mRNA_H-canaliculatus_F_contig11233.1113.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig11233.1113.1
Unique NamemRNA_H-canaliculatus_F_contig11233.1113.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig11233.1113.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig11233contigH-canaliculatus_F_contig11233:217..1987 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size327
Cds size327
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928804.0568953-CDS-H-canaliculatus_F_contig11233:216..4641622928804.0568953-CDS-H-canaliculatus_F_contig11233:216..464Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11233 217..464 -
1696845571.3468597-CDS-H-canaliculatus_F_contig11233:216..4641696845571.3468597-CDS-H-canaliculatus_F_contig11233:216..464Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11233 217..464 -
1622928804.0687158-CDS-H-canaliculatus_F_contig11233:1908..19871622928804.0687158-CDS-H-canaliculatus_F_contig11233:1908..1987Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11233 1909..1987 -
1696845571.3568714-CDS-H-canaliculatus_F_contig11233:1908..19871696845571.3568714-CDS-H-canaliculatus_F_contig11233:1908..1987Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11233 1909..1987 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig11233.1113.1prot_H-canaliculatus_F_contig11233.1113.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig11233 217..1987 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig11233.1113.1

>prot_H-canaliculatus_F_contig11233.1113.1 ID=prot_H-canaliculatus_F_contig11233.1113.1|Name=mRNA_H-canaliculatus_F_contig11233.1113.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=109bp
MKRAGLWCPHSSRLEEQGKDCDFPTRASKAFDRPRPQQGRISPSKPPASS
DHGAPKETGRGRKRRRWGSQEAMGGPRVLQVRARNNTHAAPVQNHQDLPG
TGAADCAA*
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mRNA from alignment at H-canaliculatus_F_contig11233:217..1987-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig11233.1113.1 ID=mRNA_H-canaliculatus_F_contig11233.1113.1|Name=mRNA_H-canaliculatus_F_contig11233.1113.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=1771bp|location=Sequence derived from alignment at H-canaliculatus_F_contig11233:217..1987- (Hapterophycus canaliculatus Oshoro5f female)
ATGAAGAGGGCTGGCCTCTGGTGTCCACATAGTTCAAGGTTGGAGGAGCA
AGGGAAAGATTGTGATTTTCCCACACGAGGTGAGTTGTGTCCATCGCAAA
CGGCGACTTCGAGCAGTCCCATGTAAGAACTGAGCGCCACCTGCACATCG
GAAGAGGGGGACACATCTCCTGCCTTTCCTCCAAAATTTGAGACCTTCAC
CTTCCCTCTCCACTCCGCCGTTGGGGAATTATCTTCGGATGGAGAATATC
CTGCGTTGGCTGTACGAGGGTCTTGGCCCTCCAGCTTCTTTTCCTTCGTC
TCCTCTTGCCCAGCATCTTCTTGGGTGACTTCTGACCCAAGATAAGACCC
ATTTTTATGACCCGGCCCAAATCATGTTTTTTAGTCGAGGCCTGCAGGAG
TGAGACTCGCAATCCCAGCACAGCTACACAAACAGGACACGCGTTGTCGA
ACGAAACCGCAGGTTTTCTTGCCCAGAACATCGTTCTCCACCCACCTGGG
TACTCAGTTGCGGTCGTTACGGCTCCACTCTCAACCTGTACACCACCGTG
TACAGCAGCCCCGCGACCTCCCGTTCAGAACGCTCCCCTCCGTTTGTGGA
AGATCGTGTTTCGTTGAGCCCTTTATGTACATTACAGGTGAATGCGGACC
AAATTCGAGATGGCGGGAAAAAAGATCCTCTAACCTCTTATTTGCGCTGT
CGGTCTACGGCCCACGCGTGTGCCGATGCCTTTCTATTCGTGAACGCTCG
ATTCGAAGGCTTGACCCTTCTGCTCACCCCCCCGTCCCCCCATGCGAATA
TCCCGCCGTGAACACGACCAGATTCGAAACTGCTTCTTCATTGTTTTGTA
ACGCCTAGTGAATCGACGGGTTTTTCACACCCGTCAGCAGGATGGCGCAT
GACGCGGTATCTGTATGAACCACCAAGCATGACAGGACCGTAAACGACAG
GCTAGACAGCATCGAAACGCGCAAAAACAAAGTCCAGAGCCGCACATGTC
ACGCCGTGTGAAACGCGAGGACTCTTCTGGAGATAGTACATACCCGCAGC
CTTCACCTCACGCCTGCAACCCGCCCGCAACCCCTGTCCCTCCAGCCCCG
CGCACGCCGGCATTCTATCTGATACCATAAGAATCAGGGTCTCGGCTTAG
GGGTGCATTTTTTTTCCCGGTCCGATATCTCGACAACGGAGAGGGTGCCA
ACGCCGGGGAGGGTGCCATTGGGAAGATCGTGTCCTGTGCATTCCGGACG
TGTACTTTTCAGTGTCTGCATACCCTTCCCGATGTCGAGTAATCTGACCG
CAAAAAAGCCGCACCCCTGTGCCAAGGCTCGCATCCTTACGGAACACAAA
CAATAAGCGACGTACATGAGTAACTCCTCGGTGGTACCTTGAACTTCCAA
TCGGCGTCAACGTCCATACAGTGATCAGATGTCTCCCAAAGGGGAAGGCG
CACACGAGTCCACTCCAATTTTCCTTTTTTGCTCTCCCCCTCGATCGAAC
GTGGACGGAAAAAAACCCAGCAGCAAGCAAGGCGTTCGATCGGCCGAGGC
CCCAGCAGGGACGAATAAGCCCATCAAAACCACCGGCATCATCGGACCAT
GGAGCCCCCAAGGAGACCGGGAGAGGGAGGAAGCGACGGCGATGGGGGTC
CCAGGAAGCAATGGGTGGACCCCGGGTACTCCAAGTACGCGCCCGGAACA
ACACCCACGCCGCACCCGTCCAGAATCACCAGGACCTACCCGGAACCGGC
GCTGCTGACTGCGCGGCGTAG
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig11233:217..1987-

>mRNA_H-canaliculatus_F_contig11233.1113.1 ID=mRNA_H-canaliculatus_F_contig11233.1113.1|Name=mRNA_H-canaliculatus_F_contig11233.1113.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=654bp|location=Sequence derived from alignment at H-canaliculatus_F_contig11233:217..1987- (Hapterophycus canaliculatus Oshoro5f female)
ATGAAGAGGGCTGGCCTCTGGTGTCCACATAGTTCAAGGTTGGAGGAGCA
AGGGAAAGATTGTGATTTTCCCACACGAGATGAAGAGGGCTGGCCTCTGG
TGTCCACATAGTTCAAGGTTGGAGGAGCAAGGGAAAGATTGTGATTTTCC
CACACGAGCAAGCAAGGCGTTCGATCGGCCGAGGCCCCAGCAGGGACGAA
TAAGCCCATCAAAACCACCGGCATCATCGGACCATGGAGCCCCCAAGGAG
ACCGGGAGAGGGAGGAAGCGACGGCGATGGGGGTCCCAGGAAGCAATGGG
TGGACCCCGGGTACTCCAAGTACGCGCCCGGAACAACACCCACGCCGCAC
CCGTCCAGAATCACCAGGACCTACCCGGAACCGGCGCTGCTGACTGCGCG
GCGTAGCAAGCAAGGCGTTCGATCGGCCGAGGCCCCAGCAGGGACGAATA
AGCCCATCAAAACCACCGGCATCATCGGACCATGGAGCCCCCAAGGAGAC
CGGGAGAGGGAGGAAGCGACGGCGATGGGGGTCCCAGGAAGCAATGGGTG
GACCCCGGGTACTCCAAGTACGCGCCCGGAACAACACCCACGCCGCACCC
GTCCAGAATCACCAGGACCTACCCGGAACCGGCGCTGCTGACTGCGCGGC
GTAG
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