mRNA_H-canaliculatus_F_contig11375.1225.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig11375.1225.1
Unique NamemRNA_H-canaliculatus_F_contig11375.1225.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig11375.1225.1 vs. uniprot
Match: A0A6H5JH84_9PHAE (Mre11_DNA_bind domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JH84_9PHAE)

HSP 1 Score: 200 bits (508), Expect = 1.170e-57
Identity = 94/97 (96.91%), Postives = 97/97 (100.00%), Query Frame = 1 
Query:   16 RFGHVNYEDPYFSVGLPIFSIHGNHDDPTREGGVEALAALDLLHVANLVNYFGKSDKVDDVEVNPILIQKGLTKLALYGLGSMRDERLNRMWQQKKV 306
            RFGHVNYEDPYFSVGLPIFSIHGNHDDPTREGGVEALAALDLLHVANLVNYFGKS+KVDDVEVNPILIQKGLTK+ALYG+GSMRDERLNRMWQQKKV
Sbjct:   62 RFGHVNYEDPYFSVGLPIFSIHGNHDDPTREGGVEALAALDLLHVANLVNYFGKSNKVDDVEVNPILIQKGLTKVALYGMGSMRDERLNRMWQQKKV 158
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BLAST of mRNA_H-canaliculatus_F_contig11375.1225.1 vs. uniprot
Match: A0A7S3ZYR3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S3ZYR3_9STRA)

HSP 1 Score: 161 bits (407), Expect = 1.930e-44
Identity = 73/93 (78.49%), Postives = 86/93 (92.47%), Query Frame = 1 
Query:   28 VNYEDPYFSVGLPIFSIHGNHDDPTREGGVEALAALDLLHVANLVNYFGKSDKVDDVEVNPILIQKGLTKLALYGLGSMRDERLNRMWQQKKV 306
            VNYEDP+ SVGLPIFSIHGNHDDPTREGGVEALAALDLL VAN++NYFG+ +  D VEV+P+L++KG T++ALYGLG+MRDERLNRMWQQK+V
Sbjct:  170 VNYEDPHVSVGLPIFSIHGNHDDPTREGGVEALAALDLLSVANMLNYFGRQEHADRVEVSPVLLRKGNTRVALYGLGNMRDERLNRMWQQKRV 262
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BLAST of mRNA_H-canaliculatus_F_contig11375.1225.1 vs. uniprot
Match: A0A8J2X2L8_9STRA (Double-strand break repair protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2X2L8_9STRA)

HSP 1 Score: 161 bits (407), Expect = 3.340e-44
Identity = 73/93 (78.49%), Postives = 86/93 (92.47%), Query Frame = 1 
Query:   28 VNYEDPYFSVGLPIFSIHGNHDDPTREGGVEALAALDLLHVANLVNYFGKSDKVDDVEVNPILIQKGLTKLALYGLGSMRDERLNRMWQQKKV 306
            VNYEDP+ SVGLPIFSIHGNHDDPTREGGVEALAALDLL VAN++NYFG+ +  D VEV+P+L++KG T++ALYGLG+MRDERLNRMWQQK+V
Sbjct:  103 VNYEDPHVSVGLPIFSIHGNHDDPTREGGVEALAALDLLSVANMLNYFGRQEHADRVEVSPVLLRKGNTRVALYGLGNMRDERLNRMWQQKRV 195
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BLAST of mRNA_H-canaliculatus_F_contig11375.1225.1 vs. uniprot
Match: A0A7S2UFV9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2UFV9_9STRA)

HSP 1 Score: 160 bits (406), Expect = 6.150e-44
Identity = 75/95 (78.95%), Postives = 85/95 (89.47%), Query Frame = 1 
Query:   22 GHVNYEDPYFSVGLPIFSIHGNHDDPTREGGVEALAALDLLHVANLVNYFGKSDKVDDVEVNPILIQKGLTKLALYGLGSMRDERLNRMWQQKKV 306
            G VNYED Y+SV LPIFSIHGNHDDPTR+GG E LAALDLL V+NLVNYFG+ D+VD VEV+PILI+KG T++ALYG+GSMRDERLNRMWQ KKV
Sbjct:  171 GTVNYEDSYYSVDLPIFSIHGNHDDPTRDGGTEMLAALDLLSVSNLVNYFGRHDEVDKVEVSPILIRKGSTRVALYGMGSMRDERLNRMWQGKKV 265
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BLAST of mRNA_H-canaliculatus_F_contig11375.1225.1 vs. uniprot
Match: B8C3H0_THAPS (Mre11_DNA_bind domain-containing protein (Fragment) n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8C3H0_THAPS)

HSP 1 Score: 157 bits (397), Expect = 9.250e-44
Identity = 69/95 (72.63%), Postives = 85/95 (89.47%), Query Frame = 1 
Query:   22 GHVNYEDPYFSVGLPIFSIHGNHDDPTREGGVEALAALDLLHVANLVNYFGKSDKVDDVEVNPILIQKGLTKLALYGLGSMRDERLNRMWQQKKV 306
            G  NYED Y+SV +PIF+IHGNHDDPTR+GG E L+ALDLL V+NL+NYFG+ D+VD+V+V+P+L+QKG TK+ALYG+GSMRDERLNRMWQ KKV
Sbjct:   99 GRANYEDEYYSVDMPIFAIHGNHDDPTRDGGTELLSALDLLSVSNLINYFGRQDQVDNVQVSPVLLQKGGTKVALYGMGSMRDERLNRMWQGKKV 193
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BLAST of mRNA_H-canaliculatus_F_contig11375.1225.1 vs. uniprot
Match: A0A7S1Z5E1_9STRA (Hypothetical protein (Fragment) n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S1Z5E1_9STRA)

HSP 1 Score: 156 bits (394), Expect = 4.300e-43
Identity = 71/102 (69.61%), Postives = 86/102 (84.31%), Query Frame = 1 
Query:    1 SFRFCRFGHVNYEDPYFSVGLPIFSIHGNHDDPTREGGVEALAALDLLHVANLVNYFGKSDKVDDVEVNPILIQKGLTKLALYGLGSMRDERLNRMWQQKKV 306
            +F+    G VNYED ++SV LPIF+IHGNHDDPTR+GG E LAALDLL ++N VNYFG+ D+VD VEV+PIL++KG T +ALYG+GSMRDERLNRMWQ KKV
Sbjct:   29 NFKRSLHGRVNYEDEFYSVDLPIFAIHGNHDDPTRDGGTEMLAALDLLSISNFVNYFGRQDEVDKVEVSPILLRKGSTNVALYGMGSMRDERLNRMWQGKKV 130
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BLAST of mRNA_H-canaliculatus_F_contig11375.1225.1 vs. uniprot
Match: A0A7R9ZGZ5_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9ZGZ5_9STRA)

HSP 1 Score: 145 bits (365), Expect = 6.380e-43
Identity = 66/87 (75.86%), Postives = 78/87 (89.66%), Query Frame = 1 
Query:   46 YFSVGLPIFSIHGNHDDPTREGGVEALAALDLLHVANLVNYFGKSDKVDDVEVNPILIQKGLTKLALYGLGSMRDERLNRMWQQKKV 306
            ++S+ LPIFSIHGNHDDPTR+GG E LAALDLL V+NLVNYFG+ D+VD VEV P+LI+KG TK+A+YG+GSMRDERLNRMWQ KKV
Sbjct:    1 HYSIDLPIFSIHGNHDDPTRDGGTEMLAALDLLAVSNLVNYFGRQDEVDKVEVAPVLIRKGSTKVAVYGMGSMRDERLNRMWQGKKV 87
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BLAST of mRNA_H-canaliculatus_F_contig11375.1225.1 vs. uniprot
Match: A0A7S1ZX37_TRICV (Hypothetical protein (Fragment) n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S1ZX37_TRICV)

HSP 1 Score: 147 bits (370), Expect = 3.270e-42
Identity = 70/101 (69.31%), Postives = 83/101 (82.18%), Query Frame = 1 
Query:    4 FRFCRFGHVNYEDPYFSVGLPIFSIHGNHDDPTREGGVEALAALDLLHVANLVNYFGKSDKVDDVEVNPILIQKGLTKLALYGLGSMRDERLNRMWQQKKV 306
            FR    G VNYED  +SV LPIFSIH NHD+PT +GG E LAALDLL V NLVNYFG+ D+VD VEV+P+L++KG T++ALYG+GSMRDERLNRMW+ KKV
Sbjct:   99 FRSSVSGTVNYEDENYSVDLPIFSIHANHDNPTSDGGTEMLAALDLLAVTNLVNYFGRQDEVDRVEVSPVLMRKGDTRVALYGMGSMRDERLNRMWRGKKV 199
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BLAST of mRNA_H-canaliculatus_F_contig11375.1225.1 vs. uniprot
Match: W7UA87_9STRA (Meiotic recombination 11 n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7UA87_9STRA)

HSP 1 Score: 152 bits (383), Expect = 7.680e-42
Identity = 68/96 (70.83%), Postives = 82/96 (85.42%), Query Frame = 1 
Query:   19 FGHVNYEDPYFSVGLPIFSIHGNHDDPTREGGVEALAALDLLHVANLVNYFGKSDKVDDVEVNPILIQKGLTKLALYGLGSMRDERLNRMWQQKKV 306
            F HVNYEDP ++VGLP+FSIHGNHDDPTR+G  E L+A+DLL + NLVNYFGK+   D VEV P+L+QKG T +ALYGLG+MRDERLNRMWQ+KK+
Sbjct:  111 FSHVNYEDPNYAVGLPVFSIHGNHDDPTRDGPSEPLSAMDLLGMTNLVNYFGKASATDAVEVAPLLLQKGRTCMALYGLGNMRDERLNRMWQKKKI 206
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BLAST of mRNA_H-canaliculatus_F_contig11375.1225.1 vs. uniprot
Match: A0A7S4MXX5_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4MXX5_9STRA)

HSP 1 Score: 155 bits (392), Expect = 1.170e-41
Identity = 71/93 (76.34%), Postives = 82/93 (88.17%), Query Frame = 1 
Query:   28 VNYEDPYFSVGLPIFSIHGNHDDPTREGGVEALAALDLLHVANLVNYFGKSDKVDDVEVNPILIQKGLTKLALYGLGSMRDERLNRMWQQKKV 306
            VNYED ++S+ LPIFSIHGNHDDPTR+GG E LAALDLL V NLVNYFG+ D+VD VEV P+LI+KG TK+A+YG+GSMRDERLNRMWQ KKV
Sbjct:  130 VNYEDEHYSIDLPIFSIHGNHDDPTRDGGTEMLAALDLLAVTNLVNYFGRQDEVDKVEVAPVLIKKGSTKVAIYGMGSMRDERLNRMWQGKKV 222
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig11375.1225.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JH84_9PHAE1.170e-5796.91Mre11_DNA_bind domain-containing protein n=2 Tax=E... [more]
A0A7S3ZYR3_9STRA1.930e-4478.49Hypothetical protein (Fragment) n=1 Tax=Pelagomona... [more]
A0A8J2X2L8_9STRA3.340e-4478.49Double-strand break repair protein n=1 Tax=Pelagom... [more]
A0A7S2UFV9_9STRA6.150e-4478.95Hypothetical protein (Fragment) n=1 Tax=Attheya se... [more]
B8C3H0_THAPS9.250e-4472.63Mre11_DNA_bind domain-containing protein (Fragment... [more]
A0A7S1Z5E1_9STRA4.300e-4369.61Hypothetical protein (Fragment) n=1 Tax=Ditylum br... [more]
A0A7R9ZGZ5_9STRA6.380e-4375.86Hypothetical protein (Fragment) n=1 Tax=Pseudictyo... [more]
A0A7S1ZX37_TRICV3.270e-4269.31Hypothetical protein (Fragment) n=1 Tax=Trieres ch... [more]
W7UA87_9STRA7.680e-4270.83Meiotic recombination 11 n=1 Tax=Nannochloropsis g... [more]
A0A7S4MXX5_9STRA1.170e-4176.34Hypothetical protein n=1 Tax=Odontella aurita TaxI... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig11375contigH-canaliculatus_F_contig11375:2585..3634 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score201.4
Seed ortholog evalue2.2e-49
Seed eggNOG ortholog2880.D7FN26
Preferred nameMRE11
KEGG koko:K10865
KEGG Pathwayko03440,ko03450,ko04218,map03440,map03450,map04218
KEGG ModuleM00291,M00292,M00295
GOsGO:0000228,GO:0000785,GO:0000791,GO:0000793,GO:0000794,GO:0000795,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005694,GO:0031974,GO:0031981,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044454,GO:0044464,GO:0070013,GO:0099086
EggNOG free text desc.manganese ion binding
EggNOG OGsCOG0420@1,KOG2310@2759
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03032,ko03400
Hectar predicted targeting categoryother localisation
Exons2
Model size339
Cds size339
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928821.6539953-CDS-H-canaliculatus_F_contig11375:2584..27371622928821.6539953-CDS-H-canaliculatus_F_contig11375:2584..2737Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11375 2585..2737 -
1696845577.714331-CDS-H-canaliculatus_F_contig11375:2584..27371696845577.714331-CDS-H-canaliculatus_F_contig11375:2584..2737Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11375 2585..2737 -
1622928821.6665108-CDS-H-canaliculatus_F_contig11375:3448..36341622928821.6665108-CDS-H-canaliculatus_F_contig11375:3448..3634Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11375 3449..3634 -
1696845577.7287085-CDS-H-canaliculatus_F_contig11375:3448..36341696845577.7287085-CDS-H-canaliculatus_F_contig11375:3448..3634Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11375 3449..3634 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig11375.1225.1prot_H-canaliculatus_F_contig11375.1225.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig11375 2585..3634 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig11375.1225.1

>prot_H-canaliculatus_F_contig11375.1225.1 ID=prot_H-canaliculatus_F_contig11375.1225.1|Name=mRNA_H-canaliculatus_F_contig11375.1225.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=113bp
SFRFCRFGHVNYEDPYFSVGLPIFSIHGNHDDPTREGGVEALAALDLLHV
ANLVNYFGKSDKVDDVEVNPILIQKGLTKLALYGLGSMRDERLNRMWQQK
KVGRPARGGGGG*
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mRNA from alignment at H-canaliculatus_F_contig11375:2585..3634-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig11375.1225.1 ID=mRNA_H-canaliculatus_F_contig11375.1225.1|Name=mRNA_H-canaliculatus_F_contig11375.1225.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=1050bp|location=Sequence derived from alignment at H-canaliculatus_F_contig11375:2585..3634- (Hapterophycus canaliculatus Oshoro5f female)
TCTTTTCGTTTTTGCAGATTTGGGCACGTAAACTACGAAGACCCTTACTT
TTCTGTGGGGCTGCCGATCTTCAGCATACACGGCAACCACGATGACCCCA
CCCGGGAGGGCGGCGTGGAGGCCCTCGCGGCTCTGGACCTGCTGCACGTG
GCCAACCTCGTCAACTACTTCGGCAAGAGCGACAAGGTGAAGGCGGCGCT
TTTTTGGTGCTGGTGTTGGTTTTCGTTCAGGGAAAAAAGAGGCGATGACA
CCAGAGGAATACCCTCCTCGGAGACCAAGTATAGGGACTCAGGGAGGTTT
TGTTGAATTCGTTGCAGTGAGGGTTCAGTTTGTTGGACGGGACGCTGCGC
TGTTTTTGTTGGCGGCGGTGGTGGTGGTGGTGGTGGTGGTGGTGGTGGTA
GTGGGGGTGGTTGATGACATTTTTTTCGTTTTTCACCGGCGCGGGTGTAG
CGTTGGTGCTGGGCTCAGTCGCGGTGGTGGTGATGTGGCGGCGGCGGATC
GTGTATTTTGTCGTCGTGGTGGGTGATTCTTGGCGACGGAATCTCGCATC
TTACACGTCCCTTAACGCACGAATAAAAGGTACCTGCTAAATCGATGATA
CAAAGATACGATGATGCACAAAAGCCACGACGCTTGAAACAAAAGGCGCT
CGAAGTACGGTTCTACATGAAGGTGTTGTTAGTTGCATAAAAACCAAATT
CCCCCCTTTTTCATGTTCATGCTTTTGTCCCAACGTTACACGTCAATGAA
CCCTCATTGTTTGGAACTCAACAGAAGCCTCGAGCTACGCCTCGCACGAC
GTACCTCAGGAGGTTTTCCTTTGGTGTTGTTTTATTGTTATTTTTGAAAG
GCACGTAGGTCCCTAAACCCCCACGGCGCACGGTAAACGCCGCCCAGGTC
GACGACGTGGAGGTGAACCCGATCCTCATCCAGAAGGGCTTGACGAAGCT
AGCCCTCTATGGTTTGGGCAGCATGAGAGACGAGAGGCTCAACCGCATGT
GGCAGCAAAAGAAGGTAGGGCGACCTGCCAGGGGAGGTGGGGGGGGGTAG
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig11375:2585..3634-

>mRNA_H-canaliculatus_F_contig11375.1225.1 ID=mRNA_H-canaliculatus_F_contig11375.1225.1|Name=mRNA_H-canaliculatus_F_contig11375.1225.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=678bp|location=Sequence derived from alignment at H-canaliculatus_F_contig11375:2585..3634- (Hapterophycus canaliculatus Oshoro5f female)
TCTTTTCGTTTTTGCAGATTTGGGCACGTAAACTACGAAGACCCTTACTT
TTCTGTGGGGCTGCCGATCTTCAGCATACACGGCAACCACGATGACCCCA
CCCGGGAGGGCGGCGTGGAGGCCCTCGCGGCTCTGGACCTGCTGCACGTG
GCCAACCTCGTCAACTACTTCGGCAAGAGCGACAAGTCTTTTCGTTTTTG
CAGATTTGGGCACGTAAACTACGAAGACCCTTACTTTTCTGTGGGGCTGC
CGATCTTCAGCATACACGGCAACCACGATGACCCCACCCGGGAGGGCGGC
GTGGAGGCCCTCGCGGCTCTGGACCTGCTGCACGTGGCCAACCTCGTCAA
CTACTTCGGCAAGAGCGACAAGGTCGACGACGTGGAGGTGAACCCGATCC
TCATCCAGAAGGGCTTGACGAAGCTAGCCCTCTATGGTTTGGGCAGCATG
AGAGACGAGAGGCTCAACCGCATGTGGCAGCAAAAGAAGGTAGGGCGACC
TGCCAGGGGAGGTGGGGGGGGGTAGGTCGACGACGTGGAGGTGAACCCGA
TCCTCATCCAGAAGGGCTTGACGAAGCTAGCCCTCTATGGTTTGGGCAGC
ATGAGAGACGAGAGGCTCAACCGCATGTGGCAGCAAAAGAAGGTAGGGCG
ACCTGCCAGGGGAGGTGGGGGGGGGTAG
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