mRNA_H-canaliculatus_F_contig11093.995.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig11093.995.1
Unique NamemRNA_H-canaliculatus_F_contig11093.995.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig11093.995.1 vs. uniprot
Match: D8LQV7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQV7_ECTSI)

HSP 1 Score: 163 bits (413), Expect = 2.570e-46
Identity = 84/92 (91.30%), Postives = 85/92 (92.39%), Query Frame = 1 
Query:   16 KLAYAHAVQLLVDVFLLLTPFALFSEVGFWSIVATGVLTTVRTGLFNLSKTFIDPLNNEDATIDSDCIIIDSLIKESANMGRRWTQGATAFP 291
            KLAYAHAVQLLVDVFLLLTPFALFSEVGFWSIVATGVLTT   GLFNLSKTFIDPLNNEDATIDSDCI+IDSLIKESAN G RWTQGA  FP
Sbjct:  385 KLAYAHAVQLLVDVFLLLTPFALFSEVGFWSIVATGVLTTFYQGLFNLSKTFIDPLNNEDATIDSDCIVIDSLIKESANTGSRWTQGAKVFP 476
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BLAST of mRNA_H-canaliculatus_F_contig11093.995.1 vs. uniprot
Match: A0A6H5JSF8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSF8_9PHAE)

HSP 1 Score: 97.8 bits (242), Expect = 4.420e-25
Identity = 46/50 (92.00%), Postives = 47/50 (94.00%), Query Frame = 1 
Query:  145 GLFNLSKTFIDPLNNEDATIDSDCIIIDSLIKESANMGRRWTQGATAFPF 294
            GLFNLSKTFIDPLNNEDATIDSDCI+IDSLIKESANMG RWTQGA  FPF
Sbjct:    4 GLFNLSKTFIDPLNNEDATIDSDCIVIDSLIKESANMGSRWTQGAKVFPF 53
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BLAST of mRNA_H-canaliculatus_F_contig11093.995.1 vs. uniprot
Match: A0A1E7EN29_9STRA (Cyclic nucleotide-binding domain-containing protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7EN29_9STRA)

HSP 1 Score: 85.1 bits (209), Expect = 3.460e-17
Identity = 45/93 (48.39%), Postives = 61/93 (65.59%), Query Frame = 1 
Query:   19 LAYAHAVQLLVDVFLLLTPFALFSEVGFWSIVATGVLTTVRTGLFNLSKTFIDPLNNEDATIDSDCII-IDSLIKESANMGRRWTQGATAFPF 294
            LAYAH VQL+VD+FL+L PFAL+SE+GFWS+ A G+L    +G+ +L+K  +DPL+N D   DS   + +  LI+ES     RW  G    PF
Sbjct:  591 LAYAHFVQLIVDIFLMLAPFALYSELGFWSVPAVGILNIFYSGMLDLAKILLDPLDNSDFYRDSAVNMDVGVLIRESNAGSNRWKSGLQKLPF 683
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BLAST of mRNA_H-canaliculatus_F_contig11093.995.1 vs. uniprot
Match: A0A1Z5JB46_FISSO (Cyclic nucleotide-binding domain-containing protein n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JB46_FISSO)

HSP 1 Score: 83.6 bits (205), Expect = 1.170e-16
Identity = 45/96 (46.88%), Postives = 60/96 (62.50%), Query Frame = 1 
Query:    7 CGPKLAYAHAVQLLVDVFLLLTPFALFSEVGFWSIVATGVLTTVRTGLFNLSKTFIDPLNNEDATIDSDCIIIDSLIKESANMGRRWTQGATAFPF 294
            C   LAY H VQ+LVD F LL+P AL++++G +SI   G+LT + TGL +L+K F+DPLNNE  T +S  + I  LI+ES     RW       PF
Sbjct:  459 CRMPLAYTHFVQILVDTFCLLSPLALYADLGAYSIFCVGILTLIYTGLLDLAKIFLDPLNNEKFTKNSIYMDIGVLIRESNAGSVRWKNAGAQLPF 554
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BLAST of mRNA_H-canaliculatus_F_contig11093.995.1 vs. uniprot
Match: A0A7S2P7A0_9STRA (Hypothetical protein n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2P7A0_9STRA)

HSP 1 Score: 81.3 bits (199), Expect = 4.170e-16
Identity = 48/95 (50.53%), Postives = 61/95 (64.21%), Query Frame = 1 
Query:   19 LAYAHAVQLLVDVFLLLTPFALFSEVGFWSIVATGVLTTVRTGLFNLSKTFIDPLNNE---DATIDSDCIIIDSLIKESANMGRRWTQGATAFPF 294
            LAYAH VQ+LVD FLL+ PFAL+SE+G WSI A G+LT    GL +L+K  +DPL+N+   DA ++ D   I  LI+ES     RW   A   PF
Sbjct:  246 LAYAHFVQVLVDSFLLIAPFALYSELGIWSIPAVGLLTLFYAGLLDLAKILLDPLDNDEFYDAPVNFD---IGVLIRESNAGSTRWKYSAEMLPF 337
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BLAST of mRNA_H-canaliculatus_F_contig11093.995.1 vs. uniprot
Match: A0A7S2P6J3_9STRA (Hypothetical protein n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2P6J3_9STRA)

HSP 1 Score: 81.3 bits (199), Expect = 7.670e-16
Identity = 48/95 (50.53%), Postives = 61/95 (64.21%), Query Frame = 1 
Query:   19 LAYAHAVQLLVDVFLLLTPFALFSEVGFWSIVATGVLTTVRTGLFNLSKTFIDPLNNE---DATIDSDCIIIDSLIKESANMGRRWTQGATAFPF 294
            LAYAH VQ+LVD FLL+ PFAL+SE+G WSI A G+LT    GL +L+K  +DPL+N+   DA ++ D   I  LI+ES     RW   A   PF
Sbjct:  494 LAYAHFVQVLVDSFLLIAPFALYSELGIWSIPAVGLLTLFYAGLLDLAKILLDPLDNDEFYDAPVNFD---IGVLIRESNAGSTRWKYSAEMLPF 585
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BLAST of mRNA_H-canaliculatus_F_contig11093.995.1 vs. uniprot
Match: A0A448YX59_9STRA (Cyclic nucleotide-binding domain-containing protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448YX59_9STRA)

HSP 1 Score: 81.3 bits (199), Expect = 7.710e-16
Identity = 44/95 (46.32%), Postives = 60/95 (63.16%), Query Frame = 1 
Query:   19 LAYAHAVQLLVDVFLLLTPFALFSEVGFWSIVATGVLTTVRTGLFNLSKTFIDPLNNEDATIDSDCII---IDSLIKESANMGRRWTQGATAFPF 294
            LAYAH VQ++VDVFL + PFAL+SE+G WS+ A GVL    +G+ +LSK  +DPL+N D +   D  +   +  LI+ES +   RW  G    PF
Sbjct:  522 LAYAHLVQVMVDVFLTMAPFALYSELGIWSVFAVGVLNIFYSGMNDLSKILLDPLDNCDGSFYQDSSMNMDVGVLIRESNDGSNRWKAGLQELPF 616
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BLAST of mRNA_H-canaliculatus_F_contig11093.995.1 vs. uniprot
Match: A0A7S4AB55_9STRA (Hypothetical protein n=1 Tax=Pseudo-nitzschia australis TaxID=44445 RepID=A0A7S4AB55_9STRA)

HSP 1 Score: 80.9 bits (198), Expect = 1.050e-15
Identity = 45/98 (45.92%), Postives = 64/98 (65.31%), Query Frame = 1 
Query:   19 LAYAHAVQLLVDVFLLLTPFALFSEVGFWSIVATGVLTTVRTGLFNLSKTFIDPLNN------EDATIDSDCIIIDSLIKESANMGRRWTQGATAFPF 294
            LAYAH VQ++VDVFL++ PFAL+SE+G WSIVA G+L    +G+ +LSK  +DPL+N      E+++++ D   +  LI+E      RWT G    PF
Sbjct:  513 LAYAHFVQVMVDVFLIMAPFALYSELGIWSIVAVGILHIFYSGMNDLSKILLDPLDNCNTAFNENSSVNMD---VGVLIREGNAGSTRWTTGLQELPF 607
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BLAST of mRNA_H-canaliculatus_F_contig11093.995.1 vs. uniprot
Match: A0A7S1G0Y0_9STRA (Hypothetical protein n=2 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1G0Y0_9STRA)

HSP 1 Score: 79.7 bits (195), Expect = 2.640e-15
Identity = 42/93 (45.16%), Postives = 62/93 (66.67%), Query Frame = 1 
Query:   19 LAYAHAVQLLVDVFLLLTPFALFSEVGFWSIVATGVLTTVRTGLFNLSKTFIDPLNNED-ATIDSDCIIIDSLIKESANMGRRWTQGATAFPF 294
            LAY   VQ+LVD ++L+ PFAL++E+G ++IVA G++T   TGL NL+K F+DPLNNE+    D++ + +  LI+ES     RW +     PF
Sbjct:  455 LAYTQFVQILVDTYVLIAPFALYAELGAYAIVAVGLITLFYTGLLNLAKIFLDPLNNENYCEADANFLDLGVLIRESNGASTRWRRVGEKLPF 547
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BLAST of mRNA_H-canaliculatus_F_contig11093.995.1 vs. uniprot
Match: A0A7S4R8L2_9STRA (Hypothetical protein n=3 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4R8L2_9STRA)

HSP 1 Score: 79.7 bits (195), Expect = 2.650e-15
Identity = 44/92 (47.83%), Postives = 57/92 (61.96%), Query Frame = 1 
Query:   19 LAYAHAVQLLVDVFLLLTPFALFSEVGFWSIVATGVLTTVRTGLFNLSKTFIDPLNNEDATIDSDCIIIDSLIKESANMGRRWTQGATAFPF 294
            LAY H VQ+LVD F+L+ P AL+ E+G +S VA G+LT   TG  +LSK F+DPLNNE  + DS  + +  LI+ES     RW       PF
Sbjct:  475 LAYVHLVQILVDTFVLIAPLALYPEIGAYSPVAVGILTFFYTGSLDLSKVFLDPLNNEKYSEDSIFMDLGILIRESNAASVRWYSAGGKLPF 566
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig11093.995.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LQV7_ECTSI2.570e-4691.30Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JSF8_9PHAE4.420e-2592.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A1E7EN29_9STRA3.460e-1748.39Cyclic nucleotide-binding domain-containing protei... [more]
A0A1Z5JB46_FISSO1.170e-1646.88Cyclic nucleotide-binding domain-containing protei... [more]
A0A7S2P7A0_9STRA4.170e-1650.53Hypothetical protein n=1 Tax=Skeletonema marinoi T... [more]
A0A7S2P6J3_9STRA7.670e-1650.53Hypothetical protein n=1 Tax=Skeletonema marinoi T... [more]
A0A448YX59_9STRA7.710e-1646.32Cyclic nucleotide-binding domain-containing protei... [more]
A0A7S4AB55_9STRA1.050e-1545.92Hypothetical protein n=1 Tax=Pseudo-nitzschia aust... [more]
A0A7S1G0Y0_9STRA2.640e-1545.16Hypothetical protein n=2 Tax=Corethron hystrix Tax... [more]
A0A7S4R8L2_9STRA2.650e-1547.83Hypothetical protein n=3 Tax=Ditylum brightwellii ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig11093contigH-canaliculatus_F_contig11093:3141..4287 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score167.9
Seed ortholog evalue2.3e-39
Seed eggNOG ortholog2880.D8LQV7
EggNOG free text desc.Bestrophin, RFP-TM, chloride channel
EggNOG OGs2BKDA@1,2S1IE@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categorysignal peptide
Exons3
Model size297
Cds size297
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig11093.995.1prot_H-canaliculatus_F_contig11093.995.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig11093 3141..4287 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928785.4886732-CDS-H-canaliculatus_F_contig11093:3140..32931622928785.4886732-CDS-H-canaliculatus_F_contig11093:3140..3293Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11093 3141..3293 -
1696845563.5875187-CDS-H-canaliculatus_F_contig11093:3140..32931696845563.5875187-CDS-H-canaliculatus_F_contig11093:3140..3293Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11093 3141..3293 -
1622928785.504906-CDS-H-canaliculatus_F_contig11093:3582..35921622928785.504906-CDS-H-canaliculatus_F_contig11093:3582..3592Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11093 3583..3592 -
1696845563.6005168-CDS-H-canaliculatus_F_contig11093:3582..35921696845563.6005168-CDS-H-canaliculatus_F_contig11093:3582..3592Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11093 3583..3592 -
1622928785.5217247-CDS-H-canaliculatus_F_contig11093:4153..42871622928785.5217247-CDS-H-canaliculatus_F_contig11093:4153..4287Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11093 4154..4287 -
1696845563.6103022-CDS-H-canaliculatus_F_contig11093:4153..42871696845563.6103022-CDS-H-canaliculatus_F_contig11093:4153..4287Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11093 4154..4287 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig11093.995.1

>prot_H-canaliculatus_F_contig11093.995.1 ID=prot_H-canaliculatus_F_contig11093.995.1|Name=mRNA_H-canaliculatus_F_contig11093.995.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=99bp
VVCGPKLAYAHAVQLLVDVFLLLTPFALFSEVGFWSIVATGVLTTVRTGL
FNLSKTFIDPLNNEDATIDSDCIIIDSLIKESANMGRRWTQGATAFPF*
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mRNA from alignment at H-canaliculatus_F_contig11093:3141..4287-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig11093.995.1 ID=mRNA_H-canaliculatus_F_contig11093.995.1|Name=mRNA_H-canaliculatus_F_contig11093.995.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=1147bp|location=Sequence derived from alignment at H-canaliculatus_F_contig11093:3141..4287- (Hapterophycus canaliculatus Oshoro5f female)
GTTGTCTGCGGCCCCAAGCTCGCTTACGCGCATGCGGTGCAGCTCCTGGT
GGACGTCTTCCTGCTGCTGACGCCGTTCGCTCTGTTCTCCGAGGTCGGCT
TCTGGTCCATCGTTGCGACAGGGGTGTTGACGACGTTCTACCAGGCGAGA
GAAAATCGCTCGTCCGGTAGTCCACACACGACGCGACATCCATTCTTGTT
CGGTTGGGTTGAATGGCTTCCTTGGTTGGGGTACAACACCACAGATTCTG
AAGTCGAATATAAAAAAAGCTGGTTGGAGTTGGTCAGTTGGTTGAGGCCC
TGCTGAAAACATTTCTATGCGGATCGAAGAGGAGGCACTGCTGATTTTTG
TCTTTGAAGGTATCGAGACAGCGAGGAGGCGTGGATGGTGAAGATTCGTA
ATGCACCGCGTACGAGCAAAGGCGAGTTTTGCCCGGGGGTCATCAACATC
TTGCTCTGTAACCCTCCAGGTGCTCGCGCTGAGCTTTCCGCAGTATGATC
ATTGGTCTCTTTTGATACCATCCTCTCGTCCTACCTCTCTCTTGGACGTC
CTAAATGTCGAAAAAAAAGAAAAAAACGAGCTAGATTTCGAACTGTTGGC
TTCTACCCATGCATCTGGACTCCGTCGTCTGCGCATTAAAGCTTACCTGC
TCAAATATTTCAGCTGCTGTGCTCTACCTCTCCAAACGATGGAAGTGTTC
GAACTGTGTAGTGGGCAAACAGGTAGGTTCAAAGTTTTTAAGCTGGGACT
CGGGGCGCGAATTTTGGGACGTTCAGAACGAGCCTGATTACTCTCCGTCA
ACACACAGGAGTGTTCTCGGCCACCGCCCTCGAAGTCACAGCGGGCTTAG
GTCTTGCCTCACCTTTTGCACCGCGCTCCATCTCTTCCCCATTCGTCTTT
CTGTATCGATATCCCGGCCCCCCAACCTCCCCCCCTCACCCCCCCACCCC
ACCCCCCCCAACCCCCCCTAACAAAACGACGACGGACAACCCAGGGCTTG
TTCAACCTGTCCAAGACCTTCATCGACCCCCTCAACAACGAGGACGCCAC
GATCGACAGCGACTGCATCATCATCGACAGCCTCATCAAGGAGAGCGCCA
ACATGGGGCGCCGGTGGACCCAAGGCGCGACCGCCTTCCCCTTCTAG
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig11093:3141..4287-

>mRNA_H-canaliculatus_F_contig11093.995.1 ID=mRNA_H-canaliculatus_F_contig11093.995.1|Name=mRNA_H-canaliculatus_F_contig11093.995.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=594bp|location=Sequence derived from alignment at H-canaliculatus_F_contig11093:3141..4287- (Hapterophycus canaliculatus Oshoro5f female)
GTTGTCTGCGGCCCCAAGCTCGCTTACGCGCATGCGGTGCAGCTCCTGGT
GGACGTCTTCCTGCTGCTGACGCCGTTCGCTCTGTTCTCCGAGGTCGGCT
TCTGGTCCATCGTTGCGACAGGGGTGTTGACGACGTTGTCTGCGGCCCCA
AGCTCGCTTACGCGCATGCGGTGCAGCTCCTGGTGGACGTCTTCCTGCTG
CTGACGCCGTTCGCTCTGTTCTCCGAGGTCGGCTTCTGGTCCATCGTTGC
GACAGGGGTGTTGACGACTGTTCGAACTTGTTCGAACTGGCTTGTTCAAC
CTGTCCAAGACCTTCATCGACCCCCTCAACAACGAGGACGCCACGATCGA
CAGCGACTGCATCATCATCGACAGCCTCATCAAGGAGAGCGCCAACATGG
GGCGCCGGTGGACCCAAGGCGCGACCGCCTTCCCCTTCTAGGGCTTGTTC
AACCTGTCCAAGACCTTCATCGACCCCCTCAACAACGAGGACGCCACGAT
CGACAGCGACTGCATCATCATCGACAGCCTCATCAAGGAGAGCGCCAACA
TGGGGCGCCGGTGGACCCAAGGCGCGACCGCCTTCCCCTTCTAG
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