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Homology
BLAST of mRNA_H-canaliculatus_F_contig113.1168.1 vs. uniprot
Match: D7G5B2_ECTSI (EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5B2_ECTSI) HSP 1 Score: 194 bits (492), Expect = 6.760e-56 Identity = 188/215 (87.44%), Postives = 195/215 (90.70%), Query Frame = 1
Query: 1 MKRGKRCFIEDCLAAAPFASPSNPDVHACEIHKKRDFVNMRNKRCLEPGCYRNPHYGVSRLIDPNSKAQYXXXXXXXXXXXXXXXXXXXXXXXXXXRFSLPGEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRKDRVLIPGSTLKRGKFCEVHCDVSELTDKDAVVNDDISRNKKRSRVWM 645
MKRGKRCFI+ CLA APFASP PDVHACE+HKKRDFVNMRNKRCLEPGCYRNPHYGVSRLIDPNSKAQY XXXXXXXXXXXXXXXXXXXXXX RFSLPGEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX KDRV+IPGS KRGKFCE+HCDV+EL DKD V D + +KKR R WM
Sbjct: 1 MKRGKRCFIQSCLAPAPFASPLQPDVHACEVHKKRDFVNMRNKRCLEPGCYRNPHYGVSRLIDPNSKAQYCTKXXXXXXXXXXXXXXXXXXXXXXPRFSLPGEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKDRVVIPGSAKKRGKFCEIHCDVNELVDKD-VSTDGTASDKKRGRAWM 214
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name | Value |
Hectar predicted targeting category | other localisation |
Exons | 6 |
Model size | 1365 |
Cds size | 1365 |
Stop | 1 |
Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type | Position |
1622928812.6342711-CDS-H-canaliculatus_F_contig113:18728..18857 | 1622928812.6342711-CDS-H-canaliculatus_F_contig113:18728..18857 | Hapterophycus canaliculatus Oshoro5f female | CDS | H-canaliculatus_F_contig113 18729..18857 + |
1696845574.0282457-CDS-H-canaliculatus_F_contig113:18728..18857 | 1696845574.0282457-CDS-H-canaliculatus_F_contig113:18728..18857 | Hapterophycus canaliculatus Oshoro5f female | CDS | H-canaliculatus_F_contig113 18729..18857 + |
1622928812.6535232-CDS-H-canaliculatus_F_contig113:19651..19754 | 1622928812.6535232-CDS-H-canaliculatus_F_contig113:19651..19754 | Hapterophycus canaliculatus Oshoro5f female | CDS | H-canaliculatus_F_contig113 19652..19754 + |
1696845574.039302-CDS-H-canaliculatus_F_contig113:19651..19754 | 1696845574.039302-CDS-H-canaliculatus_F_contig113:19651..19754 | Hapterophycus canaliculatus Oshoro5f female | CDS | H-canaliculatus_F_contig113 19652..19754 + |
1622928812.6754878-CDS-H-canaliculatus_F_contig113:20808..20942 | 1622928812.6754878-CDS-H-canaliculatus_F_contig113:20808..20942 | Hapterophycus canaliculatus Oshoro5f female | CDS | H-canaliculatus_F_contig113 20809..20942 + |
1696845574.0519693-CDS-H-canaliculatus_F_contig113:20808..20942 | 1696845574.0519693-CDS-H-canaliculatus_F_contig113:20808..20942 | Hapterophycus canaliculatus Oshoro5f female | CDS | H-canaliculatus_F_contig113 20809..20942 + |
1622928812.6919906-CDS-H-canaliculatus_F_contig113:21459..21746 | 1622928812.6919906-CDS-H-canaliculatus_F_contig113:21459..21746 | Hapterophycus canaliculatus Oshoro5f female | CDS | H-canaliculatus_F_contig113 21460..21746 + |
1696845574.0618665-CDS-H-canaliculatus_F_contig113:21459..21746 | 1696845574.0618665-CDS-H-canaliculatus_F_contig113:21459..21746 | Hapterophycus canaliculatus Oshoro5f female | CDS | H-canaliculatus_F_contig113 21460..21746 + |
1622928812.7092633-CDS-H-canaliculatus_F_contig113:21931..22266 | 1622928812.7092633-CDS-H-canaliculatus_F_contig113:21931..22266 | Hapterophycus canaliculatus Oshoro5f female | CDS | H-canaliculatus_F_contig113 21932..22266 + |
1696845574.0706952-CDS-H-canaliculatus_F_contig113:21931..22266 | 1696845574.0706952-CDS-H-canaliculatus_F_contig113:21931..22266 | Hapterophycus canaliculatus Oshoro5f female | CDS | H-canaliculatus_F_contig113 21932..22266 + |
1622928812.7234468-CDS-H-canaliculatus_F_contig113:22436..22813 | 1622928812.7234468-CDS-H-canaliculatus_F_contig113:22436..22813 | Hapterophycus canaliculatus Oshoro5f female | CDS | H-canaliculatus_F_contig113 22437..22813 + |
1696845574.0852134-CDS-H-canaliculatus_F_contig113:22436..22813 | 1696845574.0852134-CDS-H-canaliculatus_F_contig113:22436..22813 | Hapterophycus canaliculatus Oshoro5f female | CDS | H-canaliculatus_F_contig113 22437..22813 + |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-canaliculatus_F_contig113.1168.1 >prot_H-canaliculatus_F_contig113.1168.1 ID=prot_H-canaliculatus_F_contig113.1168.1|Name=mRNA_H-canaliculatus_F_contig113.1168.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=455bp
MKRGKRCFIEDCLAAAPFASPSNPDVHACEIHKKRDFVNMRNKRCLEPGC YRNPHYGVSRLIDPNSKAQYCTKHKAPGMQNVNGGRCAGPDCSKQPRFSL PGEKGKYCSKHREDGMVDVLYTPCAAEGCTKHPHFGHVEGGPRYCAKHRA EGMVDVKHRRCAIKSCRKDRVLIPGSTLKRGKFCEVHCDVSELTDKDAVV NDDISRNKKRSRVWMGETEDEMERMSSEGSQVGSSMGDAGKNMNLSYDYS STRSVGPSIREAAQGLAHLATLARRERTPQCSDEAAASMSRGRGHIPGHG SYQPAEHSESFSRGAARALASRGPSQAEREHHVVKPGSERPLFYPASTAS SEPGPYPLFKRDRLESDAALEAVRPRMSPGLCSNTGTGSGTPSPAPASPF RLRYFEPESSSSEYSAYPPPWEYTRERPSASWTEGSNVSGRLPTHGWNNH PSAP* back to topmRNA from alignment at H-canaliculatus_F_contig113:18729..22813+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_H-canaliculatus_F_contig113.1168.1 ID=mRNA_H-canaliculatus_F_contig113.1168.1|Name=mRNA_H-canaliculatus_F_contig113.1168.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=4085bp|location=Sequence derived from alignment at H-canaliculatus_F_contig113:18729..22813+ (Hapterophycus canaliculatus Oshoro5f female) ATGAAAAGAGGGAAGAGATGTTTCATCGAGGACTGTTTGGCCGCGGCTCC
ATTCGCAAGCCCGTCCAACCCCGACGTGCACGCGTGCGAGATCCATAAAA
AGAGGGACTTTGTCAACATGAGGAACAAGGTGAATACTCGAAAGGAGGTC
GACTCCGGCGTGCTTTGCTGCAGTACAAGCCTACCGTGGATACTCACGAA
TGTACCCAGCTGGGGGTTGAAGTAGAAGCTGGGCAGCAAGCAGGACGTTC
CTGCTGCATGCTTGATGATATTTCAAAAGTGGTTCCTGTGGTCAAGCACT
GAACCAGCGAACAAGAAGCGTGCACCACGGGCGGTGTCGGATGTGCTGCT
GCCGCTGCCGCTGTCACACTCCCCAACAGCAAAACTTCTTACCAAAACAA
TCCTGTGTGCCATTCTGAGGCTTCCCATCAAGCAACATAAGTGTTGAGGG
ATTGGAACTCTCATTGTCTTGCATGCCGTCGCGTCTCTCGACCGGTAAAT
GACGAGCAGAGAAGAGTGGTCGGACGGAGCCCGCAAGTGCCTCTTGTCAC
TCCCACGTCAACTTCATAACCAAGCACAAGAAATAATGGGGAGGGAGATG
ACACGAACATGTCGGTGTTGTCTACACCGTGCCAGTATACGGGTCCCGAG
TCGGTCATGCATGCAGCATTCGTGGTGGCTTTCTTTCGGCCGAGGATACC
CTTTACTCATCGTGACCATACCCTCCTTGTGATGTTGTCGGAGATTGGAA
AAAACGAAACCGCGCGGCGGAACTCTGTAGTTAAGTTCGTCGCGGACGGC
GTCGGCGTCGGCCGCGATATTTTTTATGCGAGAGCGCATCTCCCATGCCC
GTACTCGTTCGCCTGCCGCTCTCGGATTTGTGCTGTTTGCATTGGTAGTC
TGATGCGTTATTTTTTTTTGCAGCGCTGCCTGGAGCCAGGATGCTACCGC
AATCCACACTACGGAGTAAGCAGGCTTATCGACCCCAACAGCAAGGCTCA
GTACTGCACTAAGCATAAAGCCCCAGGTGTGTTTGTGTGTGTTTTGAGCG
TGAAAAGTCTGTAGCACGCATTTGCACCGCGGATTTTTCATGTGAACCTA
CTTGTAGAGCCTGTACATTCCCGACGATAAAACTTTCCAGAAAAAAATCA
TTGGTATTTTTTGGTGACCGCCACCGCCTGCACACAATAGAGGACAAACA
CTCTGTGGTGGATACCAGCGGCTTAGCAAAGTTATTCGAAGTGTTTCGGT
GCTGGCAAGCGGAAAGCAAAGCACAACGTTCGCGATGCCCTCTTTGCGCA
GTTCAGATGTGTTGATTTTTTGCTGGAAAGTAGTTATTATCGCCAGCAAC
TTGCGTGTGGCGTGCAGCACGCAGCCGAGAGAAGGTTTATCGCGCAAGCA
AGCTTGGTGTGTAATCTTCTTCCTGACGTTGATGCTGAATACCCTTAATG
TATGACGACCTGGCCTCTAGACGTTGCACAGCACCACGCATTTCAATGCT
CCGTATCCGGCCCAAACCGACCGGTAAGAAGCAGAACCCGTAGACACAGG
GGGTCGAAATATGCATCCACTCGTGAACAGTTGAATTCATAATGTCGGAG
ACGAAAGTGTAGATCGGCTCCACGATATTCGTTCGAACGAAGATTTTTTA
CATCCCTGTGGAAGGAAAAGCTCAGCGACTGGCACGTTGCCCACCGTTTA
TCCGACCACTGCGTGCGCATCACACACCATACAGCCACAAAGCTTTCACT
TAAAACTTTCATGGCCATCATGTGCGGTTCATCCAGGGAAACCGATGACA
TTTTCCTCGAAAGCCGTTCTTCTACGTTCATGCGAGGGGTAAATTCGCGG
CACCTCATACGTACACACAAATCTTCCGAGAGACTGTTGAAGCAGGAACC
TTACGTATCGGCTCTGTCGACCTCCCAGGGAAAAACATGTTGTAAACATG
TTATTTGTTTCATCAGCCCTCGGTACCTTCTTTGCTTCTGTGGAATGGTT
CGGTAAAAAAGGGTAACGCTCAAAGCTCTAAGCCGTGACATGGACAAGGT
TCCACCAATCGCTTCTTCTTGTGCTCGCAGGTATGCAGAATGTGAATGGA
GGAAGGTGCGCGGGGCCAGACTGCTCCAAACAGCCACGATTTTCTTTACC
AGGAGAGAAAGGAAAATACTGCTCCAAACATCGCGAAGACGGGATGGTTG
ACGTTCTCTACACGGTGAGCATTTCCAAGCTCGTGCAGAACCACATACGG
AGTATAAAATAGTCGCTCGTATAACAATCTTCAAAAAAGATTGTTCTGTG
AAACATGAAGCAAATCCATTGAGTATAGGCATGACCGACCGCAAAAGATT
GGTTTGCAAGAAGTGGAATGTTCGCCCTTTCGCTTTTAATCTGAGCATGG
TGGTGCTAGGTTGGACAAACTGGGGCAACAAAGCAGTTAGACGATGTCGA
TTTACGTCTGCATCGCTTCCTTTGAAACTACAATTCAATGATGTGGTATC
CACGCACGCGAAAGCCTTGCCTAATCCAGTGTACATGTAGGGCCTTTCTT
TCGTTTTAACCGCACTAAATTGTCCATGATATTACGCTACTGGCAGTGTC
TATTCAAGTTCAGACTAGGGGCATTGAATTGTGGGGTTCCCCCCCTTTTG
CGCACTCCTCCATTTTGTCGCCATAAAGTGTACTTTGTCCGATACCTCGA
TCCCTTCTGCACATCCACTTTAAATCCCTAGCCCTGTGCGGCGGAAGGCT
GCACGAAGCATCCTCACTTCGGCCACGTCGAGGGTGGCCCACGCTACTGC
GCCAAGCATCGCGCGGAAGGGATGGTGGACGTCAAGCATAGGCGCTGCGC
TATCAAGAGCTGCCGCAAGGACCGCGTGCTGATTCCCGGTAGCACCTTGA
AGCGAGGAAAGTTTTGCGAGGTCCACTGCGACGTGAGCGAACTGACGGAC
AAGGATGCTGTGGTCAACGACGATATATCAAGGAACAAAAAGCGGAGCCG
TGTCTGGATGGGTGAAACGTAAGCTTGTGGATACCTGGCGTTTTGGTGGT
AAAAAGCTCGTCACATTAGAATCATTTTGGCACCGTAGGAACTCTTCGCA
AAATGTTCGCTCCGACTTGCACTTGGATCACTCCCGGTTGTTTTATGAGG
TGGTTACAGGTTCTGAGTCGCATTTCGCAAATATGTTCACTTTCCGAGCA
CAGGGAGGACGAAATGGAGCGCATGAGCTCTGAAGGGTCCCAGGTTGGTT
CTTCAATGGGAGACGCAGGGAAAAACATGAACTTGTCGTACGACTACTCT
TCGACCAGATCGGTGGGGCCAAGTATTCGCGAAGCCGCGCAGGGGTTAGC
TCATCTCGCTACGCTTGCTAGAAGGGAACGTACCCCACAGTGCTCGGATG
AAGCTGCGGCCTCCATGTCGCGAGGACGTGGCCATATTCCGGGCCACGGC
TCGTACCAGCCCGCGGAGCACTCCGAGAGTTTCAGCCGTGGAGCGGCGAG
GGCTCTTGCCAGCAGAGGACCTTCTCAGGCCGAACGAGGTGAGACGCCGC
CGCTCCGAACAGTCTTTGGGACCGTGCAGGTGCGACTGATGCTGAGAGGT
CTACTTCCAACGTGCGAGTCTTAAAGGGACACATTTGAGAAGATCTACGT
ACGTCTGCTCAGTATTTCCTCGCCACCCGTGCCGTCTATCCATCTATGAT
CTTGGCAGAACATCATGTTGTAAAGCCTGGCAGCGAGAGACCCTTATTTT
ACCCCGCAAGCACCGCCAGCTCCGAGCCGGGTCCTTACCCGCTGTTCAAG
CGGGACAGGCTGGAATCAGACGCTGCGCTCGAGGCTGTAAGACCCAGGAT
GTCTCCAGGCCTCTGCAGCAACACCGGCACCGGCAGTGGTACCCCTTCAC
CAGCACCCGCCTCGCCGTTCCGCCTTCGCTACTTCGAGCCCGAGTCTAGC
TCCTCCGAATATTCGGCTTATCCTCCCCCGTGGGAGTATACGAGGGAGAG
ACCGAGCGCTTCCTGGACCGAAGGCAGTAATGTCAGTGGGCGCTTGCCAA
CGCACGGATGGAATAATCACCCATCCGCGCCTTGA back to topCoding sequence (CDS) from alignment at H-canaliculatus_F_contig113:18729..22813+ >mRNA_H-canaliculatus_F_contig113.1168.1 ID=mRNA_H-canaliculatus_F_contig113.1168.1|Name=mRNA_H-canaliculatus_F_contig113.1168.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=2730bp|location=Sequence derived from alignment at H-canaliculatus_F_contig113:18729..22813+ (Hapterophycus canaliculatus Oshoro5f female) ATGAAAAGAGGGAAGAGATGTTTCATCGAGGACTGTTTGGCCGCGGCTCC ATTCGCAAGCCCGTCCAACCCCGACGTGCACGCGTGCGAGATCCATAAAA AGAGGGACTTTGTCAACATGAGGAACAAGATGAAAAGAGGGAAGAGATGT TTCATCGAGGACTGTTTGGCCGCGGCTCCATTCGCAAGCCCGTCCAACCC CGACGTGCACGCGTGCGAGATCCATAAAAAGAGGGACTTTGTCAACATGA GGAACAAGCGCTGCCTGGAGCCAGGATGCTACCGCAATCCACACTACGGA GTAAGCAGGCTTATCGACCCCAACAGCAAGGCTCAGTACTGCACTAAGCA TAAAGCCCCAGCGCTGCCTGGAGCCAGGATGCTACCGCAATCCACACTAC GGAGTAAGCAGGCTTATCGACCCCAACAGCAAGGCTCAGTACTGCACTAA GCATAAAGCCCCAGGTATGCAGAATGTGAATGGAGGAAGGTGCGCGGGGC CAGACTGCTCCAAACAGCCACGATTTTCTTTACCAGGAGAGAAAGGAAAA TACTGCTCCAAACATCGCGAAGACGGGATGGTTGACGTTCTCTACACGGT ATGCAGAATGTGAATGGAGGAAGGTGCGCGGGGCCAGACTGCTCCAAACA GCCACGATTTTCTTTACCAGGAGAGAAAGGAAAATACTGCTCCAAACATC GCGAAGACGGGATGGTTGACGTTCTCTACACGCCCTGTGCGGCGGAAGGC TGCACGAAGCATCCTCACTTCGGCCACGTCGAGGGTGGCCCACGCTACTG CGCCAAGCATCGCGCGGAAGGGATGGTGGACGTCAAGCATAGGCGCTGCG CTATCAAGAGCTGCCGCAAGGACCGCGTGCTGATTCCCGGTAGCACCTTG AAGCGAGGAAAGTTTTGCGAGGTCCACTGCGACGTGAGCGAACTGACGGA CAAGGATGCTGTGGTCAACGACGATATATCAAGGAACAAAAAGCGGAGCC GTGTCTGGATGGGTGAAACCCCTGTGCGGCGGAAGGCTGCACGAAGCATC CTCACTTCGGCCACGTCGAGGGTGGCCCACGCTACTGCGCCAAGCATCGC GCGGAAGGGATGGTGGACGTCAAGCATAGGCGCTGCGCTATCAAGAGCTG CCGCAAGGACCGCGTGCTGATTCCCGGTAGCACCTTGAAGCGAGGAAAGT TTTGCGAGGTCCACTGCGACGTGAGCGAACTGACGGACAAGGATGCTGTG GTCAACGACGATATATCAAGGAACAAAAAGCGGAGCCGTGTCTGGATGGG TGAAACGGAGGACGAAATGGAGCGCATGAGCTCTGAAGGGTCCCAGGTTG GTTCTTCAATGGGAGACGCAGGGAAAAACATGAACTTGTCGTACGACTAC TCTTCGACCAGATCGGTGGGGCCAAGTATTCGCGAAGCCGCGCAGGGGTT AGCTCATCTCGCTACGCTTGCTAGAAGGGAACGTACCCCACAGTGCTCGG ATGAAGCTGCGGCCTCCATGTCGCGAGGACGTGGCCATATTCCGGGCCAC GGCTCGTACCAGCCCGCGGAGCACTCCGAGAGTTTCAGCCGTGGAGCGGC GAGGGCTCTTGCCAGCAGAGGACCTTCTCAGGCCGAACGAGGGAGGACGA AATGGAGCGCATGAGCTCTGAAGGGTCCCAGGTTGGTTCTTCAATGGGAG ACGCAGGGAAAAACATGAACTTGTCGTACGACTACTCTTCGACCAGATCG GTGGGGCCAAGTATTCGCGAAGCCGCGCAGGGGTTAGCTCATCTCGCTAC GCTTGCTAGAAGGGAACGTACCCCACAGTGCTCGGATGAAGCTGCGGCCT CCATGTCGCGAGGACGTGGCCATATTCCGGGCCACGGCTCGTACCAGCCC GCGGAGCACTCCGAGAGTTTCAGCCGTGGAGCGGCGAGGGCTCTTGCCAG CAGAGGACCTTCTCAGGCCGAACGAGAACATCATGTTGTAAAGCCTGGCA GCGAGAGACCCTTATTTTACCCCGCAAGCACCGCCAGCTCCGAGCCGGGT CCTTACCCGCTGTTCAAGCGGGACAGGCTGGAATCAGACGCTGCGCTCGA GGCTGTAAGACCCAGGATGTCTCCAGGCCTCTGCAGCAACACCGGCACCG GCAGTGGTACCCCTTCACCAGCACCCGCCTCGCCGTTCCGCCTTCGCTAC TTCGAGCCCGAGTCTAGCTCCTCCGAATATTCGGCTTATCCTCCCCCGTG GGAGTATACGAGGGAGAGACCGAGCGCTTCCTGGACCGAAGGCAGTAATG TCAGTGGGCGCTTGCCAACGCACGGATGGAATAATCACCCATCCGCGCCT TGAAACATCATGTTGTAAAGCCTGGCAGCGAGAGACCCTTATTTTACCCC GCAAGCACCGCCAGCTCCGAGCCGGGTCCTTACCCGCTGTTCAAGCGGGA CAGGCTGGAATCAGACGCTGCGCTCGAGGCTGTAAGACCCAGGATGTCTC CAGGCCTCTGCAGCAACACCGGCACCGGCAGTGGTACCCCTTCACCAGCA CCCGCCTCGCCGTTCCGCCTTCGCTACTTCGAGCCCGAGTCTAGCTCCTC CGAATATTCGGCTTATCCTCCCCCGTGGGAGTATACGAGGGAGAGACCGA GCGCTTCCTGGACCGAAGGCAGTAATGTCAGTGGGCGCTTGCCAACGCAC GGATGGAATAATCACCCATCCGCGCCTTGA back to top
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