mRNA_H-canaliculatus_F_contig11067.969.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig11067.969.1
Unique NamemRNA_H-canaliculatus_F_contig11067.969.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
BLAST of mRNA_H-canaliculatus_F_contig11067.969.1 vs. uniprot
Match: A0A6H5KP25_9PHAE (PCI domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KP25_9PHAE)

HSP 1 Score: 461 bits (1187), Expect = 1.670e-153
Identity = 237/294 (80.61%), Postives = 264/294 (89.80%), Query Frame = 1
Query:    1 VQISADMGNFIHVNNYVLKAEHTPDLDAVVAAKLKAAAGLVHLDQKEYAKAARKFVDVSPELGSSFDGVVAPEDMAVYGGLCALATFSRDEMKRRVLENASFKNFLDLVPQVRELTNDFANSRYRSCLKYLAELKGDLQLDLHLHKHLDVLYKMIEDKCLMQYFSPYTSVRLGAMSEAFGMEVSEVESKVAALIISDQVSARIDSTNATLHAKHADQRAISCRKMHEMGKEYQRELRSMLVRMSCMEHDFVVRGGRGFTSLS---AGLLEEPSAPLGGXXXXXQDLAGPGLFGS 873
            ++ISADMGNFIHVNNYVL+AEHTPDLD+VV AKL+AAAGLVHLDQ++YAKAARKFVDV+PELGSSFD VVAPED+AVYGGLCALATFSR+EM++RVL+NASFKNFLDLVPQVRELTNDFANSRYRSCLKYLA+LKGDLQLDLHLH+HLD LYKM+EDKCLMQYFSPY+SVRLGAMSEAFGMEV E+E KVAAL+IS+Q+SARIDSTNATLHAKH +QR IS RKMHEMG+ YQRELR MLVRMSCMEHDFVVRG R  TS S    G+LEEPS+           +AG GLFG+
Sbjct:  238 IEISADMGNFIHVNNYVLRAEHTPDLDSVVKAKLRAAAGLVHLDQRDYAKAARKFVDVAPELGSSFDRVVAPEDIAVYGGLCALATFSREEMRQRVLDNASFKNFLDLVPQVRELTNDFANSRYRSCLKYLADLKGDLQLDLHLHRHLDTLYKMVEDKCLMQYFSPYSSVRLGAMSEAFGMEVPELEKKVAALVISNQISARIDSTNATLHAKHIEQRGISFRKMHEMGELYQRELRLMLVRMSCMEHDFVVRGSRSMTSSSLSTTGVLEEPSS-----------MAGLGLFGA 520          
BLAST of mRNA_H-canaliculatus_F_contig11067.969.1 vs. uniprot
Match: UPI000B8D17D8 (COP9 signalosome complex subunit 1 n=1 Tax=Carica papaya TaxID=3649 RepID=UPI000B8D17D8)

HSP 1 Score: 270 bits (689), Expect = 1.570e-82
Identity = 132/257 (51.36%), Postives = 189/257 (73.54%), Query Frame = 1
Query:    1 VQISADMGNFIHVNNYVLKAEHTPD-LDAVVAAKLKAAAGLVHLDQKEYAKAARKFVDVSPELGSSFDGVVAPEDMAVYGGLCALATFSRDEMKRRVLENASFKNFLDLVPQVRELTNDFANSRYRSCLKYLAELKGDLQLDLHLHKHLDVLYKMIEDKCLMQYFSPYTSVRLGAMSEAFGMEVSEVESKVAALIISDQVSARIDSTNATLHAKHADQRAISCRKMHEMGKEYQRELRSMLVRMSCMEHDFVVRGGR 768
            + +S +MG F HV++YV KAE TP+ LD++  AKL+ A+GL HL+ K+Y  AARKF+DV+PELGSS++ V+AP+D+A YGGLCALA+F R E+K +V++N +F+NFL+LVP+VREL NDF +S Y SCL YL  LK +L  D+HLH H++ LY  I +K L+QY  P+ SV L  M+ AF   VS +E ++ ALI  +Q+ ARIDS N  L+A+HADQR  + +++ + G E+ R++R+ML+R + + H+F VR  R
Sbjct:   56 ILVSIEMGQFTHVSSYVSKAEQTPEALDSITVAKLRCASGLAHLEAKKYKLAARKFLDVAPELGSSYNEVIAPQDIATYGGLCALASFDRAELKSKVIDNINFRNFLELVPEVRELINDFYSSHYASCLDYLGNLKANLLFDIHLHDHVETLYDQIRNKALIQYTHPFVSVDLRMMANAFKTSVSGLEKELEALITDNQIQARIDSHNKILYARHADQRNATFQRVLQTGSEFDRDVRAMLLRANLLRHEFNVRSSR 312          
BLAST of mRNA_H-canaliculatus_F_contig11067.969.1 vs. uniprot
Match: CSN1_ARATH (COP9 signalosome complex subunit 1 n=39 Tax=Brassicaceae TaxID=3700 RepID=CSN1_ARATH)

HSP 1 Score: 273 bits (697), Expect = 4.760e-82
Identity = 134/257 (52.14%), Postives = 192/257 (74.71%), Query Frame = 1
Query:    1 VQISADMGNFIHVNNYVLKAEHTPD-LDAVVAAKLKAAAGLVHLDQKEYAKAARKFVDVSPELGSSFDGVVAPEDMAVYGGLCALATFSRDEMKRRVLENASFKNFLDLVPQVRELTNDFANSRYRSCLKYLAELKGDLQLDLHLHKHLDVLYKMIEDKCLMQYFSPYTSVRLGAMSEAFGMEVSEVESKVAALIISDQVSARIDSTNATLHAKHADQRAISCRKMHEMGKEYQRELRSMLVRMSCMEHDFVVRGGR 768
            + +S +MG F HV +YV KAE  P+ L+ +V AKL+ A+GL HL+ K+Y  AARKF+DV+PELG+S++ V+AP+D+A YGGLCALA+F R E+K++V++N +F+NFL+LVP VREL NDF +SRY SCL+YLA LK +L LD+HLH H+D LY  I  K L+QY  P+ SV L  M++AF   VS +E ++ ALI  +Q+ ARIDS N  L+A+HADQR  + +K+ +MG E+ R++R+ML+R + ++H++  R  R
Sbjct:  183 ILVSIEMGQFTHVTSYVNKAEQNPETLEPMVNAKLRCASGLAHLELKKYKLAARKFLDVNPELGNSYNEVIAPQDIATYGGLCALASFDRSELKQKVIDNINFRNFLELVPDVRELINDFYSSRYASCLEYLASLKSNLLLDIHLHDHVDTLYDQIRKKALIQYTLPFVSVDLSRMADAFKTSVSGLEKELEALITDNQIQARIDSHNKILYARHADQRNATFQKVLQMGNEFDRDVRAMLLRANLLKHEYHARSAR 439          
BLAST of mRNA_H-canaliculatus_F_contig11067.969.1 vs. uniprot
Match: A9RVN7_PHYPA (Predicted protein n=3 Tax=Physcomitrium patens TaxID=3218 RepID=A9RVN7_PHYPA)

HSP 1 Score: 272 bits (695), Expect = 6.110e-82
Identity = 135/257 (52.53%), Postives = 193/257 (75.10%), Query Frame = 1
Query:    1 VQISADMGNFIHVNNYVLKAEHTPDL-DAVVAAKLKAAAGLVHLDQKEYAKAARKFVDVSPELGSSFDGVVAPEDMAVYGGLCALATFSRDEMKRRVLENASFKNFLDLVPQVRELTNDFANSRYRSCLKYLAELKGDLQLDLHLHKHLDVLYKMIEDKCLMQYFSPYTSVRLGAMSEAFGMEVSEVESKVAALIISDQVSARIDSTNATLHAKHADQRAISCRKMHEMGKEYQRELRSMLVRMSCMEHDFVVRGGR 768
            + +S ++G+F+HV+NYV KA+ TPD+ D VV AKLK AAGL HL+ K+Y  AARKFVD + ELGS++  V+AP+D+A YGGLCALA+F R E+K +V++N +F+NFL+LVP+VREL +DF  SRY SCL YL +LK +L LD+HL+ H++ LY+ I  K L+QY +P+ SV L  M+ AF   V+ +E ++AALI  +Q+ ARIDS N  L+A+HADQR  + +++ + G ++QRE R+ML+R + M  DFV++G R
Sbjct:  167 ILVSIELGHFVHVSNYVSKADQTPDVQDPVVLAKLKCAAGLAHLESKKYKLAARKFVDTNFELGSNYSDVIAPQDVATYGGLCALASFDRAELKSKVIDNINFRNFLELVPEVRELIHDFYASRYASCLGYLQKLKPNLLLDIHLYDHVETLYEQIRHKALIQYTNPFISVDLNTMASAFKTSVTGLEKELAALITENQIQARIDSHNKILYARHADQRNTTFQRVLQTGSDFQRETRAMLLRANLMRQDFVMKGNR 423          
BLAST of mRNA_H-canaliculatus_F_contig11067.969.1 vs. uniprot
Match: A0A0V0ID26_SOLCH (Putative COP9 signalosome complex subunit 1-like n=1 Tax=Solanum chacoense TaxID=4108 RepID=A0A0V0ID26_SOLCH)

HSP 1 Score: 266 bits (681), Expect = 1.650e-81
Identity = 130/257 (50.58%), Postives = 186/257 (72.37%), Query Frame = 1
Query:    1 VQISADMGNFIHVNNYVLKAEHTPD-LDAVVAAKLKAAAGLVHLDQKEYAKAARKFVDVSPELGSSFDGVVAPEDMAVYGGLCALATFSRDEMKRRVLENASFKNFLDLVPQVRELTNDFANSRYRSCLKYLAELKGDLQLDLHLHKHLDVLYKMIEDKCLMQYFSPYTSVRLGAMSEAFGMEVSEVESKVAALIISDQVSARIDSTNATLHAKHADQRAISCRKMHEMGKEYQRELRSMLVRMSCMEHDFVVRGGR 768
            + +S +MG F HV +YV KAE + D LDA+  AKL+ AAGL HL+ K+Y  AARKF++V PELG+++  V+AP+D A YGGLCALA+F R E+K +V++N +F+NFL+LVP++REL +DF  S Y SCL+YL  LK +L LD+HLH H++ LY  I  K L+QY  P+ SV L  M+ AF   V+ +E ++ ALI  +Q+ ARIDS N  L+A+HADQR  + +K+ + GKE+ R++RSML+R + ++HD++ R  R
Sbjct:   44 ILVSIEMGQFTHVTSYVSKAEQSQDALDAITVAKLRCAAGLAHLEAKKYKLAARKFLEVGPELGNNYTEVIAPQDAATYGGLCALASFDRAELKSKVIDNINFRNFLELVPEIRELIHDFYTSHYASCLEYLGNLKANLLLDIHLHDHVETLYDQIRSKALIQYTHPFVSVDLNMMANAFKTSVAGLEKELEALITDNQIQARIDSHNKILYARHADQRNATFQKVLQTGKEFDRDVRSMLLRANLLKHDYIARTSR 300          
BLAST of mRNA_H-canaliculatus_F_contig11067.969.1 vs. uniprot
Match: A0A1Y1IKT1_KLENI (PCI domain-containing protein n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1IKT1_KLENI)

HSP 1 Score: 268 bits (686), Expect = 1.430e-80
Identity = 134/258 (51.94%), Postives = 191/258 (74.03%), Query Frame = 1
Query:    1 VQISADMGNFIHVNNYVLKAEHTPD-LDAVVAAKLKAAAGLVHLDQKEYAKAARKFVDVSPELGSSFDGVVAPEDMAVYGGLCALATFSRDEMKRRVLENASFKNFLDLVPQVRELTNDFANSRYRSCLKYLAELKGDLQLDLHLHKHLDVLYKMIEDKCLMQYFSPYTSVRLGAMSEAFGMEVSEVESKVAALIISDQVSARIDSTNATLHAKHADQRAISCRKMHEMGKEYQRELRSMLVRMSCMEHDFVVRGGRG 771
            + +S ++G+F++V NYV KAE TPD  D V+  KLK AAGL HL+ K+Y  AARKFVDV+ ELG+ +  V+AP+D+A+YG LCALA+F R ++K +V++N SF+NFL+LVP +REL NDF  SRY SCL YL +LK DL LD+HL  H+D LY+ I  K L+QY +P+ SV L  M+ +F   V+ +E ++AALI+ +Q+ ARIDS N  L+A+HADQR  S +K  ++G +YQR+ +++L+R + M+HDFVV+  +G
Sbjct:  171 ILVSIELGHFVNVTNYVQKAEQTPDNTDPVIQGKLKCAAGLAHLENKKYKLAARKFVDVNFELGTQYKKVIAPQDVALYGALCALASFDRADLKSKVIDNISFRNFLELVPDIRELINDFYASRYASCLGYLQKLKPDLLLDVHLFDHVDTLYEQIRHKALIQYTTPFISVDLNRMAASFKTNVAGLEKELAALIMENQIQARIDSHNKILYARHADQRNTSFQKALQVGADYQRDTKALLLRANLMQHDFVVKPKKG 428          
BLAST of mRNA_H-canaliculatus_F_contig11067.969.1 vs. uniprot
Match: M1CNN0_SOLTU (Cop11 protein n=12 Tax=Solanaceae TaxID=4070 RepID=M1CNN0_SOLTU)

HSP 1 Score: 267 bits (683), Expect = 5.440e-80
Identity = 130/257 (50.58%), Postives = 187/257 (72.76%), Query Frame = 1
Query:    1 VQISADMGNFIHVNNYVLKAEHTPD-LDAVVAAKLKAAAGLVHLDQKEYAKAARKFVDVSPELGSSFDGVVAPEDMAVYGGLCALATFSRDEMKRRVLENASFKNFLDLVPQVRELTNDFANSRYRSCLKYLAELKGDLQLDLHLHKHLDVLYKMIEDKCLMQYFSPYTSVRLGAMSEAFGMEVSEVESKVAALIISDQVSARIDSTNATLHAKHADQRAISCRKMHEMGKEYQRELRSMLVRMSCMEHDFVVRGGR 768
            + +S +MG F HV +YV KAE + D LDA+  AKL+ AAGL HL+ K+Y  AARKF++V PELG+++  V+AP+D+A YGGLCALA+F R E+K +V++N +F+NFL+LVP++REL +DF  S Y SCL+YL  LK +L LD+HLH H++ LY  I  K L+QY  P+ SV L  M+ AF   V+ +E ++ ALI  +Q+ ARIDS N  L+A+HADQR  + +K+ + GKE+ R++RSML+R + ++HD++ R  R
Sbjct:  182 ILVSIEMGQFTHVTSYVSKAEQSQDALDAITVAKLRCAAGLAHLEAKKYKLAARKFLEVGPELGNNYTEVIAPQDVATYGGLCALASFDRAELKSKVIDNINFRNFLELVPEIRELIHDFYTSHYASCLEYLGNLKANLLLDIHLHDHVETLYDQIRSKALIQYTHPFVSVDLNMMANAFKTSVAGLEKELEALITDNQIQARIDSHNKILYARHADQRNATFQKVLQTGKEFDRDVRSMLLRANLLKHDYIARTSR 438          
BLAST of mRNA_H-canaliculatus_F_contig11067.969.1 vs. uniprot
Match: A0A0A0L4A8_CUCSA (PCI domain-containing protein n=12 Tax=Cucurbitaceae TaxID=3650 RepID=A0A0A0L4A8_CUCSA)

HSP 1 Score: 267 bits (682), Expect = 1.010e-79
Identity = 132/256 (51.56%), Postives = 186/256 (72.66%), Query Frame = 1
Query:    1 VQISADMGNFIHVNNYVLKAEHTPD-LDAVVAAKLKAAAGLVHLDQKEYAKAARKFVDVSPELGSSFDGVVAPEDMAVYGGLCALATFSRDEMKRRVLENASFKNFLDLVPQVRELTNDFANSRYRSCLKYLAELKGDLQLDLHLHKHLDVLYKMIEDKCLMQYFSPYTSVRLGAMSEAFGMEVSEVESKVAALIISDQVSARIDSTNATLHAKHADQRAISCRKMHEMGKEYQRELRSMLVRMSCMEHDFVVRGG 765
            + +S +MG F HV +YV KAE TP+ LDA+ +AKL+ AAGL HL+ K+Y  AARKF++  PELG+ ++ V+AP+D+A YGGLCALATF R E+K +V++N +F+NFL+LVP VREL NDF +S Y SCL YL  LK +L LD+HLH H++ LY  I  K L+QY  P+ SV L  M+ AF   V+ +E ++  LI ++Q+ ARIDS N  L+A+HADQR  + +++ + G E+ RE+RSML+R + ++HD+  RGG
Sbjct:  191 ILVSIEMGQFTHVTSYVSKAEQTPEALDAITSAKLRCAAGLAHLEAKKYKLAARKFLETGPELGNHYNEVIAPQDVATYGGLCALATFDRSELKSKVIDNVNFRNFLELVPVVRELINDFYSSHYASCLDYLGNLKPNLLLDIHLHDHVETLYDQIRHKALIQYTLPFVSVDLHMMANAFKTSVAGLEKELETLITNNQIQARIDSHNKILYARHADQRNATFQRVLQSGSEFDREVRSMLLRANLIKHDYNQRGG 446          
BLAST of mRNA_H-canaliculatus_F_contig11067.969.1 vs. uniprot
Match: A0A7J7DDA7_TRIWF (COP9 signalosome complex subunit 1 n=2 Tax=Tripterygium wilfordii TaxID=458696 RepID=A0A7J7DDA7_TRIWF)

HSP 1 Score: 266 bits (681), Expect = 1.110e-79
Identity = 133/257 (51.75%), Postives = 188/257 (73.15%), Query Frame = 1
Query:    1 VQISADMGNFIHVNNYVLKAEHTPD-LDAVVAAKLKAAAGLVHLDQKEYAKAARKFVDVSPELGSSFDGVVAPEDMAVYGGLCALATFSRDEMKRRVLENASFKNFLDLVPQVRELTNDFANSRYRSCLKYLAELKGDLQLDLHLHKHLDVLYKMIEDKCLMQYFSPYTSVRLGAMSEAFGMEVSEVESKVAALIISDQVSARIDSTNATLHAKHADQRAISCRKMHEMGKEYQRELRSMLVRMSCMEHDFVVRGGR 768
            + +S +MG F HV +YV KAE TP+ LD V AAKL+ AAGL HL+ K+Y  AARKF++V PELG+S++ V+A +D+A YGGLCALA+F R E+K +V++N SF+NFL+LVP+VREL NDF +S Y SCL YL  LK +L LD+HLH H++ LY +I +K L+QY  P+ SV L  M+ AF   VS +E ++ ALI  +Q+ ARIDS N  L+A+HADQR  + +++ + G E+ R++RSML+R + ++HD+  +  R
Sbjct:  183 ILVSIEMGQFTHVTSYVSKAEQTPEALDPVTAAKLRCAAGLSHLEAKKYKLAARKFLEVGPELGTSYNDVIAAQDVATYGGLCALASFDRMELKSKVIDNISFRNFLELVPEVRELINDFYSSHYASCLDYLGNLKANLLLDIHLHDHVETLYDLIRNKALIQYTHPFVSVDLCMMANAFKTSVSRLEKELEALITDNQIQARIDSHNKILYARHADQRNATFQRVLQTGNEFDRDVRSMLLRANLIKHDYNSKSSR 439          
BLAST of mRNA_H-canaliculatus_F_contig11067.969.1 vs. uniprot
Match: A0A453J7U5_AEGTS (PCI domain-containing protein n=3 Tax=Triticinae TaxID=1648030 RepID=A0A453J7U5_AEGTS)

HSP 1 Score: 262 bits (670), Expect = 1.190e-79
Identity = 130/251 (51.79%), Postives = 187/251 (74.50%), Query Frame = 1
Query:    1 VQISADMGNFIHVNNYVLKAEHTPD-LDAVVAAKLKAAAGLVHLDQKEYAKAARKFVDVSPELGSSFDGVVAPEDMAVYGGLCALATFSRDEMKRRVLENASFKNFLDLVPQVRELTNDFANSRYRSCLKYLAELKGDLQLDLHLHKHLDVLYKMIEDKCLMQYFSPYTSVRLGAMSEAFGMEVSEVESKVAALIISDQVSARIDSTNATLHAKHADQRAISCRKMHEMGKEYQRELRSMLVRMSCMEHDF 750
            + +S ++G F HV NYV KAE TPD LDAV+ AKL+AAAGL +L+ K+Y  AARKF++  PELGS++  V+AP+D+AVYG LCALA+F R E+K +V++N +F+NFL+LVP+VREL NDF  SRY SCL++L +LK +L LD+HL +HL  LY  I  K ++QY  P+ SV L  M+ AF   VS +E ++AALI  +++ ARIDS N  L+A+HADQR  + ++  + G E++R++++ML+R + ++HDF
Sbjct:   55 ILVSIELGQFAHVTNYVSKAEQTPDTLDAVIVAKLRAAAGLANLETKKYKLAARKFLETGPELGSNYSEVIAPQDVAVYGALCALASFDRSELKSKVIDNINFRNFLELVPEVRELVNDFYASRYGSCLEHLEKLKPNLLLDIHLREHLGTLYNDIRHKAIIQYTLPFISVDLNTMASAFKSSVSMLEKELAALITENKIQARIDSHNKILYARHADQRNATFQRALQTGNEFERDIKAMLLRANLIKHDF 305          
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig11067.969.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KP25_9PHAE1.670e-15380.61PCI domain-containing protein n=2 Tax=Ectocarpus T... [more]
UPI000B8D17D81.570e-8251.36COP9 signalosome complex subunit 1 n=1 Tax=Carica ... [more]
CSN1_ARATH4.760e-8252.14COP9 signalosome complex subunit 1 n=39 Tax=Brassi... [more]
A9RVN7_PHYPA6.110e-8252.53Predicted protein n=3 Tax=Physcomitrium patens Tax... [more]
A0A0V0ID26_SOLCH1.650e-8150.58Putative COP9 signalosome complex subunit 1-like n... [more]
A0A1Y1IKT1_KLENI1.430e-8051.94PCI domain-containing protein n=1 Tax=Klebsormidiu... [more]
M1CNN0_SOLTU5.440e-8050.58Cop11 protein n=12 Tax=Solanaceae TaxID=4070 RepID... [more]
A0A0A0L4A8_CUCSA1.010e-7951.56PCI domain-containing protein n=12 Tax=Cucurbitace... [more]
A0A7J7DDA7_TRIWF1.110e-7951.75COP9 signalosome complex subunit 1 n=2 Tax=Tripter... [more]
A0A453J7U5_AEGTS1.190e-7951.79PCI domain-containing protein n=3 Tax=Triticinae T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig11067contigH-canaliculatus_F_contig11067:266..4378 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score458.4
Seed ortholog evalue3.1e-126
Seed eggNOG ortholog2880.D8LM81
KEGG koko:K01265,ko:K12175
EggNOG free text desc.protein deneddylation
EggNOG OGsKOG0686@1,KOG0686@2759
EC3.4.11.18
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko01002,ko04121
Hectar predicted targeting categoryother localisation
Exons6
Model size1721
Cds size1077
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig11067.969.1prot_H-canaliculatus_F_contig11067.969.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig11067 284..3752 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928781.5515907-UTR-H-canaliculatus_F_contig11067:265..2831622928781.5515907-UTR-H-canaliculatus_F_contig11067:265..283Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig11067 266..283 +
1696845562.0101397-UTR-H-canaliculatus_F_contig11067:265..2831696845562.0101397-UTR-H-canaliculatus_F_contig11067:265..283Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig11067 266..283 +
1622928781.6261146-UTR-H-canaliculatus_F_contig11067:3752..43781622928781.6261146-UTR-H-canaliculatus_F_contig11067:3752..4378Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig11067 3753..4378 +
1696845562.0706897-UTR-H-canaliculatus_F_contig11067:3752..43781696845562.0706897-UTR-H-canaliculatus_F_contig11067:3752..4378Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig11067 3753..4378 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928781.5629349-CDS-H-canaliculatus_F_contig11067:283..4151622928781.5629349-CDS-H-canaliculatus_F_contig11067:283..415Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11067 284..415 +
1696845562.0201359-CDS-H-canaliculatus_F_contig11067:283..4151696845562.0201359-CDS-H-canaliculatus_F_contig11067:283..415Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11067 284..415 +
1622928781.5731392-CDS-H-canaliculatus_F_contig11067:950..11331622928781.5731392-CDS-H-canaliculatus_F_contig11067:950..1133Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11067 951..1133 +
1696845562.0280466-CDS-H-canaliculatus_F_contig11067:950..11331696845562.0280466-CDS-H-canaliculatus_F_contig11067:950..1133Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11067 951..1133 +
1622928781.5830097-CDS-H-canaliculatus_F_contig11067:1826..19781622928781.5830097-CDS-H-canaliculatus_F_contig11067:1826..1978Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11067 1827..1978 +
1696845562.0359929-CDS-H-canaliculatus_F_contig11067:1826..19781696845562.0359929-CDS-H-canaliculatus_F_contig11067:1826..1978Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11067 1827..1978 +
1622928781.5927331-CDS-H-canaliculatus_F_contig11067:2253..23141622928781.5927331-CDS-H-canaliculatus_F_contig11067:2253..2314Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11067 2254..2314 +
1696845562.0463102-CDS-H-canaliculatus_F_contig11067:2253..23141696845562.0463102-CDS-H-canaliculatus_F_contig11067:2253..2314Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11067 2254..2314 +
1622928781.6045148-CDS-H-canaliculatus_F_contig11067:2633..27591622928781.6045148-CDS-H-canaliculatus_F_contig11067:2633..2759Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11067 2634..2759 +
1696845562.0546515-CDS-H-canaliculatus_F_contig11067:2633..27591696845562.0546515-CDS-H-canaliculatus_F_contig11067:2633..2759Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11067 2634..2759 +
1622928781.6165855-CDS-H-canaliculatus_F_contig11067:3329..37521622928781.6165855-CDS-H-canaliculatus_F_contig11067:3329..3752Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11067 3330..3752 +
1696845562.0626638-CDS-H-canaliculatus_F_contig11067:3329..37521696845562.0626638-CDS-H-canaliculatus_F_contig11067:3329..3752Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11067 3330..3752 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig11067.969.1

>prot_H-canaliculatus_F_contig11067.969.1 ID=prot_H-canaliculatus_F_contig11067.969.1|Name=mRNA_H-canaliculatus_F_contig11067.969.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=359bp
MGNFIHVNNYVLKAEHTPDLDAVVAAKLKAAAGLVHLDQKEYAKAARKFV
DVSPELGSSFDGVVAPEDMAVYGGLCALATFSRDEMKRRVLENASFKNFL
DLVPQVRELTNDFANSRYRSCLKYLAELKGDLQLDLHLHKHLDVLYKMIE
DKCLMQYFSPYTSVRLGAMSEAFGMEVSEVESKVAALIISDQVSARIDST
NATLHAKHADQRAISCRKMHEMGKEYQRELRSMLVRMSCMEHDFVVRGGR
GFTSLSAGLLEEPSAPLGGGGGGGQDLAGPGLFGSGTGGGGGGGGGGGGG
AEAETEAAGEAAAGAAAGAAAGAAATAAEGGGSGVLVAAAAAGAGETQEV
RRTRVQGF*
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mRNA from alignment at H-canaliculatus_F_contig11067:266..4378+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig11067.969.1 ID=mRNA_H-canaliculatus_F_contig11067.969.1|Name=mRNA_H-canaliculatus_F_contig11067.969.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=4113bp|location=Sequence derived from alignment at H-canaliculatus_F_contig11067:266..4378+ (Hapterophycus canaliculatus Oshoro5f female)
GTGCAGATCAGCGCCGACATGGGGAACTTTATCCACGTGAACAACTACGT GTTGAAGGCGGAGCACACCCCTGATCTTGACGCCGTGGTCGCGGCCAAGC TCAAAGCCGCGGCGGGCCTCGTTCACCTCGACCAGAAGGAGTACGCCAAG GTGGGCTTGAGCGTGGGCGCGTTGATTGTCCTACCGGATGGTCGACGTGT TTTCGGTCGTTTTTTCCTCTCTTGTCTTGCCTTGCCTTCTCTTCCGGCCG CTGCTGGAGCCCCTACCTGCAGTAGTAGACGATCTCGGAGGATTGATGTG TGTGTGTGTGTGTGTGTGTGTGTGGAGGCCGTTCGAGGCCATCGCTAGTC GGAAGCGCGTTCGAAATACTTCCACTTAGCAGGCCATCGGTGCGACAGTC CCCCTCTTCCGTGTGCCTCCAGTCGCGTCAAACTTCATACGTACCCAGCT CGGCCTGTCCACCCGCAAGTTCGCGAGAACTCAAGCGTGGTGGGGGCTGT TCGAAAGCGCAAGAGCGCTTGCCTCGTCTGTCACGAGTTCGTGGGCGATC GAAAAGGCGGCTCGAATCGGTGCGCTTTCGTTTTCCCCTCCCACCCTCTC ACCTTCCTTCTCCCCTCTTGTCTCGCCTCCTCTTACTCCTCCTGCCCCTA TCTCGACCTACCGATCGCCGTACTCGCCCACGTAGGCCGCGCGCAAGTTC GTAGACGTATCGCCGGAGCTCGGGTCTAGCTTCGATGGGGTTGTGGCGCC TGAAGACATGGCGGTGTACGGGGGTCTGTGCGCGCTGGCGACGTTCTCGC GGGACGAGATGAAGCGAAGGGTGCTGGAGAACGCCTCCTTCAAGAACTTC CTCGACCTCGTGCCGCAGGTGCAGCGGTGGGCAGTAGCGGTAGCAGCGGC GGTAACGTCGCACGCGGCACGAGATTGATGCAAGGTGTACGGTATGATTT TTGCCACAGCAGTGAGAACGGTAGCAGCGGCCAACAACGTCAGTGGGGGC ATCGCGGACGGCAATAAGTATCCATTGGTAGATACGTGACCGTGAAGACA AAAGACGCGGCTGCTCCCTATCCTGCCGCTACAGGCCTACAACGACCACC ACTGCCTCCACCACACCACGGCCGAATCGGTACCCGCCGCATCCGATCGT CTGACCCCGCCCTGCGCGTCCCCTGGCCTTCTCGTCGGCTGTTGTCGGTA TGGCTGGGCGCGTGGAGCGCACCCGGGGTAGGGGACTGATGGCCGTCTCG GCCGGCAGGACGGCTGGACACCGCTCGTCCCGCGCCGCCGTATTTGTCTC TGTGGCCGCGGCGTTCTTGTGTCGTGCGTCCCGTCGGTCGCTTGTCCCCT GGTTCGCTTGTCCGTTGGGTTGCAGGCTCGCGTACTCTTCTTGCCGGCTT GGTTTTTTCTACGTAGTTGCTTGTTCTCGTCTTCGAGCTTGCACGCCTGC GCCTGCTCGCTCGTTGTCTTCTCGCAAGCTTGTCCGGGCGGAGAGACCCA ATAGAACAAGCCCGGCCATAGACCAAACGCAACCCAACCCCATCCCGTGC CTGAAACCCAGGTGAGGGAGCTTACGAACGACTTCGCCAATAGCCGCTAC CGTTCCTGCCTGAAGTACTTGGCCGAGCTCAAGGGGGACTTGCAGCTCGA CCTGCACCTGCACAAACACCTGGACGTCCTGTACAAGATGATCGAAGACA AGTGCTTGATGCAGTGAGTCGAGCGCTCGTCACCGAAGAACCTGTGCTCT TGTTGCTGCTGCTGCTGCTGGTGGTGTTCTTGTTGTTTGACGCTTTTACG CCTGCCTTTCATCTTGAACGCGCTGATTTCTCTCCGCCCTCGTGGTCTCC GCGCTATCTCTTTGCCGATTGCCTCATCGCCCCTCTCTTTTCCGCGCACA ACTGCACGACTGCGCGACTCGTGATGACGAATGGGATTGTGATCGGTCGC TTTGGAACGCGGCTTCCCCGACGCGGGCGGTGTCGCAGGTACTTCTCTCC ATACACCTCGGTGCGGCTCGGGGCCATGTCGGAGGCGTTTGGGATGGAGG TGAGTCGTTTCCGCTGGTGTACAGGGTACGCGGGGGTTCCCCCCTTGTTA GTGCCTACGTGGTACACCCTTAGTAGGAGCTCCTTAAATAATCTTGAGAT CTAATTCTGCTTTTCTAGCCAGCCAAGTCCCCCTCGCTAGTCAAAATCCG TGCCGCCGCGGGGAATCGATGTCTTCGTCGTTGTCACTGGCCGCTGTTGC GAACCGCCCACTATTTTACGCCTTCTTTCCTGGTCGTGTGGTCGTTCGTT TACGTGGTGAGTTCCCCTGTGTATCTGTGTGTGTTGTTGGTCCTGCTTGT CCGCTCCACTATCAAAAGGTGTCCGAGGTGGAGAGCAAGGTGGCCGCGCT CATCATTTCAGACCAGGTCTCTGCTCGCATCGACAGCACGAACGCGACCT TGCACGCCAAGCACGCCGACCAGCGAGCTATCAGCTGCCGAAAGGTGAGT CTGTGGGCCTGGTGGGGGTGAGCAATCGTTGGCTCGCCGTCTTTGTCTTT GGGTTGTTCGGGTTCTATCAAGACGCGCGACGGCGTGCTTGCCTGCCCGC GCCCTTCTTTTTCGTCGGGACTCGCTGCAGTCGTTGTTGTGAGTGGTGTG CGTCCATACGACCGCCACATCACCGAGAAGCGCGTGTGACGTGTACGGTA GGCGGAGAGTACGTTGTCTGGATCGTTCTGTCGTGGCGCAGTCGATCGGA CGCCGATGACAACCACGTCGCCAGGGGGGGTCGCCGATGCTAGAGCAGAC GATGCTGCTGCTGCTGCTGCTGCTGCAGCTGCTGCTGTCTACGCGATTCA ACCTTTGCCGTCAATTATCGTCTAGGAGGTTTTTTTCAGCTCGCATCGAC CTTGCTTGTGAACTCTTACAACCATAAGCCTAAGTTCCTTCTGGAGCTCC CACACGCACGACTTCAACCAGTCGTGTCGTGCCATCAAATAAGCATTTCC GAGGCACTCCGCATCCGGAACGTGTTGAAACTGACGCGTGGCGGCACGGC GACGACGACGGCAGATGCACGAGATGGGAAAGGAGTACCAGAGGGAACTG CGGTCGATGCTCGTGCGGATGAGCTGCATGGAGCACGACTTCGTCGTCCG GGGGGGTCGTGGCTTCACCTCCCTTTCTGCCGGACTGCTCGAGGAGCCGT CGGCACCGCTGGGAGGGGGAGGAGGAGGAGGGCAGGACCTTGCCGGACCG GGGTTGTTTGGCTCGGGGACCGGCGGCGGCGGCGGCGGCGGGGGCGGGGG TGGCGGGGGCGCTGAAGCCGAGACTGAGGCAGCAGGGGAGGCGGCGGCGG GGGCGGCAGCGGGGGCGGCAGCGGGAGCGGCGGCGACCGCGGCAGAGGGG GGAGGGAGTGGCGTACTTGTTGCTGCTGCCGCTGCTGGGGCTGGCGAGAC GCAGGAGGTGCGTCGGACTCGCGTTCAAGGTTTCTAGTTTTGCTGGAGCT TGGGTCGCGCTTGGACGGGGGTTTGCTGGGACAGGGGGTTGGGAGAGTTG GTTGGATTGGAGGCTTGAGTGAAACCAGGAAAGCGAGAAGTCTCTTGTCT TTCGGTACGTGGTAGATAAAGATTGCCTTGTACCTTGTTTGCAAAGCGCC ATTTTTGGAACGAGCAGGGGCGAGTGACGCACTTATGTGTTGCTTGGTTT AGTCATCAGACCATTGGCCGTGCATCCCTCTTCCTTTTCTTGGCTGGGGT ACCTCCAACAGGAGTCTCACGCGCTCTTCACGTTTCTGCCGCAACGGTAA ACGGAAACCTGTTCCTGAATCGTAGCTGCTTCCTGCTCGGCATCCTTTGG CCACCATCTGTGTCGCAGCGTAGTTATCGTTTTCCCACTACTGTTTCAGT TCCCATAAATGGACATGTTGCATTCCCTCAAGTCCCCGTATCTCTAGGAG CGCCCCCTTTCTTCCCTATACCATTGACGTCCTTCAAGGGGATGCAACCG ACTTTCTTGTGCCATCTTACATGGCGGCGAGAGAGATATCAGCGCGCTGG GCGACGCCTCCCGAAAGAAAAGGAAAAAGAAAAACGAAGCAGCAGCGGCA GCAGCGGAAACAG
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig11067:266..4378+

>mRNA_H-canaliculatus_F_contig11067.969.1 ID=mRNA_H-canaliculatus_F_contig11067.969.1|Name=mRNA_H-canaliculatus_F_contig11067.969.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=2154bp|location=Sequence derived from alignment at H-canaliculatus_F_contig11067:266..4378+ (Hapterophycus canaliculatus Oshoro5f female)
ATGGGGAACTTTATCCACGTGAACAACTACGTGTTGAAGGCGGAGCACAC
CCCTGATCTTGACGCCGTGGTCGCGGCCAAGCTCAAAGCCGCGGCGGGCC
TCGTTCACCTCGACCAGAAGGAGTACGCCAAGATGGGGAACTTTATCCAC
GTGAACAACTACGTGTTGAAGGCGGAGCACACCCCTGATCTTGACGCCGT
GGTCGCGGCCAAGCTCAAAGCCGCGGCGGGCCTCGTTCACCTCGACCAGA
AGGAGTACGCCAAGGCCGCGCGCAAGTTCGTAGACGTATCGCCGGAGCTC
GGGTCTAGCTTCGATGGGGTTGTGGCGCCTGAAGACATGGCGGTGTACGG
GGGTCTGTGCGCGCTGGCGACGTTCTCGCGGGACGAGATGAAGCGAAGGG
TGCTGGAGAACGCCTCCTTCAAGAACTTCCTCGACCTCGTGCCGCAGGCC
GCGCGCAAGTTCGTAGACGTATCGCCGGAGCTCGGGTCTAGCTTCGATGG
GGTTGTGGCGCCTGAAGACATGGCGGTGTACGGGGGTCTGTGCGCGCTGG
CGACGTTCTCGCGGGACGAGATGAAGCGAAGGGTGCTGGAGAACGCCTCC
TTCAAGAACTTCCTCGACCTCGTGCCGCAGGTGAGGGAGCTTACGAACGA
CTTCGCCAATAGCCGCTACCGTTCCTGCCTGAAGTACTTGGCCGAGCTCA
AGGGGGACTTGCAGCTCGACCTGCACCTGCACAAACACCTGGACGTCCTG
TACAAGATGATCGAAGACAAGTGCTTGATGCAGTGAGGGAGCTTACGAAC
GACTTCGCCAATAGCCGCTACCGTTCCTGCCTGAAGTACTTGGCCGAGCT
CAAGGGGGACTTGCAGCTCGACCTGCACCTGCACAAACACCTGGACGTCC
TGTACAAGATGATCGAAGACAAGTGCTTGATGCAGTACTTCTCTCCATAC
ACCTCGGTGCGGCTCGGGGCCATGTCGGAGGCGTTTGGGATGGAGGTACT
TCTCTCCATACACCTCGGTGCGGCTCGGGGCCATGTCGGAGGCGTTTGGG
ATGGAGGTGTCCGAGGTGGAGAGCAAGGTGGCCGCGCTCATCATTTCAGA
CCAGGTCTCTGCTCGCATCGACAGCACGAACGCGACCTTGCACGCCAAGC
ACGCCGACCAGCGAGCTATCAGCTGCCGAAAGGTGTCCGAGGTGGAGAGC
AAGGTGGCCGCGCTCATCATTTCAGACCAGGTCTCTGCTCGCATCGACAG
CACGAACGCGACCTTGCACGCCAAGCACGCCGACCAGCGAGCTATCAGCT
GCCGAAAGATGCACGAGATGGGAAAGGAGTACCAGAGGGAACTGCGGTCG
ATGCTCGTGCGGATGAGCTGCATGGAGCACGACTTCGTCGTCCGGGGGGG
TCGTGGCTTCACCTCCCTTTCTGCCGGACTGCTCGAGGAGCCGTCGGCAC
CGCTGGGAGGGGGAGGAGGAGGAGGGCAGGACCTTGCCGGACCGGGGTTG
TTTGGCTCGGGGACCGGCGGCGGCGGCGGCGGCGGGGGCGGGGGTGGCGG
GGGCGCTGAAGCCGAGACTGAGGCAGCAGGGGAGGCGGCGGCGGGGGCGG
CAGCGGGGGCGGCAGCGGGAGCGGCGGCGACCGCGGCAGAGGGGGGAGGG
AGTGGCGTACTTGTTGCTGCTGCCGCTGCTGGGGCTGGCGAGACGCAGGA
GGTGCGTCGGACTCGCGTTCAAGGTTTCTAGATGCACGAGATGGGAAAGG
AGTACCAGAGGGAACTGCGGTCGATGCTCGTGCGGATGAGCTGCATGGAG
CACGACTTCGTCGTCCGGGGGGGTCGTGGCTTCACCTCCCTTTCTGCCGG
ACTGCTCGAGGAGCCGTCGGCACCGCTGGGAGGGGGAGGAGGAGGAGGGC
AGGACCTTGCCGGACCGGGGTTGTTTGGCTCGGGGACCGGCGGCGGCGGC
GGCGGCGGGGGCGGGGGTGGCGGGGGCGCTGAAGCCGAGACTGAGGCAGC
AGGGGAGGCGGCGGCGGGGGCGGCAGCGGGGGCGGCAGCGGGAGCGGCGG
CGACCGCGGCAGAGGGGGGAGGGAGTGGCGTACTTGTTGCTGCTGCCGCT
GCTGGGGCTGGCGAGACGCAGGAGGTGCGTCGGACTCGCGTTCAAGGTTT
CTAG
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