGTGTTGGCGCGGGAGA
CGACGAGGGCAGTAGTACAAGTAGACAAGATTCGCCGGGCAATATACAGC
AGGAGGCTGCGGCCAGCCTCGGCGGTGTGGTGGGTGGAGCCGCAGTAGAC
GAGGAAGGCGGACACGAGGACATGGAGACCGGAGGGTGGGTCCAAGGCGC
CGACGCGCACGGTGAGACTAAGTACGCTGCAGCTCAGGCGCCCCCTGCAG
GCGTGGGACCATCGAGCCCCCCGACGCAGAGTGGCGTGCAGGATTCGGCG
TTGGCACAGGCTCATGACGTGACCAGGGCGGAGCAGATCGACCGGGAGTT
CGAGGCCATGCTCGGCCAACGAAGCTACCGAGAGAAGCGAGAGACGATGA
ATTTCCTGGCTGACCCCAACACGCGGCCGGTAGACCCCCGTTTCCCTCAA
CTCTCCGCGGAGCGAAAGCGGCGCATTCTCCAGGCCGGTCGGTCAGCGAA
AACCTGGGACGTGACCCCCATCTTGGCGAACGATCAGGAAGGGCAGGCCT
GCATCCTCGCCAACGAGAGAGAGAGGAAAGAATCCCGGGCTAGTTTGGGC
GAGGAGGGTGATGAGGACTGGCGATCGGCTCCCAGCAGCGAATGGATTGA
GTTGGTCCCATGCATGAAGCGGAGGCTCCGACAATCCAGCCTGCGACGGG
CACCCAGGCCCGGACCCCCCACCACCCAGGGAACGCTTGGCTCTGCGTTC
GTGTGCTTCAAGAACGCTCCCTCGGCCGCCGCCGAAGGCAAGAACAAACG
CCCGAGGCTGGAAACAAGACCAGGGTACGACGGCGACGAGCTCACCCCGA
TGTTGCGGCGGCTGGACGAGCAAGACAGGGGCTCCTCCGTCTCACAATCT
CAATCTCAGTCTGACTTTGGCCGTCCGGCTGCCGACCGCTCTCCGCGCAC
CCCCTTCTCCGGCGCTAGCTTGTCGCTTGCGCGGCCTGCAGCCGGTGCCG
TCTCCCGCACTCCCCAGCCTCGCAAAGTGGCGCGCTTGAGCACGGGGGGT
TCGTCGGTCAATCGCCGCGGCAGCATCGGGATGCCCCTTCGCTACAGGCA
GCGGGACTTCACCCCGGGGAGGGGGAGGGCCTCTCTCGCCGGCGTTGGCG
TTGGCGTCGGCATCGGAGAGCGGACACATGGCGCCGGAACGCTGGGCGAC
TGGCTCGGCGAGGCCGGCAAGCAGCCCGGTCCTGCGGGCGGCAACGACCG
GCGCAGCAGCAGCAGCAGCGGCCTCTCCAACAGCGACGGCATTGAGAAGA
GGGGAGGGCTATCTTCGAAGCGCCGGGCGGAAGGACAGGATCCGCATCCA
GATGGTCCAGGACCACAGGCGCGTGGCAGTCCCGCGGCCGCCGGCAACAA
GCGCGCGGCATCTTCTCTGTGTCTAGAAGGGATGGACGCGACGCCTCGCA
GGAAGATGCAGGCGGTGGATGCAGCTCTCACGGACGAGGGTAAAAGGCTG
CTTCAGAAGGTGGAGGCGGAGGCAAAGGCGACGGCCGAGGTCGGGAGTAT
CCTCCTGTCGGTGGTTTCGCAGGAGAGCAAGGCTAGGGATGTCACGCGGC
AGGTGCGCGAGGGACAGGCGTTGAGCACGAACAAGCAGGAGGAGCGGGAG
CGGCCCAGTAGGAAGCAGATGCAAGCGGCCGCCGCGACTGCCGCCGCCGC
AGGTGTTGGCGCGGGAGACGACGAGGGCAGTAGTACAAGTAGACAAGATT
CGCCGGGCAATATACAGCAGGAGGCTGCGGCCAGCCTCGGCGGTGTGGTG
GGTGGAGCCGCAGTAGACGAGGAAGGCGGACACGAGGACATGGAGACCGG
AGGGTGGGTCCAAGGCGCCGACGCGCACGGTGAGACTAAGTACGCTGCAG
CTCAGGCGCCCCCTGCAGGCGTGGGACCATCGAGCCCCCCGACGCAGAGT
GGCGTGCAGGATTCGGCGTTGGCACAGGCTCATGACGTGACCAGGGCGGA
GCAGATCGACCGGGAGTTCGAGGCCATGCTCGGCCAACGAAGCTACCGAG
AGAAGCGAGAGACGATGAATTTCCTGGCTGACCCCAACACGCGGCCGGTA
GACCCCCGTTTCCCTCAACTCTCCGCGGAGCGAAAGCGGCGCATTCTCCA
GGCCGGTCGGTCAGCGAAAACCTGGGACGTGACCCCCATCTTGGCGAACG
ATCAGGAAGGGCAGGCCTGCATCCTCGCCAACGAGAGAGAGAGGAAAGAA
TCCCGGGCTAGTTTGGGCGAGGAGGGTGATGAGGACTGGCGATCGGCTCC
CAGCAGCGAATGGATTGAGTTGGTCCCATGCATGAAGCGGAGGCTCCGAC
AATCCAGCCTGCGACGGGCACCCAGGCCCGGACCCCCCACCACCCAGGGA
ACGCTTGGCTCTGCGTTCGTGTGCTTCAAGAACGCTCCCTCGGCCGCCGC
CGAAGGCAAGAACAAACGCCCGAGGCTGGAAACAAGACCAGGGTACGACG
GCGACGAGCTCACCCCGATGTTGCGGCGGCTGGACGAGCAAGACAGGGGC
TCCTCCGTCTCACAATCTCAATCTCAGTCTGACTTTGGCCGTCCGGCTGC
CGACCGCTCTCCGCGCACCCCCTTCTCCGGCGCTAGCTTGTCGCTTGCGC
GGCCTGCAGCCGGTGCCGTCTCCCGCACTCCCCAGCCTCGCAAAGTGGCG
CGCTTGAGCACGGGGGGTTCGTCGGTCAATCGCCGCGGCAGCATCGGGAT
GCCCCTTCGCTACAGGCAGCGGGACTTCACCCCGGGGAGGGGGAGGGCCT
CTCTCGCCGGCGTTGGCGTTGGCGTCGGCATCGGAGAGCGGACACATGGC
GCCGGAACGCTGGGCGACTGGCTCGGCGAGGCCGGCAAGCAGCCCGGTCC
TGCGGGCGGCAACGACCGGCGCAGCAGCAGCAGCAGCGGCCTCTCCAACA
GCGACGGCATTGAGAAGAGGGGAGGGCTATCTTCGAAGCGCCGGGCGGAA
GGACAGGATCCGCATCCAGATGGTCCAGGACCACAGGCGCGTGGCAGTCC
CGCGGCCGCCGGCAACAAGCGCGCGGCATCTTCTCTGTGTCTAGAAGGGA
TGGACGCGACGCCTCGCAGGAAGATGCAGGCGGTGGATGCAGCTCTCACG
GACGAGGGTAAAAGGCTGCTTCAGAAGGTGGAGGCGGAGGCAAAGGCGAC
GGCCGAGGTCGGGAGTATCCTCCTGTCGGTGGTTTCGCAGGAGAGCAAGG
CTAGGGATGTCACGCGGCAGGTGCGCGAGGGACAGGCGTTGAGCACGAAC
AAGCAGGAGGAGCGGGAGCGGCCCAGTAGGAAGCAGGTGGCGGAAGAGCG
AGGCAATGGTGAGCAGAAGCTAGAGCAGACGAAGGCTTTAAGGTCGAAGG
CGAGGTCGGAGACAGCGTCTTTCACGTTCGGAACGTCACCGTTACCCTTG
CCTTCCGCTCTGACTCGGCCCGCCGAGACTCATGATCCGTCGGATTTCGT
CTTCTCTACATCACAGGTGGCGGAAGAGCGAGGCAATGGTGAGCAGAAGC
TAGAGCAGACGAAGGCTTTAAGGTCGAAGGCGAGGTCGGAGACAGCGTCT
TTCACGTTCGGAACGTCACCGTTACCCTTGCCTTCCGCTCTGACTCGGCC
CGCCGAGACTCATGATCCGTCGGATTTCGTCTTCTCTACATCACAGGCAC
CTGCTCGTTTTGTTCAGCAAGCGGACGACGCCAGGAACGAAGATGAGAAC
GAAGACGCCATGAGCATGGAGGACGCTTCAGGCTCCGCCTTCGCCTTCGG
CGCCCCTTCCTCGCGCCACGCTCCCCTGCACTTACACCGAGCAGAGCCCT
CTTTCCGCTTTTCGGTTCCAACCCCCGCCACTCGTGCCATCCACGGCGGC
GAGAGAGGGGCAGGGGCGTTGGTCCTTGCGCCTGGGGACGACGGTGACGA
CGGTGAGGACCACATGGCAGAAGACGCTCCGGGACACTTCGAGTTTTCGA
CCAAGCCTAGAAAAGCCCGCAAGACAAAGGGCGGCGTAGCCGCTGGGAGG
AGCGCTGCGGGGCAGATGTCCTCTCTTGACTCTGCCCCCCTCGCGGTGGC
TGAGGCAAGTGGGTCCAGCGGCAGCGGCAGCGGCGGCATGAGGCCGGCGG
CGGTGACCTCGACTGCTTTGGCGGGCACCTCGGCTACTCCTGTCTCCGGC
GCGATCACCAACGGCTTCGACATGTCCATGTTCAGCAAGCCGGGAGAGTG
GAAGTGCGAGTCTTGCCTGGTCAGGAACCCCTCGGGGACGGACAAGTGTG
CTTCTTGCGAAACTCTCAAGCCAGGGGCGAGCGGTGGGTCAGCAGCGGCC
TCCGGAGGGATCTTCGCCAGCGCTGCTTCTTCGTCAGCCCCCACCTTCAC
CTTCGGAGTTCAGCCCGGCGGTGGTGCTCCGGGCGGCGTATCTGCAGGAG
CCACTGCGACTACTTCCACGCAAGCCGTCACTACCACTACTCCATTCGCC
TTCGGCGGAGGCGCCAGCAGCGGAGCGGCCACCGGAGCGAGCAGCAGCAG
TCCCTCGACGCCCGCTCCTGCCCTGGGTGGTTTCGACATGTCGAAGTTCA
GCAAGCCTGGAGAGTGGAAGTGCGATGCCTGCCTCGTGAGGAACAGCCCA
GCCGACACAAAATGCGCCTCGTGCGAGACTCCGAGATCGGGAACAAGCGG
TGGATCGGGGGCGGCTTCGGGCGGCGGTATCCTGGCCGGCGCAAACTCTT
CGGCTGGATCCGTCTTTTCGTTCGGAGTGCAGCCGGCGGCAACGGTTGCT
ACGGTAAGCAGTACCACTCCCAGCGCAACCCCGTTCACCTTTGGCGCCCA
ATCTTCATCGACTTCGGCGGCCCCTTCGGCGGTCCCCACAAGCAATGCTG
CCTTCACCTTTGGTGCACAGCCTCTTGCGCCTGTAGGTGTTGATGGCGTC
GGTGGCAGGGTTGCGGCCGCGGCTGCGAACGGAGGTGGAGTGGGGTCCTT
CATCGGCGGGTCCTCTGCGCCTTCTGGCTTTACGTTCGGCGCCCCCATCG
GCAGCGCTGCTGCTAGCACGGCCTCGGCCGCACCCTCTTTCGGCATCTCG
GGTGCTCCTTCCGCCTCCGCAGCTGCCCCCGCGATGGTCCCGTCGCCAGG
CCCAACGTCGGGGTCGCTAGCAATCAGCATCACCTCTTCAACCGCCAGTG
TCCCGGCCTTCGGCTTTAGCCTGACCGGCGCGAGCACCACCACCGGCAGA
TCGGCGGCTTCTGTGGTTCCGGTGTCGACCTCTCAGGCCCCAGCTGCCAG
CTTTGGCAGCGGGGGCGGCTTCGGTTCCTCTCAAGCCGCACCTGCTCCAG
TAGCGGCCGCCGCCACGTCTTTCGGGGCGCCGTCTGGCAACGGGGGTACC
CGCTCCGTGTTTAGCTTCGGTTCGGGATCACTACCGGCTCCCACCGGATC
AAGCAACACCAGCGCTGGGCCTTCGGACGCGCTATTCAACTTCGGTAGCG
GGTCCTTGCCCGCTCCTGCGGGTAGTAGTAGCGGTGCTCCTGGAGCATCA
CTGTTCACCTTCGGCGCTGGGACGTCAACGGGAGGTGGTGGTGGTGGTGG
CGGTGCCTCGTCTTCATCGTCGGGGGTGCCGCCTGGGTCTTCCCCTTCTG
CGCCGGGCTTCAGCTTTATACTGCCCTCGACGCGGAAGTAGGCACCTGCT
CGTTTTGTTCAGCAAGCGGACGACGCCAGGAACGAAGATGAGAACGAAGA
CGCCATGAGCATGGAGGACGCTTCAGGCTCCGCCTTCGCCTTCGGCGCCC
CTTCCTCGCGCCACGCTCCCCTGCACTTACACCGAGCAGAGCCCTCTTTC
CGCTTTTCGGTTCCAACCCCCGCCACTCGTGCCATCCACGGCGGCGAGAG
AGGGGCAGGGGCGTTGGTCCTTGCGCCTGGGGACGACGGTGACGACGGTG
AGGACCACATGGCAGAAGACGCTCCGGGACACTTCGAGTTTTCGACCAAG
CCTAGAAAAGCCCGCAAGACAAAGGGCGGCGTAGCCGCTGGGAGGAGCGC
TGCGGGGCAGATGTCCTCTCTTGACTCTGCCCCCCTCGCGGTGGCTGAGG
CAAGTGGGTCCAGCGGCAGCGGCAGCGGCGGCATGAGGCCGGCGGCGGTG
ACCTCGACTGCTTTGGCGGGCACCTCGGCTACTCCTGTCTCCGGCGCGAT
CACCAACGGCTTCGACATGTCCATGTTCAGCAAGCCGGGAGAGTGGAAGT
GCGAGTCTTGCCTGGTCAGGAACCCCTCGGGGACGGACAAGTGTGCTTCT
TGCGAAACTCTCAAGCCAGGGGCGAGCGGTGGGTCAGCAGCGGCCTCCGG
AGGGATCTTCGCCAGCGCTGCTTCTTCGTCAGCCCCCACCTTCACCTTCG
GAGTTCAGCCCGGCGGTGGTGCTCCGGGCGGCGTATCTGCAGGAGCCACT
GCGACTACTTCCACGCAAGCCGTCACTACCACTACTCCATTCGCCTTCGG
CGGAGGCGCCAGCAGCGGAGCGGCCACCGGAGCGAGCAGCAGCAGTCCCT
CGACGCCCGCTCCTGCCCTGGGTGGTTTCGACATGTCGAAGTTCAGCAAG
CCTGGAGAGTGGAAGTGCGATGCCTGCCTCGTGAGGAACAGCCCAGCCGA
CACAAAATGCGCCTCGTGCGAGACTCCGAGATCGGGAACAAGCGGTGGAT
CGGGGGCGGCTTCGGGCGGCGGTATCCTGGCCGGCGCAAACTCTTCGGCT
GGATCCGTCTTTTCGTTCGGAGTGCAGCCGGCGGCAACGGTTGCTACGGT
AAGCAGTACCACTCCCAGCGCAACCCCGTTCACCTTTGGCGCCCAATCTT
CATCGACTTCGGCGGCCCCTTCGGCGGTCCCCACAAGCAATGCTGCCTTC
ACCTTTGGTGCACAGCCTCTTGCGCCTGTAGGTGTTGATGGCGTCGGTGG
CAGGGTTGCGGCCGCGGCTGCGAACGGAGGTGGAGTGGGGTCCTTCATCG
GCGGGTCCTCTGCGCCTTCTGGCTTTACGTTCGGCGCCCCCATCGGCAGC
GCTGCTGCTAGCACGGCCTCGGCCGCACCCTCTTTCGGCATCTCGGGTGC
TCCTTCCGCCTCCGCAGCTGCCCCCGCGATGGTCCCGTCGCCAGGCCCAA
CGTCGGGGTCGCTAGCAATCAGCATCACCTCTTCAACCGCCAGTGTCCCG
GCCTTCGGCTTTAGCCTGACCGGCGCGAGCACCACCACCGGCAGATCGGC
GGCTTCTGTGGTTCCGGTGTCGACCTCTCAGGCCCCAGCTGCCAGCTTTG
GCAGCGGGGGCGGCTTCGGTTCCTCTCAAGCCGCACCTGCTCCAGTAGCG
GCCGCCGCCACGTCTTTCGGGGCGCCGTCTGGCAACGGGGGTACCCGCTC
CGTGTTTAGCTTCGGTTCGGGATCACTACCGGCTCCCACCGGATCAAGCA
ACACCAGCGCTGGGCCTTCGGACGCGCTATTCAACTTCGGTAGCGGGTCC
TTGCCCGCTCCTGCGGGTAGTAGTAGCGGTGCTCCTGGAGCATCACTGTT
CACCTTCGGCGCTGGGACGTCAACGGGAGGTGGTGGTGGTGGTGGCGGTG
CCTCGTCTTCATCGTCGGGGGTGCCGCCTGGGTCTTCCCCTTCTGCGCCG
GGCTTCAGCTTTATACTGCCCTCGACGCGGAAGTAG
back to top