mRNA_H-canaliculatus_F_contig11086.985.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig11086.985.1
Unique NamemRNA_H-canaliculatus_F_contig11086.985.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig11086.985.1 vs. uniprot
Match: A0A6H5K8E9_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K8E9_9PHAE)

HSP 1 Score: 201 bits (511), Expect = 1.820e-61
Identity = 109/132 (82.58%), Postives = 118/132 (89.39%), Query Frame = 1 
Query:  172 AGAPMMAGGGVGFVDVKTAKRGEVLQEGVIGTDAAREAKIEETLRKMGVQSIGEVRAEKAAEE-EGKSVAEQITSVFDLIPAETQLVMERVFIAGFALCLVFLVGCGCAIGVEAYFLSTAGKLPPDLDNFIV 564
            AGAPMMA GG GF DVKTAKRGE+LQ+G IG+D AREAKIEETLRKMGVQSIG+VRA KA E+ E KSV +QITS+FDLIP ETQLVMERVFIAGFA+CL+FLV CGCAIGVEAYFLST GKLPPDLD FIV
Sbjct:  114 AGAPMMASGG-GFADVKTAKRGEILQDGAIGSDDAREAKIEETLRKMGVQSIGQVRAAKAKEDKENKSVGQQITSIFDLIPPETQLVMERVFIAGFAVCLLFLVACGCAIGVEAYFLSTNGKLPPDLDKFIV 244
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig11086.985.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5K8E9_9PHAE1.820e-6182.58Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig11086contigH-canaliculatus_F_contig11086:274..2335 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score208.0
Seed ortholog evalue3.9e-51
Seed eggNOG ortholog2880.D8LNL5
EggNOG OGs2CAEN@1,2SG8G@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categorymitochondrion
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-08_006670.1
Exons4
Model size564
Cds size564
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig11086.985.1prot_H-canaliculatus_F_contig11086.985.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig11086 274..2335 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928784.2614105-CDS-H-canaliculatus_F_contig11086:273..4351622928784.2614105-CDS-H-canaliculatus_F_contig11086:273..435Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11086 274..435 -
1696845562.897811-CDS-H-canaliculatus_F_contig11086:273..4351696845562.897811-CDS-H-canaliculatus_F_contig11086:273..435Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11086 274..435 -
1622928784.282657-CDS-H-canaliculatus_F_contig11086:758..9251622928784.282657-CDS-H-canaliculatus_F_contig11086:758..925Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11086 759..925 -
1696845562.9118598-CDS-H-canaliculatus_F_contig11086:758..9251696845562.9118598-CDS-H-canaliculatus_F_contig11086:758..925Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11086 759..925 -
1622928784.31071-CDS-H-canaliculatus_F_contig11086:1197..13331622928784.31071-CDS-H-canaliculatus_F_contig11086:1197..1333Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11086 1198..1333 -
1696845562.9253762-CDS-H-canaliculatus_F_contig11086:1197..13331696845562.9253762-CDS-H-canaliculatus_F_contig11086:1197..1333Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11086 1198..1333 -
1622928784.3307323-CDS-H-canaliculatus_F_contig11086:2236..23351622928784.3307323-CDS-H-canaliculatus_F_contig11086:2236..2335Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11086 2237..2335 -
1696845562.9335473-CDS-H-canaliculatus_F_contig11086:2236..23351696845562.9335473-CDS-H-canaliculatus_F_contig11086:2236..2335Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11086 2237..2335 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig11086.985.1

>prot_H-canaliculatus_F_contig11086.985.1 ID=prot_H-canaliculatus_F_contig11086.985.1|Name=mRNA_H-canaliculatus_F_contig11086.985.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=188bp
AKQRAAVSALRMAKKGGGSAGSKRKKKKAAAAEGVGGTGTAAVRDKTTSS
AGDGFEDAGAPMMAGGGVGFVDVKTAKRGEVLQEGVIGTDAAREAKIEET
LRKMGVQSIGEVRAEKAAEEEGKSVAEQITSVFDLIPAETQLVMERVFIA
GFALCLVFLVGCGCAIGVEAYFLSTAGKLPPDLDNFIV
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mRNA from alignment at H-canaliculatus_F_contig11086:274..2335-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig11086.985.1 ID=mRNA_H-canaliculatus_F_contig11086.985.1|Name=mRNA_H-canaliculatus_F_contig11086.985.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=2062bp|location=Sequence derived from alignment at H-canaliculatus_F_contig11086:274..2335- (Hapterophycus canaliculatus Oshoro5f female)
GCGAAGCAAAGAGCAGCTGTGTCCGCCCTGAGGATGGCGAAGAAAGGCGG
GGGCTCCGCCGGATCGAAACGGAAGAAGAAGAAGGCGGCGGCAGCTGAGG
TACTCGGATGAACGAGAACGTATCGTTGTTTTCGTACCTGCACCTTAACG
ATGCCTTACCGTGCCATGCCAAACGGAACCCCTTCATCATGTACCATACC
AGGTATCATCATAGAAGGTACAGTATCAGTGTGCCCGAAAGGGCCTATCA
TAGAAAGCTTCCTGATGAAGCTGTACGATGAAGTTTTCTGATGAAGCACG
CAGTTTGATACTTGTGGGAGTTTGAGCTTCACGTAAAGAAGCGCGGCATT
CTTTCAGTAAGGAAGGTCTGCGACGGTAGTCGTGAACCACGTTTGCAGCG
AACGAATGCACACCGTTCCAAGTTTGAACTAGTTGAAAAACCATCCGGAA
GTCGAGGCGTGTGCGTTAAGACAGGGTTTGCTGTGGTCAAGTCTTGCCAT
GCTCTTTTGTGGCGCAATGAATGTAGATATTGAATCAGTGACACGCGTGC
TCTCGTACAATTTTGACGTCTACCCACGTTTTTTCTCACTGAAATTTACG
TTTTTTCTCACTGAAATTCAGCGGTCGGTACGTTGAGTTTGATAAGAGGT
CGGTGTGAACAAGACTGATGCCGCCTCCTTTGTACTGATGACAAGTCAAA
GCGTCTCTCGCACATCGTACATGATATTTCTGTTTCAGGGGCTGAACCCC
AATCCGATCTCCAAAGCCTACCCGAACATCATGCCGCTTGTAGGCGCCTT
TTGGAATGGACATGCACGTCGTATTTCTGCCGCTATTAATACGAGTACTG
TAGCTGTTCTGGATGGAGGAGCACAGCCCCACGCCTCACTATCGTCTCGG
ATGTGTCTCACACGACACGACACGACACGGCACACAGGCCGTCCCGGTCC
TTGCTGTTGCGGCTGACGTCGTTGGTGTTGATGATGTTGTTGGCGTTTTC
AGGGCGTGGGAGGCACAGGTACCGCTGCGGTTCGCGACAAGACAACCTCC
TCAGCAGGCGACGGCTTCGAAGACGCAGGCGCACCCATGATGGCAGGCGG
AGGGGTTGGATTCGTCGACGTGAAGACGGCAAAACGAGGTACGCAGAACG
AGGTAGGATGGAAGCGTTAGTCAAGAAGGGCCCTTTTTTTCCTCGATGCG
TGTCTTGTGTTTGTATGCTATGGTCGTTGTCGTTGTTTGTTGTTGTTGTT
GTTGTTGTCGTTGTCTTTGGTGGTCGTCGTCGTAGAAGTGTCGCGAATGA
GACCTCGTTTCCGCCCGGCGTCGCTGATGCGACAGCATGGCCACACCGGT
GTCATCGCCGATGCCATCGCTCGCCGCATCTATGCCTTTATCTCTCGTGT
GTGTTCCCAGGCGAGGTTCTTCAAGAGGGCGTCATCGGCACCGATGCAGC
ACGAGAGGCGAAGATCGAGGAGACCCTGAGAAAAATGGGCGTGCAAAGCA
TCGGGGAGGTTCGGGCCGAGAAGGCGGCCGAGGAGGAAGGAAAGAGCGTG
GCTGAGCAGATCACCTCTGTCTTCGACGTGAGTGTTCCAACAAAACAACA
AAACCACAAAACCCATAACTGGAACGATGGAGGTGATAAATGCTGACCCG
CCTGAGGTCGCGTTTTCATCTTATCGCGAGACTGAATTGGCAAACATGCC
TCTGTTGCAGCAGCAACCATGACTCCGTTTTCGCGCAAATCACGCCAAAA
AAGGGGTAAGCGGCATTCGACCCAACGTCTCCTGCAGGCTGCTACACGCT
GGTCGAGCGTCCTTGTGCCCTCCATGTCTCCGACCCAAAATTATCGACGT
CTTTCTCCGCCGTACACCGTCATTTCTCCAAAACACCGAAACAACAACAG
CTTATCCCCGCAGAGACGCAGCTGGTGATGGAGAGGGTGTTCATCGCGGG
GTTCGCGCTGTGCTTGGTGTTCTTGGTGGGGTGCGGGTGCGCCATCGGGG
TGGAGGCGTATTTCCTGTCCACAGCAGGAAAACTCCCGCCGGACCTCGAC
AACTTCATCGTC
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig11086:274..2335-

>mRNA_H-canaliculatus_F_contig11086.985.1 ID=mRNA_H-canaliculatus_F_contig11086.985.1|Name=mRNA_H-canaliculatus_F_contig11086.985.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1128bp|location=Sequence derived from alignment at H-canaliculatus_F_contig11086:274..2335- (Hapterophycus canaliculatus Oshoro5f female)
GCGAAGCAAAGAGCAGCTGTGTCCGCCCTGAGGATGGCGAAGAAAGGCGG
GGGCTCCGCCGGATCGAAACGGAAGAAGAAGAAGGCGGCGGCAGCTGAGG
CGAAGCAAAGAGCAGCTGTGTCCGCCCTGAGGATGGCGAAGAAAGGCGGG
GGCTCCGCCGGATCGAAACGGAAGAAGAAGAAGGCGGCGGCAGCTGAGGG
CGTGGGAGGCACAGGTACCGCTGCGGTTCGCGACAAGACAACCTCCTCAG
CAGGCGACGGCTTCGAAGACGCAGGCGCACCCATGATGGCAGGCGGAGGG
GTTGGATTCGTCGACGTGAAGACGGCAAAACGAGGGCGTGGGAGGCACAG
GTACCGCTGCGGTTCGCGACAAGACAACCTCCTCAGCAGGCGACGGCTTC
GAAGACGCAGGCGCACCCATGATGGCAGGCGGAGGGGTTGGATTCGTCGA
CGTGAAGACGGCAAAACGAGGCGAGGTTCTTCAAGAGGGCGTCATCGGCA
CCGATGCAGCACGAGAGGCGAAGATCGAGGAGACCCTGAGAAAAATGGGC
GTGCAAAGCATCGGGGAGGTTCGGGCCGAGAAGGCGGCCGAGGAGGAAGG
AAAGAGCGTGGCTGAGCAGATCACCTCTGTCTTCGACGCGAGGTTCTTCA
AGAGGGCGTCATCGGCACCGATGCAGCACGAGAGGCGAAGATCGAGGAGA
CCCTGAGAAAAATGGGCGTGCAAAGCATCGGGGAGGTTCGGGCCGAGAAG
GCGGCCGAGGAGGAAGGAAAGAGCGTGGCTGAGCAGATCACCTCTGTCTT
CGACCTTATCCCCGCAGAGACGCAGCTGGTGATGGAGAGGGTGTTCATCG
CGGGGTTCGCGCTGTGCTTGGTGTTCTTGGTGGGGTGCGGGTGCGCCATC
GGGGTGGAGGCGTATTTCCTGTCCACAGCAGGAAAACTCCCGCCGGACCT
CGACAACTTCATCGTCCTTATCCCCGCAGAGACGCAGCTGGTGATGGAGA
GGGTGTTCATCGCGGGGTTCGCGCTGTGCTTGGTGTTCTTGGTGGGGTGC
GGGTGCGCCATCGGGGTGGAGGCGTATTTCCTGTCCACAGCAGGAAAACT
CCCGCCGGACCTCGACAACTTCATCGTC
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