mRNA_H-canaliculatus_F_contig11391.1232.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig11391.1232.1
Unique NamemRNA_H-canaliculatus_F_contig11391.1232.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig11391.1232.1 vs. uniprot
Match: D7FSN3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSN3_ECTSI)

HSP 1 Score: 219 bits (559), Expect = 3.810e-66
Identity = 111/135 (82.22%), Postives = 118/135 (87.41%), Query Frame = 1 
Query:    7 MSKLTASQNREQLIYKPRALAALNCFLVAVFLSKGAYQISSVMGLWHLPDIPLKGSEDVSPLNFCVFMFWDYLPTVWLLLVMEGTTGDRVSTSVAKAVFPSRDSDFDDDLRHLPDYGLFREIKAAAAREAARAER 411
            MS+LTASQNR QLIY PRAL ALNCFLVAVFLSKGAYQISSV GLW LPDIPLKGSEDV  LNFCVFM WDY+PTVWLLLVMEGTTGD V TSV KAV P+    + DDLR+LPDYG+FREIKAAAAR+AARAER
Sbjct:  190 MSRLTASQNRAQLIYHPRALTALNCFLVAVFLSKGAYQISSVKGLWCLPDIPLKGSEDVCLLNFCVFMLWDYIPTVWLLLVMEGTTGDHVGTSVVKAVHPAN---YGDDLRNLPDYGVFREIKAAAARDAARAER 321
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BLAST of mRNA_H-canaliculatus_F_contig11391.1232.1 vs. uniprot
Match: A0A6H5J7K4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J7K4_9PHAE)

HSP 1 Score: 213 bits (543), Expect = 1.050e-60
Identity = 108/135 (80.00%), Postives = 117/135 (86.67%), Query Frame = 1 
Query:    7 MSKLTASQNREQLIYKPRALAALNCFLVAVFLSKGAYQISSVMGLWHLPDIPLKGSEDVSPLNFCVFMFWDYLPTVWLLLVMEGTTGDRVSTSVAKAVFPSRDSDFDDDLRHLPDYGLFREIKAAAAREAARAER 411
            MS+LTASQNR QLIY PRAL ALNCFLVAVFLSKGAYQISSV GLW LPDIPLKGSED+  LNF VFM WDY+PTVWLLLVMEGTTG+ V TSV KAV P+    + DDLR+LPDYG+FREIKAAAAR+AARAER
Sbjct:  135 MSRLTASQNRAQLIYHPRALTALNCFLVAVFLSKGAYQISSVKGLWCLPDIPLKGSEDICLLNFSVFMLWDYVPTVWLLLVMEGTTGEHVGTSVVKAVHPAN---YGDDLRNLPDYGVFREIKAAAARDAARAER 266
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BLAST of mRNA_H-canaliculatus_F_contig11391.1232.1 vs. uniprot
Match: A0A835ZDS8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZDS8_9STRA)

HSP 1 Score: 124 bits (311), Expect = 9.350e-29
Identity = 71/152 (46.71%), Postives = 90/152 (59.21%), Query Frame = 1 
Query:    1 LQMSKLTASQNREQLIYKPRALAALNCFLVAVFLSKGAYQISSVMGLWHLPDIPLKGSEDVSPLNFCVFMFWDYLPTVWLLLVMEGTTGDR-------------------VSTSVAKAVFPSRDSDFDDDLRHLPDYGLFREIKAAAAREAA 399
            +QM++L  SQ+R  LIY+PRALA LN  L +VFLSKG YQ+ S + +W+LP+IPL+G ED+SPLNF VF +WDYLPTV LLLV+                          ++TS AK +            + LPDYGLFREIK  A R  A
Sbjct:  183 IQMARLQESQHRRFLIYEPRALAILNSVLFSVFLSKGIYQLCSTLNIWYLPNIPLQGDEDISPLNFIVFCWWDYLPTVLLLLVVTNRXXXXXXXXXXXXXXXXXXXARSLLATSHAKRL-----------PQALPDYGLFREIKIEAMRTGA 323
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig11391.1232.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FSN3_ECTSI3.810e-6682.22Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5J7K4_9PHAE1.050e-6080.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835ZDS8_9STRA9.350e-2946.71Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig11391contigH-canaliculatus_F_contig11391:560..3535 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score222.2
Seed ortholog evalue1.7e-55
Seed eggNOG ortholog2880.D7FSN3
EggNOG OGs2BYFE@1,2S2HC@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-07_002510.1
Exons4
Model size834
Cds size480
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig11391.1232.1prot_H-canaliculatus_F_contig11391.1232.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig11391 566..3187 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928822.7352242-UTR-H-canaliculatus_F_contig11391:559..5651622928822.7352242-UTR-H-canaliculatus_F_contig11391:559..565Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig11391 560..565 +
1696845578.2415063-UTR-H-canaliculatus_F_contig11391:559..5651696845578.2415063-UTR-H-canaliculatus_F_contig11391:559..565Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig11391 560..565 +
1622928822.8158274-UTR-H-canaliculatus_F_contig11391:3187..35351622928822.8158274-UTR-H-canaliculatus_F_contig11391:3187..3535Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig11391 3188..3535 +
1696845578.2902782-UTR-H-canaliculatus_F_contig11391:3187..35351696845578.2902782-UTR-H-canaliculatus_F_contig11391:3187..3535Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig11391 3188..3535 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928822.7498412-CDS-H-canaliculatus_F_contig11391:565..6671622928822.7498412-CDS-H-canaliculatus_F_contig11391:565..667Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11391 566..667 +
1696845578.2520306-CDS-H-canaliculatus_F_contig11391:565..6671696845578.2520306-CDS-H-canaliculatus_F_contig11391:565..667Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11391 566..667 +
1622928822.7655563-CDS-H-canaliculatus_F_contig11391:1246..13061622928822.7655563-CDS-H-canaliculatus_F_contig11391:1246..1306Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11391 1247..1306 +
1696845578.2605608-CDS-H-canaliculatus_F_contig11391:1246..13061696845578.2605608-CDS-H-canaliculatus_F_contig11391:1246..1306Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11391 1247..1306 +
1622928822.7765558-CDS-H-canaliculatus_F_contig11391:1751..18771622928822.7765558-CDS-H-canaliculatus_F_contig11391:1751..1877Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11391 1752..1877 +
1696845578.2702005-CDS-H-canaliculatus_F_contig11391:1751..18771696845578.2702005-CDS-H-canaliculatus_F_contig11391:1751..1877Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11391 1752..1877 +
1622928822.8007529-CDS-H-canaliculatus_F_contig11391:2995..31871622928822.8007529-CDS-H-canaliculatus_F_contig11391:2995..3187Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11391 2996..3187 +
1696845578.2799742-CDS-H-canaliculatus_F_contig11391:2995..31871696845578.2799742-CDS-H-canaliculatus_F_contig11391:2995..3187Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11391 2996..3187 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig11391.1232.1

>prot_H-canaliculatus_F_contig11391.1232.1 ID=prot_H-canaliculatus_F_contig11391.1232.1|Name=mRNA_H-canaliculatus_F_contig11391.1232.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=160bp
MSKLTASQNREQLIYKPRALAALNCFLVAVFLSKGAYQISSVMGLWHLPD
IPLKGSEDVSPLNFCVFMFWDYLPTVWLLLVMEGTTGDRVSTSVAKAVFP
SRDSDFDDDLRHLPDYGLFREIKAAAAREAARAERCLVLAAHGHLLRALR
IYFYGGGGG*
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mRNA from alignment at H-canaliculatus_F_contig11391:560..3535+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig11391.1232.1 ID=mRNA_H-canaliculatus_F_contig11391.1232.1|Name=mRNA_H-canaliculatus_F_contig11391.1232.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=2976bp|location=Sequence derived from alignment at H-canaliculatus_F_contig11391:560..3535+ (Hapterophycus canaliculatus Oshoro5f female)
CTGCAGATGTCGAAGCTGACGGCGTCGCAGAACAGGGAGCAGCTGATCTA
CAAGCCCCGCGCGTTGGCCGCTCTCAACTGCTTCCTGGTCGCGGTCTTCC
TTTCCAAGGTATCCACGAGCGTGGCCGCCTGCTCGGCCACCTGCCTGCCC
GCCTGCCTGTGATTGTGGACCCACGGACAAGCTTGTTGGCTGGACCGTGT
AGCAGCCGGTGTTGTGGTAGAGGTGAATCACCACCTGTTCCATTAACTTA
TTGTGGGAAGGGGGGGGGGGGGGGAGAGAGTCCCTAGGTGGAAGGGTAAA
GTGCTTCGTGGAGACCCGTCGTCGCTCCTCGCAAAGTGGCCTTCGTTCAT
GTGTGCGATATTCTAGCGCGCGACGTCTTCGCCGTGGTCTGCCCCCCGCT
GCTGGTTGACTCACGGCCGCCTTTCTTGCGTCTTACTTTTGTCGACGATT
CTGCCCGGCGGCTGCGGTCTCCTGCTGCTGCTGCTGACGCCGCCGACGCT
GCTGCTGCTGCTGCTGCTGCTGTTGTTGGTGCCCCGACGCCTTGGTGGCA
TCCGGTGCTCCTGCTTCTACTTCTGCTTCCTGCCTCCGCCGGCGGCGGCG
ATCTTGATTTTCGGCCGTGCTCCCGGGCGTGCCGGTGTCTCTCACCTGCT
GGCGTCCTCGCTGCCGCCTGCGGGCGCCTGCCGACAGGGGGCTTACCAGA
TCTCCTCCGTCATGGGGCTGTGGCACCTGCCGGACATACCGCTCAAGGTG
AGGGCGCCGGAGCCCACACACGTGCCGCTGCAGGGGGCAAACGGCGTGGG
CGGGCGCCGAAAGTTGGGGCATTGACGCATGCCTTTTTTTCGTCCGTCGC
GTGCGGCGTTCGGGGGCGTGAGACGCACAGCACAACAACGATTCTCCTCG
TACGCACGCACTCGTATTTTTTATTTTGTTTTTTTTGCGGCCGTCGTGTG
CGTGCTTTCGTCGCGCCTTCTTTTCTTCTTTTTTCTTTTCTTCTTTTTTC
TTTTTTTCTTCTTTTTTTTCGATGCGCTTTCTGTGCGAGAGAACTGTTTT
CAAGGCCGTCCGTTGTTGACATTTTTTTTTTTTTTTGTGGCCACGCTTTG
CCTCAAAAGCCCGCCCGCCCGCTCCCGCGTTGTCTTGCGTTGCTCGTGCG
CATGGTGTGTGCTCGCGTGTCCGCGCTCGGAACGCCCCGCAGGGGTCGGA
GGACGTGTCTCCGCTGAACTTCTGCGTGTTCATGTTCTGGGACTACCTGC
CGACGGTGTGGCTACTGCTGGTCATGGAGGGCACGACCGGGGACCGCGTG
AGCACTTCGGTCGCCAAGGTGTGCTCCGTGTACGCATGTCGATGTTGCCC
CCCTACACCCCCCCCCCTCCACGCCCGTTGTCCGCCTTGTTACTTTTGTC
GCCATCGTCGACCTCTATGCTGCTGCTGCTGCTGCTAGCTGCTGTTATTA
CCGTCCCTCCCGGCGATCCTCTTCGTTTCCGCGAGAGAGCGAGTCCCCCC
AGTTAGCCGGGGCACACCGCCGCGGCTCCGTCGGGCCAGGATGCATCTCT
TTGTGCCGGTGCCGGCCAAAAGCTTGAGTGCTGCTTGGTTCTGCCCGAAA
ACGTCGGTCTCCCGCCCCCTCGCGAGCGCGACTCGTGGATCGAACGAGAG
AGCTGGTTAGAGCTTGGTGATCAGGCCGCCCACGATCGTTAGCTTCTTGC
CTGTGGGAATCACCCGGAAAGTCGCTTACTTTCTTTCTCGTCTCCGGTCC
GAAGCTACCGATCTACCTACCTACCTGCCTGCGTACCCACCTATCCACGA
CCCGCTGCTGACCGAGCGTTGGGCGCAAATTGCGTTCCGAGCGCCGTACA
AGAACCGGCCCGTGCGACGCGATACGCGCCGGGCGGAGCAGCGGAGGGAG
GGGCGGGGGTGGTTTGAAGGACGCGATCCGCAACTGGCGGATAACGGTCA
GAGGCTGGCGGCGAGGTTTTTTTTCTGGTGGACCTTCACCCAGACCGCTT
CCAGACAGAAGCGCCTTTTCACCTTCTCGGTCTCATTTTGCGCCTCTTTC
GCCTTTCCCCCCTCCCTCCCTTTCTCGCCTTTCTTCGCGGCCTGCCCCGG
CCTGGCCTAGCGGGCCTGAACGACGCGCGCCCCTCGCGGACGTGACCGAA
ATCTACGCTCGACCTGCAGGCTGCAGGGGAAGCCTCATCAACGGCACGCC
TCCCCCGTTTCCCCCAAGCTCCTTCCCTAAACAACTGATGCTATCTTGTC
ACCCCTTTTTCCTTCCTTCTTTTCCTCCTACTTTTCTGCAGGTCTCCACC
TACACGTACCCGTTTCTGGGCGTGTTCGCGTCTTCGCGTACGTCCAGACA
ATGAATGAATGAATGATTGCACATCCGCGTGCATACCCGCTCGTGCCCGC
GTCTGCCGTGGCCCCGTCTGTGAACTCCCAACGCAGGCGGTTTTTCCCTC
TCGAGATTCCGATTTCGACGACGACCTGCGACACCTCCCGGACTACGGCC
TGTTTCGCGAGATCAAGGCGGCCGCCGCCAGGGAGGCTGCGAGAGCCGAA
AGGTGCTTGGTGCTGGCGGCGCACGGGCATTTACTCCGCGCGCTTCGAAT
TTACTTTTACGGGGGGGGGGGAGGCTAGTTCGCGCGTGGATCACGCGAGT
CTGTGCCTATCATGGTGCATCTTTTCGTTGTCATCATCATCGTCGCTGTT
GTTTTATGTCGGCAGTGCGTGCGTACTCTTCTCTCCGCCCGCCGGACAGC
AACAGAGCAACAGCTACTCGCAGCAGCTGCCGTTTATCACGCCGGCGGCC
CGCCGGTTCCTCCCGTGGTCGCCGCTTCCTCCAAACCTCCCTGTTTGCTC
TGCTCACCCCCGTCCCCCCACTCGCCTCCTCCTCCTCCTCCGCTTCGAGT
GGCTCGTTCCTCGAAGGAAGCGCGCATGCCCGGTGTGTAGTAACACCAGT
AACACTGGCACACGGGGCTCGCTCGT
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig11391:560..3535+

>mRNA_H-canaliculatus_F_contig11391.1232.1 ID=mRNA_H-canaliculatus_F_contig11391.1232.1|Name=mRNA_H-canaliculatus_F_contig11391.1232.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=960bp|location=Sequence derived from alignment at H-canaliculatus_F_contig11391:560..3535+ (Hapterophycus canaliculatus Oshoro5f female)
ATGTCGAAGCTGACGGCGTCGCAGAACAGGGAGCAGCTGATCTACAAGCC
CCGCGCGTTGGCCGCTCTCAACTGCTTCCTGGTCGCGGTCTTCCTTTCCA
AGATGTCGAAGCTGACGGCGTCGCAGAACAGGGAGCAGCTGATCTACAAG
CCCCGCGCGTTGGCCGCTCTCAACTGCTTCCTGGTCGCGGTCTTCCTTTC
CAAGGGGGCTTACCAGATCTCCTCCGTCATGGGGCTGTGGCACCTGCCGG
ACATACCGCTCAAGGGGGCTTACCAGATCTCCTCCGTCATGGGGCTGTGG
CACCTGCCGGACATACCGCTCAAGGGGTCGGAGGACGTGTCTCCGCTGAA
CTTCTGCGTGTTCATGTTCTGGGACTACCTGCCGACGGTGTGGCTACTGC
TGGTCATGGAGGGCACGACCGGGGACCGCGTGAGCACTTCGGTCGCCAAG
GGGTCGGAGGACGTGTCTCCGCTGAACTTCTGCGTGTTCATGTTCTGGGA
CTACCTGCCGACGGTGTGGCTACTGCTGGTCATGGAGGGCACGACCGGGG
ACCGCGTGAGCACTTCGGTCGCCAAGGCGGTTTTTCCCTCTCGAGATTCC
GATTTCGACGACGACCTGCGACACCTCCCGGACTACGGCCTGTTTCGCGA
GATCAAGGCGGCCGCCGCCAGGGAGGCTGCGAGAGCCGAAAGGTGCTTGG
TGCTGGCGGCGCACGGGCATTTACTCCGCGCGCTTCGAATTTACTTTTAC
GGGGGGGGGGGAGGCTAGGCGGTTTTTCCCTCTCGAGATTCCGATTTCGA
CGACGACCTGCGACACCTCCCGGACTACGGCCTGTTTCGCGAGATCAAGG
CGGCCGCCGCCAGGGAGGCTGCGAGAGCCGAAAGGTGCTTGGTGCTGGCG
GCGCACGGGCATTTACTCCGCGCGCTTCGAATTTACTTTTACGGGGGGGG
GGGAGGCTAG
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