mRNA_H-canaliculatus_F_contig11330.1197.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig11330.1197.1
Unique NamemRNA_H-canaliculatus_F_contig11330.1197.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig11330.1197.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig11330contigH-canaliculatus_F_contig11330:2374..3299 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size222
Cds size186
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig11330.1197.1prot_H-canaliculatus_F_contig11330.1197.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig11330 2409..3299 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928817.3309433-UTR-H-canaliculatus_F_contig11330:2373..24081622928817.3309433-UTR-H-canaliculatus_F_contig11330:2373..2408Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig11330 2374..2408 -
1696845576.143619-UTR-H-canaliculatus_F_contig11330:2373..24081696845576.143619-UTR-H-canaliculatus_F_contig11330:2373..2408Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig11330 2374..2408 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928817.3470318-CDS-H-canaliculatus_F_contig11330:2408..24441622928817.3470318-CDS-H-canaliculatus_F_contig11330:2408..2444Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11330 2409..2444 -
1696845576.152058-CDS-H-canaliculatus_F_contig11330:2408..24441696845576.152058-CDS-H-canaliculatus_F_contig11330:2408..2444Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11330 2409..2444 -
1622928817.3574162-CDS-H-canaliculatus_F_contig11330:3149..32991622928817.3574162-CDS-H-canaliculatus_F_contig11330:3149..3299Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11330 3150..3299 -
1696845576.1605413-CDS-H-canaliculatus_F_contig11330:3149..32991696845576.1605413-CDS-H-canaliculatus_F_contig11330:3149..3299Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11330 3150..3299 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig11330.1197.1

>prot_H-canaliculatus_F_contig11330.1197.1 ID=prot_H-canaliculatus_F_contig11330.1197.1|Name=mRNA_H-canaliculatus_F_contig11330.1197.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=62bp
VFLLLYLHHLRRPIISSAKRQYPPQPRPLRCSCSTARESELQQLSAIITQ
HGQSHASEAGL*
back to top

mRNA from alignment at H-canaliculatus_F_contig11330:2374..3299-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig11330.1197.1 ID=mRNA_H-canaliculatus_F_contig11330.1197.1|Name=mRNA_H-canaliculatus_F_contig11330.1197.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=926bp|location=Sequence derived from alignment at H-canaliculatus_F_contig11330:2374..3299- (Hapterophycus canaliculatus Oshoro5f female)
GTCTTCCTGCTGCTGTACCTGCACCACCTCCGACGTCCGATTATCAGCTC
CGCGAAGCGACAGTACCCTCCTCAACCTCGTCCATTGCGCTGTTCTTGTT
CAACCGCAAGAGAGAGTGAGCTGCAGCAGCTCAGTGCCATAATAACGCAG
GTGATCACATCAGATTGATGAGGTCCTGTAGGGGCTGAGATCGAAGTATA
GGTGACCCTTTGCTCTACTATCGACCACGACAGCAGTACCTCTGGTACTC
TTGGCTCGAAAGCTTGCCATGAATTGCTACCTGAGGTGATGCGCAGCGAG
GTTGCACCCCCTGTGCCCATAACGTACCCGACCATCCGCTCGAGCTTGCG
TCGAACCGTACTGAGAGAAACTTCATGTCGTACAACAACCGAGTCTCCAC
CTGGAGGTTCAGAGTATATGGAGAGTGCACATGTTTGCCATGTGTTCGCC
TCACCTATGGCATACGTGCGAACTCAGCTCAGCTGTACGTGTGTACTGCA
TCTCTGGGGGCCGTGAGTTAGCATGTAAACACCGAGGTGCCTCAATGGAA
CGATTGGTGACGGTGTTTCACAGCAGGAATGCCGTTTAGAACCCAGACGA
GTCACTCCGAAGATGTCTTCGGGAGAGCAGTTGTGCTCGTGCTTGTACCT
AGAGTCGTGGAGAGGTGAGGCACCGGCTTCGGTTCGTTGGCTTGAGTAGC
TGCAGTGAGCGTCTTGGTGCTCTGCGCTCCAGAATGCGACAATCCCTCTC
GCCCGCCTTTAGGGATGGGCTCCGGGAGACGCACAAGAGAGATATTGTGC
GAGTTGTTCTGCTGTGTAAACGACGTCTCTCCGTCGCACGGTGCTTCGCG
CGCAGCACGGACAGTCTCACGCATCGGAGGCTGGACTATGAGCAGCAGCG
ATGAGGACAACTCTGGAGAATCCAAG
back to top

Coding sequence (CDS) from alignment at H-canaliculatus_F_contig11330:2374..3299-

>mRNA_H-canaliculatus_F_contig11330.1197.1 ID=mRNA_H-canaliculatus_F_contig11330.1197.1|Name=mRNA_H-canaliculatus_F_contig11330.1197.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=372bp|location=Sequence derived from alignment at H-canaliculatus_F_contig11330:2374..3299- (Hapterophycus canaliculatus Oshoro5f female)
GTCTTCCTGCTGCTGTACCTGCACCACCTCCGACGTCCGATTATCAGCTC
CGCGAAGCGACAGTACCCTCCTCAACCTCGTCCATTGCGCTGTTCTTGTT
CAACCGCAAGAGAGAGTGAGCTGCAGCAGCTCAGTGCCATAATAACGCAG
GTCTTCCTGCTGCTGTACCTGCACCACCTCCGACGTCCGATTATCAGCTC
CGCGAAGCGACAGTACCCTCCTCAACCTCGTCCATTGCGCTGTTCTTGTT
CAACCGCAAGAGAGAGTGAGCTGCAGCAGCTCAGTGCCATAATAACGCAG
CACGGACAGTCTCACGCATCGGAGGCTGGACTATGACACGGACAGTCTCA
CGCATCGGAGGCTGGACTATGA
back to top