mRNA_H-canaliculatus_F_contig1137.1220.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig1137.1220.1
Unique NamemRNA_H-canaliculatus_F_contig1137.1220.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
[Close]
BLAST of mRNA_H-canaliculatus_F_contig1137.1220.1 vs. uniprot
Match: A0A6H5JC43_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JC43_9PHAE)

HSP 1 Score: 135 bits (339), Expect = 1.470e-30
Identity = 71/176 (40.34%), Postives = 96/176 (54.55%), Query Frame = 3 
Query:   78 TCTNGIPGIDGSNDEGIVCCPVECGQCGSQECHQAGLAVGLDNTHCCVTGVLVTQDLCTLSGEAPCIIESSAEESSYVANVVMGPEVPDMTPYPETTGEAEQKVETCTNGIPGIQGSNADGIVCCPVECGQCGTSNCHQAGLAVGLDNTHCCVTGVLVTTDLCSVSDEAPCIIESS 605
            TC+NG+ GID +   G+VCCP+ CGQCG   C+ +G A GLD + CC  GV  + + C  + EAPCII S    S   AN                         TC+NG+ GI G+   G+VCCP+ CGQCG + C+ +G A GLD + CC   +  +   C  +++APCII SS
Sbjct:  192 TCSNGLEGIDAN---GVVCCPLACGQCGGTGCNTSGAAFGLDGSSCCGGGVKASDEYCDETNEAPCIIGSRPTPSPTSAN-------------------------TCSNGLEGIDGN---GVVCCPLGCGQCGGTGCNTSGAAAGLDGSSCCGGSIKASGKYCDETNDAPCIIGSS 336
[Close]
BLAST of mRNA_H-canaliculatus_F_contig1137.1220.1 vs. uniprot
Match: A0A6H5JZG5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZG5_9PHAE)

HSP 1 Score: 130 bits (328), Expect = 7.540e-29
Identity = 76/187 (40.64%), Postives = 103/187 (55.08%), Query Frame = 3 
Query:   75 ETCTNGIPGIDGSNDEGIVCCPVECGQCGSQECHQAGLAVGLDNTHCCVTGVLVTQDLCTLSGEAPCIIESSAEESSYVANVVMGPEVPDMTPYPETTGEAE-----------QKVETCTNGIPGIQGSNADGIVCCPVECGQCGTSNCHQAGLAVGLDNTHCCVTGVLVTTDLCSVSDEAPCIIES 602
            ETC+NG+ GIDGS   G VCC ++CGQCG + C+ +G A GL    CC  G+  + + C  + EAPCII S        A ++  P +  +  Y   T +             Q VETC+NG+ GI GS   G VCCP++CGQCG   C+ +G A GL    CC  G+  + + C  ++EAPCII S
Sbjct:  239 ETCSNGLEGIDGS---GGVCCSLDCGQCGGKGCYTSGSANGLGGDFCCSGGIKASDEYCDETNEAPCIIGSRPG-----AKMIHVPSLHVI--YDRVTHKQACLANVYLFFLGQSVETCSNGLEGIDGS---GGVCCPLDCGQCGGKGCYTSGSANGLGGDFCCSGGIKASDEYCDETNEAPCIIGS 412
[Close]
BLAST of mRNA_H-canaliculatus_F_contig1137.1220.1 vs. uniprot
Match: A0A6H5JGP9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGP9_9PHAE)

HSP 1 Score: 120 bits (301), Expect = 1.410e-27
Identity = 70/171 (40.94%), Postives = 87/171 (50.88%), Query Frame = 3 
Query:   81 CTNGIPGIDGSNDEGIVCCPVECGQCGSQECHQAGLAVGLDNTHCCVTGVLVTQDLCTLSGEAPCIIESSAEESSYVANVVMGPEVPDMTPYPETTGEAEQKVETCTNGIPGIQGSNADGIVCCPVECGQCGTSNCHQAGLAVGLDNTHCCVTGVLVTTDLCSVSDEAPCI 593
            C +GI GIDG+   G+VCCP+ECGQC    C   G   GL +  CC  GV    + C ++GEAPCI  S  E                        GE       C+ GI GI G+   G+VCCP+ECGQCG + C  AG A GL +  CC +GV  +   C V+ EAPCI
Sbjct:   48 CNDGIEGIDGN---GVVCCPLECGQCAGTGCTNFGADFGLGSESCCGGGVKDAGNYCDVTGEAPCIYGSPPE------------------------GE-------CSGGIEGIDGN---GVVCCPLECGQCGGTGCSSAGAASGLGSESCCESGVDSSGRYCDVTGEAPCI 181
[Close]
BLAST of mRNA_H-canaliculatus_F_contig1137.1220.1 vs. uniprot
Match: D7FQV4_ECTSI (Unsaturated glucuronyl hydrolase, family GH88 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQV4_ECTSI)

HSP 1 Score: 128 bits (322), Expect = 1.980e-27
Identity = 70/177 (39.55%), Postives = 93/177 (52.54%), Query Frame = 3 
Query:   75 ETCTNGIPGIDGSNDEGIVCCPVECGQCGSQECHQAGLAVGLDNTHCCVTGVLVTQDLCTLSGEAPCIIESSAEESSYVANVVMGPEVPDMTPYPETTGEAEQKVETCTNGIPGIQGSNADGIVCCPVECGQCGTSNCHQAGLAVGLDNTHCCVTGVLVTTDLCSVSDEAPCIIESS 605
            ETC+NG+ GI+G+   G+VCCP+EC QCG   C  +G A GL +  CC  G+  +   C  + EAPCII                             G     VETC+NG+ GI G+   G+VCCP+EC QCG + C  +G A GL +  CC  G+  +   C  ++EAPCII SS
Sbjct:  470 ETCSNGLEGIEGN---GVVCCPLECNQCGGTGCTMSGSAAGLGSESCCGGGIKASGAYCDDTNEAPCII-----------------------------GSRPTTVETCSNGLEGIDGN---GVVCCPLECNQCGGTGCTTSGSAAGLGSESCCGGGIKASGAYCDDTNEAPCIIGSS 611
[Close]
BLAST of mRNA_H-canaliculatus_F_contig1137.1220.1 vs. uniprot
Match: D7G8L8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8L8_ECTSI)

HSP 1 Score: 119 bits (298), Expect = 8.330e-27
Identity = 69/184 (37.50%), Postives = 92/184 (50.00%), Query Frame = 3 
Query:   66 EIEETCTNGIPGIDGSNDEGIVCCPVECGQCGSQECHQAGLAVGLDNTHCCVTGVLVTQDLCTLSGEAPCIIESSAEESSYVANVVMGPEVPDMTPYPETTGEAEQKVETCTNGIPGIQGSNADGIVCCPVECGQCGTSNCHQAGLAVGLDNTHCCVTGVLVTTDLCSVSDEAPCIIESSVKES 617
            + + TC +GI GIDG+   G+VCCP  CGQCG + C  +G   GL +  CC  GV    + C ++G+APCI  S  E                        GE       C NGI GI G+   G+VCCP++CGQCG   C  +G   GL +  CC  GV    + C V+ +APCI  S  +E+
Sbjct:   19 QAQSTCNDGIEGIDGN---GVVCCPRHCGQCGGEGCTGSGADFGLGSESCCGGGVKSANNYCDVTGKAPCIYGSPPE------------------------GE-------CNNGIEGIDGN---GVVCCPLDCGQCGGEGCSGSGADFGLGSESCCGGGVKSANNYCDVTGKAPCIYGSPPEEA 165
[Close]
BLAST of mRNA_H-canaliculatus_F_contig1137.1220.1 vs. uniprot
Match: A0A6H5JJ37_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJ37_9PHAE)

HSP 1 Score: 127 bits (319), Expect = 1.410e-26
Identity = 96/303 (31.68%), Postives = 130/303 (42.90%), Query Frame = 3 
Query:   81 CTNGIPGIDGSNDEGIVCCPVECGQCGSQECHQAGLA-VGLDNTHCCVTGVLVTQDLCTLSGEAPCIIESSAEESSYVANVVMGPEVPDMTPYPETTGEAEQKV----------------ETCTNGIPGIQGSNADGIVCCPVECGQCGTSNCHQAGLAVGLDNTHCCVTGVLVTTDLCSVSDEAPCIIESSVKESYYEENASDTEIGPEVPYIEGATFLGCFED--KRGERTMEIGYINMIDMTNQECVEFCKMEGHTYAGTENDYSCWCGDDEET-IDRHGESTSCGKPCGGDISQVCGGL 929
            C+ GI GI+ S  +G VCCP+ C QCG + C   GL   G ++  CC + VL     C++S EAPC+++ +       A                                         + C+NGIPGIQ     GI CC  ECG+CG   C + G  +G DN  CC   +    +LCSV+  APCI++                 G    Y  G   L C     K+    +  G I+  DMT + C E C  +G  Y  T+    CWC  D     DRHG++  C  PC GD S+ CGG+
Sbjct:  612 CSTGIRGIESS--DGAVCCPLGCTQCGGEGCSTVGLPEYGAES--CCQSDVLSAGVSCSVSEEAPCVLDETPTPEPNAAPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSGDVCSNGIPGIQ----SGITCCLAECGECGGPGCAEFGGGLGQDN--CCQGRIEEYGELCSVTLAAPCIVD-----------------GEGCLYFAG---LACLPHLAKQPLHHVRSGLISS-DMTAELCYETCSAKGAAYMATQWGVECWCSRDGSLDYDRHGDTGVCDYPCIGDESETCGGV 883
[Close]
BLAST of mRNA_H-canaliculatus_F_contig1137.1220.1 vs. uniprot
Match: A0A6H5JUS5_9PHAE (MEP12 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUS5_9PHAE)

HSP 1 Score: 120 bits (300), Expect = 1.690e-24
Identity = 70/181 (38.67%), Postives = 93/181 (51.38%), Query Frame = 3 
Query:   54 GEAEEIEETCTNGIPGIDGSNDEGIVCCPVECGQCGSQECHQAGLAVGLDNTHCCVTGVLVTQDLCTLSGEAPCIIESSAEESSYVANVVMGPEVPDMTPYPETTGEAEQKVETCTNGIPGIQGSNADGIVCCPVECGQCGTSNCHQAGLAVGLDNTHCCVTGVLVTTDLCSVSDEAPCII 596
            G+ E  ++T  +G  GIDG+   G+VCCP+ CGQCG   C  AG A GL +  CC  GV      C  + EAPCII S+ +     + +               + E+    +TC+NGI GI   +  G VCCP+ CGQCG + C  AG A  LD   CC + VL     C  ++ APCII
Sbjct:  564 GDIESADDTQIDGTEGIDGN---GVVCCPIGCGQCGGDGCSTAGSANGLGSESCCGGGVKSLGVYCDDTNEAPCIIGSAPDTDDVDSGI---------------SEESADDTQTCSNGIEGI---DHKGEVCCPLACGQCGGTGCGSAGSAFELDGESCCSSQVLAGNVYCEDTNAAPCII 723
[Close]
BLAST of mRNA_H-canaliculatus_F_contig1137.1220.1 vs. uniprot
Match: D7G651_ECTSI (Mannuronan C-5-epimerase C-terminal n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G651_ECTSI)

HSP 1 Score: 118 bits (295), Expect = 7.360e-24
Identity = 68/176 (38.64%), Postives = 89/176 (50.57%), Query Frame = 3 
Query:   75 ETCTNGIPGIDGSNDEGIVCCPVECGQCGSQECHQAGLAVGLDNTHCCVTGVLVTQDLCTLSGEAPCIIESSAEESSYVANVVMGPEVPDMTPYPETTGEAEQKVETCTNGIPGIQGSNADGIVCCPVECGQCGTSNCHQAGLAVGLDNTHCCVTGVLVTTDLCSVSDEAPCIIES 602
            +TC++G  GIDG+   G+VCCP+ CGQC    C  AG A GL +  CC  GV      C  + EAPCII S  +                     +   E+  + +TC++G  GI G+   G+VCCP+ CGQC    C  AG A GL +  CC  GV      C  ++EAPCII S
Sbjct:  419 QTCSDGTEGIDGN---GVVCCPIGCGQCAGDGCGTAGSANGLGSESCCGNGVKSLGLYCDDTNEAPCIIGSRPDTD-------------------DVDSESADETQTCSDGTEGIDGN---GVVCCPIGCGQCAGDGCGTAGSANGLGSESCCGNGVKSLGLYCDDTNEAPCIIGS 569
[Close]
BLAST of mRNA_H-canaliculatus_F_contig1137.1220.1 vs. uniprot
Match: D7FJ68_ECTSI (WSC domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJ68_ECTSI)

HSP 1 Score: 116 bits (291), Expect = 5.060e-23
Identity = 68/188 (36.17%), Postives = 96/188 (51.06%), Query Frame = 3 
Query:   69 IEETCTNGIPGIDGSNDEGIVCCPVECGQCGSQECHQAGLAVGLDNTHCCVTGVLVTQDLCTLSGEAPCIIESSAEESSYVANVVMGPEVPDMTPYPETTGEAEQK---------VETCTNGIPGIQGSNADGIVCCPVECGQCGTSNCHQAGLAVGLDNTHCCVTGVLVTTDLCSVSDEAPCIIESS 605
            I+ETC+NGIPGI   N     CC  ECG CG  +C + G  +G DN  CCV+ ++   +LC+++  APC I+ S+   S VA                                  + C+NGIPGIQ     G+ CC  ECG+CG S+C + G  +G DN  CC + +    +LCS+  EAPC+++ S
Sbjct: 1053 IDETCSNGIPGIQTGN----ACCLAECGACGGSDCDEFGGGLGADN--CCVSDIVEHGELCSIALAAPCYIDDSSPAPSPVAEPTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTDVCSNGIPGIQ----SGVSCCLAECGECGGSDCAEYGDGLGADN--CCQSNIEEYGELCSIKLEAPCVVDDS 1228
[Close]
BLAST of mRNA_H-canaliculatus_F_contig1137.1220.1 vs. uniprot
Match: A0A6H5L8H5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L8H5_9PHAE)

HSP 1 Score: 115 bits (287), Expect = 7.690e-23
Identity = 66/176 (37.50%), Postives = 90/176 (51.14%), Query Frame = 3 
Query:   78 TCTNGIPGIDGSNDEGIVCCPVECGQCGSQECHQAGLAVGLDNTHCCVTGVLVTQDLCTLSGEAPCIIESSAEESSYVANVVMGPEVPDMTPYPETTGEAEQKVETCTNGIPGIQGSNADGIVCCPVECGQCGTSNCHQAGLAVGLDNTHCCVTGVLVTTDLCSVSDEAPCIIESS 605
            TC++GI GIDG+   G+VCCP+ CGQC    C  AG A GL ++ CC  G+  + + C  +G APCI  S+ +                              V TC +GI GI G+   G+VCCP+ CGQC  S C  AG A GL ++ CC  G+  + + C  +  APCI  S+
Sbjct:  534 TCSDGIEGIDGN---GVVCCPLGCGQCAGSGCSTAGAANGLTSSSCCGGGIKSSGNYCDDTGVAPCIYGSAPDADXXXXXXXXX------------------XVGTCNDGIEGIDGN---GVVCCPLGCGQCAGSGCSTAGAANGLTSSSCCGGGIKSSGNYCDDTGVAPCIYGSA 685
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1137.1220.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JC43_9PHAE1.470e-3040.34Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JZG5_9PHAE7.540e-2940.64Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JGP9_9PHAE1.410e-2740.94Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FQV4_ECTSI1.980e-2739.55Unsaturated glucuronyl hydrolase, family GH88 n=1 ... [more]
D7G8L8_ECTSI8.330e-2737.50Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JJ37_9PHAE1.410e-2631.68Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JUS5_9PHAE1.690e-2438.67MEP12 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 ... [more]
D7G651_ECTSI7.360e-2438.64Mannuronan C-5-epimerase C-terminal n=1 Tax=Ectoca... [more]
D7FJ68_ECTSI5.060e-2336.17WSC domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5L8H5_9PHAE7.690e-2337.50Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig1137contigH-canaliculatus_F_contig1137:16410..21348 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score80.9
Seed ortholog evalue8.2e-13
Seed eggNOG ortholog2880.D7FUJ9
EggNOG free text desc.Glycosyl Hydrolase Family 88
EggNOG OGs2CYCX@1,2S3MN@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons8
Model size2035
Cds size651
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig1137.1220.1prot_H-canaliculatus_F_contig1137.1220.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig1137 17547..20287 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928820.5825136-UTR-H-canaliculatus_F_contig1137:16409..164811622928820.5825136-UTR-H-canaliculatus_F_contig1137:16409..16481Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1137 16410..16481 +
1696845577.3838112-UTR-H-canaliculatus_F_contig1137:16409..164811696845577.3838112-UTR-H-canaliculatus_F_contig1137:16409..16481Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1137 16410..16481 +
1622928820.848758-UTR-H-canaliculatus_F_contig1137:16884..171001622928820.848758-UTR-H-canaliculatus_F_contig1137:16884..17100Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1137 16885..17100 +
1696845577.3942745-UTR-H-canaliculatus_F_contig1137:16884..171001696845577.3942745-UTR-H-canaliculatus_F_contig1137:16884..17100Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1137 16885..17100 +
1622928820.8608975-UTR-H-canaliculatus_F_contig1137:17511..175461622928820.8608975-UTR-H-canaliculatus_F_contig1137:17511..17546Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1137 17512..17546 +
1696845577.4030964-UTR-H-canaliculatus_F_contig1137:17511..175461696845577.4030964-UTR-H-canaliculatus_F_contig1137:17511..17546Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1137 17512..17546 +
1622928821.1014144-UTR-H-canaliculatus_F_contig1137:20287..213481622928821.1014144-UTR-H-canaliculatus_F_contig1137:20287..21348Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1137 20288..21348 +
1696845577.4654753-UTR-H-canaliculatus_F_contig1137:20287..213481696845577.4654753-UTR-H-canaliculatus_F_contig1137:20287..21348Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1137 20288..21348 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928820.8711157-CDS-H-canaliculatus_F_contig1137:17546..176101622928820.8711157-CDS-H-canaliculatus_F_contig1137:17546..17610Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1137 17547..17610 +
1696845577.4117754-CDS-H-canaliculatus_F_contig1137:17546..176101696845577.4117754-CDS-H-canaliculatus_F_contig1137:17546..17610Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1137 17547..17610 +
1622928820.8802373-CDS-H-canaliculatus_F_contig1137:18014..182301622928820.8802373-CDS-H-canaliculatus_F_contig1137:18014..18230Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1137 18015..18230 +
1696845577.4205124-CDS-H-canaliculatus_F_contig1137:18014..182301696845577.4205124-CDS-H-canaliculatus_F_contig1137:18014..18230Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1137 18015..18230 +
1622928820.891887-CDS-H-canaliculatus_F_contig1137:18629..187901622928820.891887-CDS-H-canaliculatus_F_contig1137:18629..18790Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1137 18630..18790 +
1696845577.4291725-CDS-H-canaliculatus_F_contig1137:18629..187901696845577.4291725-CDS-H-canaliculatus_F_contig1137:18629..18790Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1137 18630..18790 +
1622928820.9018834-CDS-H-canaliculatus_F_contig1137:19433..194951622928820.9018834-CDS-H-canaliculatus_F_contig1137:19433..19495Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1137 19434..19495 +
1696845577.440062-CDS-H-canaliculatus_F_contig1137:19433..194951696845577.440062-CDS-H-canaliculatus_F_contig1137:19433..19495Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1137 19434..19495 +
1622928821.0759127-CDS-H-canaliculatus_F_contig1137:19799..198871622928821.0759127-CDS-H-canaliculatus_F_contig1137:19799..19887Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1137 19800..19887 +
1696845577.4485035-CDS-H-canaliculatus_F_contig1137:19799..198871696845577.4485035-CDS-H-canaliculatus_F_contig1137:19799..19887Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1137 19800..19887 +
1622928821.088364-CDS-H-canaliculatus_F_contig1137:20227..202871622928821.088364-CDS-H-canaliculatus_F_contig1137:20227..20287Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1137 20228..20287 +
1696845577.4572542-CDS-H-canaliculatus_F_contig1137:20227..202871696845577.4572542-CDS-H-canaliculatus_F_contig1137:20227..20287Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1137 20228..20287 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig1137.1220.1

>prot_H-canaliculatus_F_contig1137.1220.1 ID=prot_H-canaliculatus_F_contig1137.1220.1|Name=mRNA_H-canaliculatus_F_contig1137.1220.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=217bp
MGPEVPDMTPYPETTGEAEQKVETCTNGIPGIQGSNADGIVCCPVECGQC
GTSNCHQAGLAVGLDNTHCCVTGVLVTTDLCSVSDEAPCIIESSVKESYY
EENASDTEIGPEVPYIEGATFLGCFEDKRGERTMEIGYINMIDMTNQECV
EFCKMEGHTYAGTENDYSCWCGDDEETIDRHGESTSCGKPCGGDISQVCG
GLLAVTTWATGLHAES*
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mRNA from alignment at H-canaliculatus_F_contig1137:16410..21348+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig1137.1220.1 ID=mRNA_H-canaliculatus_F_contig1137.1220.1|Name=mRNA_H-canaliculatus_F_contig1137.1220.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=4939bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1137:16410..21348+ (Hapterophycus canaliculatus Oshoro5f female)
CATCACCAGCGCCGTACACGTCTCCGACGACGGAACCTTATGAGGAAACG
ACGGGGGAGGCGGAAGAGATTGGTTAGTATTGTGTATTGTGCCGTACAAC
GTTTCCCTCTGTATGTCCCTTTCAACGCCGTTCCTGCTTACATGGACTGC
CATGTTTTTGGAGTATGGTTGTGACGGCTAGAGTTGCGCCAGCGTGGGGC
GAGGAGATCGGCCGAGGCGCTAGCTCGAGTTGGTGGGTAACTAGAACGCT
CCCTATCTGATCCAAACTCTCGTGTCGACACTCCGTTCACTCGATGCGGA
GGGTCGGGAATACCCGCATGTCCTGTTGAATGCCACGGTTGGCGAACTAG
CCGTTCCGAGACACTGCCCGTTATGGTTCGCGTAGCAGGGTTCCGAAAAC
TTGGACCACAAGTTTTGTGAGACTGACACCTCCTTTCCCTACCCCAACGC
GCACACCCGACCAACCCCGTCGCAGAAGAAACTTGCACAAATGGGATCCC
TGGAATTGATGGCTCTAACGACGAGGGCATCGTTTGCTGCCCTGTGGAAT
GCGGCCAGTGCGGAAGCCAGGAATGCCACCAGGCGGGCTTGGCGGTGGGG
CTCGACAACACCCACTGCTGCGTCACCGGCGTCCTGGTCACGCAGGATCT
TTGCACTCTCTCCGGCGAAGCCCCGTGCATTATCGAAAGTAGTGAGTGGC
CCATCCTTATAAGATCCGTGTTGATCCTTTTCTGTGCAAAGCTCGCGTCG
TTGAAGTGTATCTCGGTTTTTATCTCTTCTGTGGATGCTTGCGGGGGACA
TTTCTAGCGCCAGCGGCGTACAGACCATTGCCCGTTTTCCACGTCCAGCG
ATGCCCGTTTTCCCGCCTCCACCCTGGGCGCAATGGTCCCATCCGTTCGC
GTCGACGCCCCAAGAACAGACTGATCCCACCGAATGGGGATATCGCGGGT
ATCGCGGCCAAAAGATGCCGCCGCTGCCATTCAAACACGGAGGAACCTCG
ACGACTGTTGATAGTGACGAAGACGTCTGTGTCTGCGTTTCGAAATCCGT
GACGCAGTACCTCTCCCCCCATCAAACCCACCGTGTTGCTCGATGCTTTC
AGGCGCGGAGGAATCTTCCTACGTCGCGAATGTTGTAATGGGGCCCGAAG
TGCCAGACATGACCCCCTATCCTGAAACGACCGGGGAAGCGGAACAGAAA
GGTGAGGACGGTGTCGTACCACCTCGGTTTTCTGTCCCTTTCGACGCGTT
TCGTGTTCCTCTTCGCGTGCCCCGGTGAGGGTAGTTCGTGTTTTGTTACA
GCGAGCAGAGATAGCGGCCGAGGGGCCACCCCTCAAGGGTGGGCAACTAT
CCCCCATGCGTAGGCAACGACTGTACCCCCTGTTCGATTCGAATACCCGG
GTTGGCTGTTGCTTGACTTGATGCTGAGGATGAGGATCACGCATGTGCAG
GGGTGACGGACCGCCCACGGTTGACGAAACACGTCGGCATTCCGCACTTT
TCGGCTTACGCAGGAGGGGTCTGAATGCGTTCGCGATTTTTGCTGGGCTG
ACATGCCCTCTCCCCCCCCCCATGTTGTGCGTGCGTTCGACCACCGCGGT
CGCAGTCGAGACTTGCACCAATGGAATCCCGGGAATCCAGGGATCCAACG
CCGACGGCATCGTCTGCTGCCCTGTCGAGTGCGGCCAGTGCGGAACCTCG
AATTGCCACCAGGCAGGCTTGGCGGTGGGGCTCGATAACACCCACTGCTG
CGTCACCGGCGTTCTGGTCACGACGGACCTTTGCTCCGTCTCCGACGAAG
CCCCGTGCATCATCGAAAGTAGTGAGTTGCCCATCCGAAACACACCGCGC
GAATACGTCAGGTTGTCCAATACTCGGTCGCTCTGCAATATCTCAGCTGT
TTTATCTCTAGCGACGCCTGCAAGGGGCCTTTCTTGGACGCGGAAAGCGT
CAGGGGCGTACAGGCCATTCATTGCCTTTTGTGCACTTTCAGCCATACAC
ATTATCCCACTCGGCCGCAGGCAAAAATGATCCCGGTAACTCAGTGGCGA
CGCCCCTCGAATTGGACCAATTCCACCCACTCAACGCGACGGTATCGCGG
CCGAAATAAACTGCCTCTCATGCTGAAAAGAATCGCTGAAGCTGATGCCG
AGGAACACGTCGGCGTTGCAAAATTTTCATGAGTACCCGGATCACTGCCC
CGCGACGGTTGACCTTTCAGGCGTGAAGGAATCGTACTACGAGGAGAATG
CCTCGGATACTGAGATCGGGCCGGAGGTCCCCTACATCGAAGGGGCCACC
TTCCTCGGTTGCTTCGAGGATAAGAGGGGAGAACGTACGATGGAGATCGG
GTATATCAACATGATCGATATGACCAACCAGGTAAACGACAACCATGCAC
GCAGTCAAGCACATCACCCATGTCCGATTAGGCCGTGTGTTATCGAGGCT
CTGAAAACCATTTTTTAACAACGAATGTTGTTTTTATTCTTTCGAGTCAT
TTGTCGATAATGTAGTACTCGTTAACTTGGTTGTACGTTAGGTTTGAAAA
ATCGTCGATGATGATGAGTTATCGGGGATCAAATCCCGGTTTTCCGAGCC
TCGTAAACACACGGCCTTACCCAGAGCGGTCGCCTCAAGTTCCGCCGTGC
AAAGCGTACCGATCCATCCACTCCTGCTCCGGGGAACCGATCACCGGCGC
TGACGACGTTGTTTTTGCCCTGGATCGCCGAAGGGTACGACACGTTTCGC
TCTCCCCGCGTCGATCGAATTGGAAACAGGAGTCTCCACGTTGTCGTTGG
TGTTGAGATTGCATCCACGCTTGAATTTCCCCCCAAAGCTTGAGTTGTTG
TATTCAATCACGGTGGAGAACAAGAAGCGTACCATGTTCAGTAATTTTGT
CCATACGGCACTGCTAGGTAGACCGCGGGGAACGAAGATGAAAGCGCAGG
GTATTGTGCTGACCTCTTTGCCGCTCGTCCTCGCCTTTATCTCTCCCAAT
TTGTCGCTCGACTCCAAACAACAGGAGTGTGTGGAGTTCTGCAAGATGGA
AGGCCACACCTACGCAGGAACCGAGAACGACTATTCGTAAGTCTTGCGAC
GGCGAAGTCGATGCGCTCGTGCTTGGCCCGTGCACCGACTCTGGTGTTCT
TCGTCTCGCCTGACGAGGCTTTGCCCTATTCACGCCCATATTCTACATCT
TTGGCGACGCTGTCCATATCTCGCACGTATTCGCCTCGGCCGAGTGTTAC
GTGCCGTGACATGCTGTCCGCGTCGTGTCGAGATTTCCATCGACAGAGGT
ATCATTTTCGACCGCGGTTGGCCTCTCAACCTCAAATCACTGCCTTCCGT
GGACCTATTTTTCCACGCCAACAACAACGCAATACCGTAGGTGCTGGTGC
GGAGACGACGAGGAGACCATCGACCGTCACGGAGAGAGCACCTCCTGCGG
GAAACCCTGCGGCGGTGACATCAGCCAGGTGAGCGTGCCCTCTCTCTGGG
ACACAACGCATGCGCCTTGATATTCAAGACTTGAACCAAACGTGAACCGA
ACGCGTTGCCTTTTTTTCCCCTTCTGGTGGCCAGCCCGGTGGGCGTTCCT
GCCCTTGCCCTCCCTCTTACGGGCGTCATAAGCATCAGCTCGTGCCCCTT
AGTACCGTCTCGAACCGATCGAGTTCCGATCGTGTCCCACAACAAGCTTC
CGTTGATCAGGCCGACCTCCCACGCTTACACGACGTCTTCTCTGACCTTC
TTGCCGTCTCCCTTTCACGTTGTATCCGATGTGCTCGTGTCTTGGCAAAT
TTATACGAATCTACTTAGGTGTGCGGCGGTCTCCTAGCGGTCACCACTTG
GGCCACCGGTCTGCACGCCGAATCCTGAGGTTCCCATGCAAAAAGCTTTC
TCGCGACGTTGAAAGCTGGTTCGTGGTTGTGGGACAGCGTAAGGGCGATG
AAGCGGCGGTGCGGCCGCCTCAAATAGACACTATATTTATGTAGACTAAG
ACCTTAAAATAGCTAACCTTTGTACGAACTTTCATGTGGAGGGGGCGGAG
GGAGAAAGCAGGCATGCCCGAGGAGGTCGACGTACGTAGCTTCTCATGGG
AGGGATCGAAAGTTTCGCGAGACGAGTTGTTCCGAGATCAGGCTGGAAAG
TGCGGAGTGATCCACCCGAATCATGGTCAGAGTGGAGAAGGGACAGAAAC
TGTTAGAATGCCAATAAACTCGAGTTTCAGCGTGTCGTAATTTGGCCTCA
AGGTTGCGGTTTTGTGTTGTGCCTCTGGAGGAGGCAAACCGAACAGTTTG
CACAAGCATGGTTGTGTTGCGATGGCGAGCTCCAGTCAACATGGCCGTGT
GTTGGAGTTAAGTGTTTTGTTCGACTTTGATCACAGTTCTCCCTTTTGTA
TGTTGTGGAGGTTGACCCGTCGCAGGTTCTTGATGTTTGGTGTTTGCGAT
GTTGCGCTCATGTTAATGGGTGATGCGCGGCGTCCATCCTCGTGTTTTCG
CCGGAGGATGCTTCTTCAGCCTCGGCCATGTGCTGTGAAATTTGGATGAT
GTGGGGTGCGTTGCGTCGGTCGTGTGCTTTAGTGTGGACGCGGTGTGGTG
AGTTCTTCACGTTCTCCAGGCCGATATGTGATGTAGCAAAATAACGGGGG
CGTTGCGGGTTTTGACCTATTTTTTGGTAGGGTTTCGTCTTGACAAGGCG
GTGGAAGAGTTAGGACCTCTCCGTTTAGGGCACAGTCCACGGTACGAGTA
AGGTGATGCTGTCCTATGGAGGAAAGGAGCAAAGAGGTCCATCGTGGGTC
GGTTCACCCGTTCACTGCAGTATTTTTACCACCGTCTATCAGGTCGGTGT
CACAGTATATCTCGAAATATTTTTTATCTCGTTGAGTCTCTTGCAAACAA
CTGAAAAACGAAGTTCAATTCTAAAGTGCATGTTCGTCG
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig1137:16410..21348+

>mRNA_H-canaliculatus_F_contig1137.1220.1 ID=mRNA_H-canaliculatus_F_contig1137.1220.1|Name=mRNA_H-canaliculatus_F_contig1137.1220.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1302bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1137:16410..21348+ (Hapterophycus canaliculatus Oshoro5f female)
ATGGGGCCCGAAGTGCCAGACATGACCCCCTATCCTGAAACGACCGGGGA
AGCGGAACAGAAAGATGGGGCCCGAAGTGCCAGACATGACCCCCTATCCT
GAAACGACCGGGGAAGCGGAACAGAAAGTCGAGACTTGCACCAATGGAAT
CCCGGGAATCCAGGGATCCAACGCCGACGGCATCGTCTGCTGCCCTGTCG
AGTGCGGCCAGTGCGGAACCTCGAATTGCCACCAGGCAGGCTTGGCGGTG
GGGCTCGATAACACCCACTGCTGCGTCACCGGCGTTCTGGTCACGACGGA
CCTTTGCTCCGTCTCCGACGAAGCCCCGTGCATCATCGAAAGTATCGAGA
CTTGCACCAATGGAATCCCGGGAATCCAGGGATCCAACGCCGACGGCATC
GTCTGCTGCCCTGTCGAGTGCGGCCAGTGCGGAACCTCGAATTGCCACCA
GGCAGGCTTGGCGGTGGGGCTCGATAACACCCACTGCTGCGTCACCGGCG
TTCTGGTCACGACGGACCTTTGCTCCGTCTCCGACGAAGCCCCGTGCATC
ATCGAAAGTAGCGTGAAGGAATCGTACTACGAGGAGAATGCCTCGGATAC
TGAGATCGGGCCGGAGGTCCCCTACATCGAAGGGGCCACCTTCCTCGGTT
GCTTCGAGGATAAGAGGGGAGAACGTACGATGGAGATCGGGTATATCAAC
ATGATCGATATGACCAACCAGGCGTGAAGGAATCGTACTACGAGGAGAAT
GCCTCGGATACTGAGATCGGGCCGGAGGTCCCCTACATCGAAGGGGCCAC
CTTCCTCGGTTGCTTCGAGGATAAGAGGGGAGAACGTACGATGGAGATCG
GGTATATCAACATGATCGATATGACCAACCAGGAGTGTGTGGAGTTCTGC
AAGATGGAAGGCCACACCTACGCAGGAACCGAGAACGACTATTCGAGTGT
GTGGAGTTCTGCAAGATGGAAGGCCACACCTACGCAGGAACCGAGAACGA
CTATTCGTGCTGGTGCGGAGACGACGAGGAGACCATCGACCGTCACGGAG
AGAGCACCTCCTGCGGGAAACCCTGCGGCGGTGACATCAGCCAGGTGCTG
GTGCGGAGACGACGAGGAGACCATCGACCGTCACGGAGAGAGCACCTCCT
GCGGGAAACCCTGCGGCGGTGACATCAGCCAGGTGTGCGGCGGTCTCCTA
GCGGTCACCACTTGGGCCACCGGTCTGCACGCCGAATCCTGAGTGTGCGG
CGGTCTCCTAGCGGTCACCACTTGGGCCACCGGTCTGCACGCCGAATCCT
GA
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