mRNA_H-canaliculatus_F_contig11196.1076.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig11196.1076.1
Unique NamemRNA_H-canaliculatus_F_contig11196.1076.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig11196.1076.1 vs. uniprot
Match: D7G6K3_ECTSI (2-cys peroxiredoxin n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6K3_ECTSI)

HSP 1 Score: 156 bits (394), Expect = 1.590e-44
Identity = 76/84 (90.48%), Postives = 81/84 (96.43%), Query Frame = 1 
Query:    1 VAPHCGKCRQMMPFVKDLSEEFPEITFAKFDTTEEAISELSADLGVEALPAFRFYSKGQEVVDPVMGYKKKQLRAAVEALQKKA 252
            VAPHCGKCRQMMPFVK+LSEEFPE+TFAKFDTTEEAISELS DLGVEALPAFRFY KG+EVV+PVMGYKKK+LRAAVE LQKKA
Sbjct:  303 VAPHCGKCRQMMPFVKELSEEFPEVTFAKFDTTEEAISELSTDLGVEALPAFRFYRKGEEVVEPVMGYKKKKLRAAVEELQKKA 386
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BLAST of mRNA_H-canaliculatus_F_contig11196.1076.1 vs. uniprot
Match: A0A835YLA5_9STRA (2-cys peroxiredoxin n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YLA5_9STRA)

HSP 1 Score: 117 bits (292), Expect = 1.600e-29
Identity = 54/81 (66.67%), Postives = 70/81 (86.42%), Query Frame = 1 
Query:    1 VAPHCGKCRQMMPFVKDLSEEFPEITFAKFDTTEEAISELSADLGVEALPAFRFYSKGQEVVDPVMGYKKKQLRAAVEALQ 243
            VAP+CGKCRQ+MP+V +LSE++ ++TFAKFDTTE+A+ ELSADLGV+ALPAF F++ G+ V  PV GYKKK L+A VEAL+
Sbjct:  300 VAPYCGKCRQIMPYVNELSEKYQDVTFAKFDTTEDALVELSADLGVQALPAFHFFNNGKPVGTPVTGYKKKALQAGVEALR 380
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BLAST of mRNA_H-canaliculatus_F_contig11196.1076.1 vs. uniprot
Match: A0A7S3UWW5_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UWW5_HETAK)

HSP 1 Score: 107 bits (267), Expect = 6.360e-26
Identity = 53/80 (66.25%), Postives = 64/80 (80.00%), Query Frame = 1 
Query:    1 VAPHCGKCRQMMPFVKDLSEEFPEITFAKFDTTEEAISELSADLGVEALPAFRFYSKGQEVVDPVMGYKKKQLRAAVEAL 240
            VAP CGKCRQ+MPFV  L+   P +TFAKFDTTE+A+SELSA+LGV+ALPAFRF+  GQ   + V+GYKKK L+ AVE L
Sbjct:  296 VAPWCGKCRQIMPFVNKLAAGHPGVTFAKFDTTEDALSELSAELGVKALPAFRFFKNGQPSGEVVVGYKKKPLQDAVEKL 375
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BLAST of mRNA_H-canaliculatus_F_contig11196.1076.1 vs. uniprot
Match: A0A150GS94_GONPE (Thioredoxin-dependent peroxiredoxin n=1 Tax=Gonium pectorale TaxID=33097 RepID=A0A150GS94_GONPE)

HSP 1 Score: 99.8 bits (247), Expect = 6.240e-23
Identity = 47/81 (58.02%), Postives = 62/81 (76.54%), Query Frame = 1 
Query:    4 APHCGKCRQMMPFVKDLSEEFPEITFAKFDTTEEAISELSADLGVEALPAFRFYSKGQEVVDPVMGYKKKQLRAAVEALQK 246
            AP CGKCRQ+ PF+  L +++P +TFAKFDTT + +  L+ADLG++ALPAFRF+  G+EV +PV GYKKK L  AV +L K
Sbjct:  324 APWCGKCRQIGPFLDTLVDKYPGVTFAKFDTTAQPLEALTADLGIKALPAFRFFKGGKEVHEPVAGYKKKLLEDAVASLAK 404
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BLAST of mRNA_H-canaliculatus_F_contig11196.1076.1 vs. uniprot
Match: A0A0D2JFM6_9CHLO (Thioredoxin H-type 1 n=1 Tax=Monoraphidium neglectum TaxID=145388 RepID=A0A0D2JFM6_9CHLO)

HSP 1 Score: 93.6 bits (231), Expect = 1.590e-22
Identity = 44/80 (55.00%), Postives = 58/80 (72.50%), Query Frame = 1 
Query:    1 VAPHCGKCRQMMPFVKDLSEEFPEITFAKFDTTEEAISELSADLGVEALPAFRFYSKGQEVVDPVMGYKKKQLRAAVEAL 240
            +AP CGKCR + P V +L+ + P++TF K DTT +    LS +LGV+ALPAF+F+  GQEVVD V+GYKK+ L  AVE L
Sbjct:   66 MAPWCGKCRMIAPLVSELALKHPDLTFVKVDTTRDGFQGLSEELGVKALPAFKFFRGGQEVVDQVVGYKKRPLEEAVEKL 145
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BLAST of mRNA_H-canaliculatus_F_contig11196.1076.1 vs. uniprot
Match: A0A7S0QX20_9CHLO (Thioredoxin-dependent peroxiredoxin n=1 Tax=Pyramimonas obovata TaxID=1411642 RepID=A0A7S0QX20_9CHLO)

HSP 1 Score: 97.8 bits (242), Expect = 2.720e-22
Identity = 46/80 (57.50%), Postives = 61/80 (76.25%), Query Frame = 1 
Query:    1 VAPHCGKCRQMMPFVKDLSEEFPEITFAKFDTTEEAISELSADLGVEALPAFRFYSKGQEVVDPVMGYKKKQLRAAVEAL 240
            +AP CGKCRQ+ PFV  L ++ P++TFAKFDTT E +   SA+LGV+ALP F+F+  G+EVV  V+GYKKK L  AV++L
Sbjct:  303 MAPWCGKCRQIAPFVDTLIDQHPDVTFAKFDTTVEGMDVASAELGVKALPVFKFFKGGKEVVPEVVGYKKKPLEEAVKSL 382
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BLAST of mRNA_H-canaliculatus_F_contig11196.1076.1 vs. uniprot
Match: A0A835SPW0_9CHLO (Thioredoxin-dependent peroxiredoxin n=1 Tax=Chlamydomonas schloesseri TaxID=2026947 RepID=A0A835SPW0_9CHLO)

HSP 1 Score: 97.1 bits (240), Expect = 3.750e-22
Identity = 47/81 (58.02%), Postives = 59/81 (72.84%), Query Frame = 1 
Query:    4 APHCGKCRQMMPFVKDLSEEFPEITFAKFDTTEEAISELSADLGVEALPAFRFYSKGQEVVDPVMGYKKKQLRAAVEALQK 246
            AP CGKCRQ+ PF+  L +++P +TFAKFDTT  A+   + +LGV+ALPAFRF+  G+EVV PV GYKKK L  AV  L K
Sbjct:  274 APWCGKCRQIGPFLDTLVDKYPGVTFAKFDTTAPALEAAAGELGVKALPAFRFFKGGKEVVTPVTGYKKKPLEDAVAELAK 354
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BLAST of mRNA_H-canaliculatus_F_contig11196.1076.1 vs. uniprot
Match: A0A383VZ00_TETOB (Thioredoxin-dependent peroxiredoxin n=1 Tax=Tetradesmus obliquus TaxID=3088 RepID=A0A383VZ00_TETOB)

HSP 1 Score: 97.1 bits (240), Expect = 5.610e-22
Identity = 46/80 (57.50%), Postives = 60/80 (75.00%), Query Frame = 1 
Query:    1 VAPHCGKCRQMMPFVKDLSEEFPEITFAKFDTTEEAISELSADLGVEALPAFRFYSKGQEVVDPVMGYKKKQLRAAVEAL 240
            +AP CGKCR + PFV +L+E+ P + FAKFDT+ E +  LSA+L V+ALP FRFY  G+EVV+ V+GYKKK L  AV+ L
Sbjct:  311 MAPWCGKCRMIAPFVDELAEKHPNMVFAKFDTSMEQLEPLSAELNVKALPVFRFYKGGKEVVEQVVGYKKKPLEQAVQHL 390
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BLAST of mRNA_H-canaliculatus_F_contig11196.1076.1 vs. uniprot
Match: A0A835XZ28_9CHLO (Thioredoxin-dependent peroxiredoxin n=1 Tax=Edaphochlamys debaryana TaxID=47281 RepID=A0A835XZ28_9CHLO)

HSP 1 Score: 97.1 bits (240), Expect = 6.520e-22
Identity = 46/79 (58.23%), Postives = 58/79 (73.42%), Query Frame = 1 
Query:    4 APHCGKCRQMMPFVKDLSEEFPEITFAKFDTTEEAISELSADLGVEALPAFRFYSKGQEVVDPVMGYKKKQLRAAVEAL 240
            AP CGKCRQ+ PF+  L +++P +TFAKFDTT   +   + +LGV+ALPAFRF+  G+EV DPV GYKKK L  AV AL
Sbjct:  323 APWCGKCRQIGPFLDTLVDKYPGVTFAKFDTTAPELEAAAGELGVKALPAFRFFKGGKEVADPVTGYKKKPLEDAVAAL 401
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BLAST of mRNA_H-canaliculatus_F_contig11196.1076.1 vs. uniprot
Match: A0A8J4F4H6_9CHLO (Thioredoxin-dependent peroxiredoxin n=2 Tax=Volvox TaxID=3066 RepID=A0A8J4F4H6_9CHLO)

HSP 1 Score: 96.3 bits (238), Expect = 1.180e-21
Identity = 47/81 (58.02%), Postives = 59/81 (72.84%), Query Frame = 1 
Query:    4 APHCGKCRQMMPFVKDLSEEFPEITFAKFDTTEEAISELSADLGVEALPAFRFYSKGQEVVDPVMGYKKKQLRAAVEALQK 246
            AP CGKCRQ+  F+  L +++P +TFAKFDTT  A+  L+ADLGV+ALP FRF+  G+EV D V GYKKK L  AV A+ K
Sbjct:  324 APWCGKCRQIGSFLDSLVDKYPGVTFAKFDTTAPALESLAADLGVKALPTFRFFKGGKEVRDSVSGYKKKLLEEAVAAIAK 404
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig11196.1076.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G6K3_ECTSI1.590e-4490.482-cys peroxiredoxin n=1 Tax=Ectocarpus siliculosus... [more]
A0A835YLA5_9STRA1.600e-2966.672-cys peroxiredoxin n=1 Tax=Tribonema minus TaxID=... [more]
A0A7S3UWW5_HETAK6.360e-2666.25Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A150GS94_GONPE6.240e-2358.02Thioredoxin-dependent peroxiredoxin n=1 Tax=Gonium... [more]
A0A0D2JFM6_9CHLO1.590e-2255.00Thioredoxin H-type 1 n=1 Tax=Monoraphidium neglect... [more]
A0A7S0QX20_9CHLO2.720e-2257.50Thioredoxin-dependent peroxiredoxin n=1 Tax=Pyrami... [more]
A0A835SPW0_9CHLO3.750e-2258.02Thioredoxin-dependent peroxiredoxin n=1 Tax=Chlamy... [more]
A0A383VZ00_TETOB5.610e-2257.50Thioredoxin-dependent peroxiredoxin n=1 Tax=Tetrad... [more]
A0A835XZ28_9CHLO6.520e-2258.23Thioredoxin-dependent peroxiredoxin n=1 Tax=Edapho... [more]
A0A8J4F4H6_9CHLO1.180e-2158.02Thioredoxin-dependent peroxiredoxin n=2 Tax=Volvox... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig11196contigH-canaliculatus_F_contig11196:2580..3476 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score133.3
Seed ortholog evalue4.8e-29
Seed eggNOG ortholog2880.D7G6K3
KEGG rclassRC01003,RC01872
KEGG koko:K03386,ko:K03671,ko:K11186,ko:K13279,ko:K20011
KEGG ReactionR08360,R08362
KEGG Pathwayko00480,ko01100,ko04146,ko04214,ko04621,ko05418,map00480,map01100,map04146,map04214,map04621,map05418
GOsGO:0003674,GO:0003824,GO:0004791,GO:0004857,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006109,GO:0006950,GO:0006979,GO:0008047,GO:0008150,GO:0008152,GO:0009314,GO:0009416,GO:0009507,GO:0009532,GO:0009534,GO:0009536,GO:0009570,GO:0009579,GO:0009628,GO:0009636,GO:0009642,GO:0009987,GO:0015035,GO:0015036,GO:0016209,GO:0016491,GO:0016651,GO:0016667,GO:0016668,GO:0016671,GO:0019222,GO:0019725,GO:0019904,GO:0030234,GO:0031976,GO:0031984,GO:0033554,GO:0034599,GO:0042221,GO:0042592,GO:0043085,GO:0043086,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044092,GO:0044093,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0045454,GO:0047134,GO:0050789,GO:0050790,GO:0050794,GO:0050896,GO:0051716,GO:0055114,GO:0065007,GO:0065008,GO:0065009,GO:0070887,GO:0080090,GO:0097237,GO:0098754,GO:0098772,GO:0098869,GO:1990748
EggNOG free text desc.peroxiredoxin activity
EggNOG OGsCOG0450@1,COG0526@1,KOG0852@2759,KOG0907@2759
EC1.11.1.15
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03110,ko04147
Hectar predicted targeting categoryother localisation
Exons2
Model size255
Cds size225
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig11196.1076.1prot_H-canaliculatus_F_contig11196.1076.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig11196 2580..3446 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928798.475706-CDS-H-canaliculatus_F_contig11196:2579..27341622928798.475706-CDS-H-canaliculatus_F_contig11196:2579..2734Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11196 2580..2734 -
1696845568.8235576-CDS-H-canaliculatus_F_contig11196:2579..27341696845568.8235576-CDS-H-canaliculatus_F_contig11196:2579..2734Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11196 2580..2734 -
1622928798.4918334-CDS-H-canaliculatus_F_contig11196:3376..34461622928798.4918334-CDS-H-canaliculatus_F_contig11196:3376..3446Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11196 3377..3446 -
1696845568.836215-CDS-H-canaliculatus_F_contig11196:3376..34461696845568.836215-CDS-H-canaliculatus_F_contig11196:3376..3446Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11196 3377..3446 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928798.5041075-UTR-H-canaliculatus_F_contig11196:3446..34761622928798.5041075-UTR-H-canaliculatus_F_contig11196:3446..3476Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig11196 3447..3476 -
1696845568.8460305-UTR-H-canaliculatus_F_contig11196:3446..34761696845568.8460305-UTR-H-canaliculatus_F_contig11196:3446..3476Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig11196 3447..3476 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig11196.1076.1

>prot_H-canaliculatus_F_contig11196.1076.1 ID=prot_H-canaliculatus_F_contig11196.1076.1|Name=mRNA_H-canaliculatus_F_contig11196.1076.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=75bp
MMPFVKDLSEEFPEITFAKFDTTEEAISELSADLGVEALPAFRFYSKGQE
VVDPVMGYKKKQLRAAVEALQKKA*
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mRNA from alignment at H-canaliculatus_F_contig11196:2580..3476-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig11196.1076.1 ID=mRNA_H-canaliculatus_F_contig11196.1076.1|Name=mRNA_H-canaliculatus_F_contig11196.1076.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=897bp|location=Sequence derived from alignment at H-canaliculatus_F_contig11196:2580..3476- (Hapterophycus canaliculatus Oshoro5f female)
GTAGCACCGCACTGCGGCAAGTGCCGTCAGATGATGCCTTTCGTGAAAGA
TCTCAGCGAGGAGTTCCCTGAGATCACCTTCGCCAAGTTTGATACCACGG
GTAAGATGGGGCTGGAGTCAAGTACGGAGTGAGAGTTGGAGGGGTGGGGG
TGAAAAGGGGCCACGCGAATCGTAGGAAGAATCACGCGGGCAGACGCGCT
GCCGCGGATGATGACCCTCCCCTCGCTGACGCCTCGCTGTACCACTGGAA
AGCGTCCGGATGGTGATCCCTTGGATTTTGTGTTTGTTCTCGATGGGTGG
CCGCGCGTGCTGGCACCTGCTGCCGGCGGCGCGACCATACTCCGGTCTGC
TTGTCTGGCATTAGTACTGAGGAGAACGCCTGGAATTTTGTGGTACCTAA
TTCGCTTTTATTGTATGCTTTGTACGCGGTCGGTGGCTCATCAATTCAGT
AATCTTGGAAGCCCGACAAGCTGAATTTCAACTGACGGGCTAGAACGCGG
GAACCTGGCGCATCCTTAGTCTTCCCTCGTGGGTTCTTCGCCGTCTGTTT
CTGTAGGCACGGTAGCGCTTTTACTCAACAGATACGTCGAGTGTTACTGT
AGCACGGTAGCGCTTTGACTCAACAGGTATGTCAAGCCAAATTCCGTTGC
GTGATCGCATTTCCTTCGTTCGACGTGCAACCACCCTGCCCTCACGTTTG
CCACCGCTGTTCGAAACGCCGCGCCGCCTGGTCAATCTGTAGAGGAGGCG
ATTTCCGAGCTTTCGGCCGACCTCGGGGTGGAAGCCCTTCCTGCCTTCCG
CTTCTACAGCAAAGGCCAGGAGGTCGTGGACCCAGTGATGGGCTACAAGA
AGAAGCAGCTCAGAGCTGCCGTGGAGGCTCTGCAGAAAAAGGCGTAA
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig11196:2580..3476-

>mRNA_H-canaliculatus_F_contig11196.1076.1 ID=mRNA_H-canaliculatus_F_contig11196.1076.1|Name=mRNA_H-canaliculatus_F_contig11196.1076.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=450bp|location=Sequence derived from alignment at H-canaliculatus_F_contig11196:2580..3476- (Hapterophycus canaliculatus Oshoro5f female)
ATGATGCCTTTCGTGAAAGATCTCAGCGAGGAGTTCCCTGAGATCACCTT
CGCCAAGTTTGATACCACGGATGATGCCTTTCGTGAAAGATCTCAGCGAG
GAGTTCCCTGAGATCACCTTCGCCAAGTTTGATACCACGGAGGAGGCGAT
TTCCGAGCTTTCGGCCGACCTCGGGGTGGAAGCCCTTCCTGCCTTCCGCT
TCTACAGCAAAGGCCAGGAGGTCGTGGACCCAGTGATGGGCTACAAGAAG
AAGCAGCTCAGAGCTGCCGTGGAGGCTCTGCAGAAAAAGGCGTAAAGGAG
GCGATTTCCGAGCTTTCGGCCGACCTCGGGGTGGAAGCCCTTCCTGCCTT
CCGCTTCTACAGCAAAGGCCAGGAGGTCGTGGACCCAGTGATGGGCTACA
AGAAGAAGCAGCTCAGAGCTGCCGTGGAGGCTCTGCAGAAAAAGGCGTAA
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