mRNA_H-canaliculatus_F_contig11050.961.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig11050.961.1
Unique NamemRNA_H-canaliculatus_F_contig11050.961.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig11050.961.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig11050contigH-canaliculatus_F_contig11050:3162..3619 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size459
Cds size456
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928780.7756333-CDS-H-canaliculatus_F_contig11050:3161..36171622928780.7756333-CDS-H-canaliculatus_F_contig11050:3161..3617Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11050 3162..3617 +
1696845561.5307927-CDS-H-canaliculatus_F_contig11050:3161..36171696845561.5307927-CDS-H-canaliculatus_F_contig11050:3161..3617Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11050 3162..3617 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig11050.961.1prot_H-canaliculatus_F_contig11050.961.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig11050 3162..3617 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig11050.961.1

>prot_H-canaliculatus_F_contig11050.961.1 ID=prot_H-canaliculatus_F_contig11050.961.1|Name=mRNA_H-canaliculatus_F_contig11050.961.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=152bp
AAAAEAGAVVAARLPVVAAAPGSGTPVGGAEEEDTLRGGDAMLPAASLVG
WWSGIPELAETRAGAGMGVGAAAAVAAESAGEAAAALVAVPAAATVAAAA
EDTVVVSASPPPLPLLALDVSIAAAAAAAAPCPSPIPLFSLSSSPSGLAL
VL
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mRNA from alignment at H-canaliculatus_F_contig11050:3162..3619+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig11050.961.1 ID=mRNA_H-canaliculatus_F_contig11050.961.1|Name=mRNA_H-canaliculatus_F_contig11050.961.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=458bp|location=Sequence derived from alignment at H-canaliculatus_F_contig11050:3162..3619+ (Hapterophycus canaliculatus Oshoro5f female)
GCAGCAGCGGCGGAGGCAGGCGCGGTGGTGGCAGCGCGACTGCCCGTCGT
CGCAGCAGCGCCCGGGTCGGGAACGCCGGTGGGAGGAGCGGAGGAAGAAG
ACACGCTGAGGGGAGGGGACGCGATGCTCCCCGCTGCTTCCCTCGTCGGC
TGGTGGTCTGGCATACCAGAGCTTGCGGAAACGAGAGCGGGAGCGGGAAT
GGGAGTGGGGGCGGCAGCGGCGGTGGCGGCGGAATCCGCCGGAGAAGCAG
CAGCAGCGCTGGTAGCAGTACCGGCAGCAGCAACGGTAGCAGCAGCAGCT
GAAGATACGGTGGTCGTATCAGCGTCCCCGCCGCCACTGCCGCTGCTGGC
GCTCGACGTCTCTATTGCCGCCGCCGCCGCAGCTGCCGCTCCGTGTCCGT
CACCCATCCCCTTGTTCTCCTTATCCTCCTCCCCCTCCGGCCTGGCTCTT
GTTTTGCC
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig11050:3162..3619+

>mRNA_H-canaliculatus_F_contig11050.961.1 ID=mRNA_H-canaliculatus_F_contig11050.961.1|Name=mRNA_H-canaliculatus_F_contig11050.961.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=912bp|location=Sequence derived from alignment at H-canaliculatus_F_contig11050:3162..3619+ (Hapterophycus canaliculatus Oshoro5f female)
GCAGCAGCGGCGGAGGCAGGCGCGGTGGTGGCAGCGCGACTGCCCGTCGT
CGCAGCAGCGCCCGGGTCGGGAACGCCGGTGGGAGGAGCGGAGGAAGAAG
ACACGCTGAGGGGAGGGGACGCGATGCTCCCCGCTGCTTCCCTCGTCGGC
TGGTGGTCTGGCATACCAGAGCTTGCGGAAACGAGAGCGGGAGCGGGAAT
GGGAGTGGGGGCGGCAGCGGCGGTGGCGGCGGAATCCGCCGGAGAAGCAG
CAGCAGCGCTGGTAGCAGTACCGGCAGCAGCAACGGTAGCAGCAGCAGCT
GAAGATACGGTGGTCGTATCAGCGTCCCCGCCGCCACTGCCGCTGCTGGC
GCTCGACGTCTCTATTGCCGCCGCCGCCGCAGCTGCCGCTCCGTGTCCGT
CACCCATCCCCTTGTTCTCCTTATCCTCCTCCCCCTCCGGCCTGGCTCTT
GTTTTGGCAGCAGCGGCGGAGGCAGGCGCGGTGGTGGCAGCGCGACTGCC
CGTCGTCGCAGCAGCGCCCGGGTCGGGAACGCCGGTGGGAGGAGCGGAGG
AAGAAGACACGCTGAGGGGAGGGGACGCGATGCTCCCCGCTGCTTCCCTC
GTCGGCTGGTGGTCTGGCATACCAGAGCTTGCGGAAACGAGAGCGGGAGC
GGGAATGGGAGTGGGGGCGGCAGCGGCGGTGGCGGCGGAATCCGCCGGAG
AAGCAGCAGCAGCGCTGGTAGCAGTACCGGCAGCAGCAACGGTAGCAGCA
GCAGCTGAAGATACGGTGGTCGTATCAGCGTCCCCGCCGCCACTGCCGCT
GCTGGCGCTCGACGTCTCTATTGCCGCCGCCGCCGCAGCTGCCGCTCCGT
GTCCGTCACCCATCCCCTTGTTCTCCTTATCCTCCTCCCCCTCCGGCCTG
GCTCTTGTTTTG
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