mRNA_H-canaliculatus_F_contig1105.958.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig1105.958.1
Unique NamemRNA_H-canaliculatus_F_contig1105.958.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig1105.958.1 vs. uniprot
Match: D7G386_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G386_ECTSI)

HSP 1 Score: 167 bits (422), Expect = 2.210e-49
Identity = 81/114 (71.05%), Postives = 95/114 (83.33%), Query Frame = 1 
Query:  223 GSISAPSPAKGRAPTVPGHKTLRLRPRVYEVPTLGYLCVQMLAENSDRIVDLRGIGEQAARQLLREIMGRQKLTYPLAKVFMDCGDDELSSALASLNLWDAIPAGRQGRHSRHL 564
            GSI +P+       T   H+ ++L PRVY+ PTL Y CVQ+LAE++D+IVDLRG+G+  ARQLL EIMGRQKLTYPLAKVFM+CGDDELSSA+ASLNLWDAIPAGRQGRHSRHL
Sbjct:   66 GSIPSPAAPVAEVRTA-SHRIMKLAPRVYQAPTLRYCCVQVLAEHADKIVDLRGVGQDTARQLLEEIMGRQKLTYPLAKVFMNCGDDELSSAIASLNLWDAIPAGRQGRHSRHL 178
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BLAST of mRNA_H-canaliculatus_F_contig1105.958.1 vs. uniprot
Match: A0A836C951_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C951_9STRA)

HSP 1 Score: 84.0 bits (206), Expect = 2.420e-17
Identity = 40/90 (44.44%), Postives = 62/90 (68.89%), Query Frame = 1 
Query:  271 PGHKTLRLRPRVYEVPTLGYLCVQMLAENSDRIVDLRGIGEQAARQLLREIMGRQKLTYPLAKVFMDCGDDELSSALASLNLWDAIPAGR 540
            P H+T+ ++ +   VP+L  + +  LA++ + I D+  + E  A QLL EIM RQKLT+ LAKVFM+CG D++  A+ SLNL++A+P G+
Sbjct:   42 PTHRTITVQMKCAAVPSLTDMAISKLADHCESITDISCLPEMLAVQLLSEIMRRQKLTFALAKVFMNCGHDDICRAMESLNLFNAVPVGK 131
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BLAST of mRNA_H-canaliculatus_F_contig1105.958.1 vs. uniprot
Match: W7TNS6_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TNS6_9STRA)

HSP 1 Score: 76.6 bits (187), Expect = 4.530e-14
Identity = 40/97 (41.24%), Postives = 61/97 (62.89%), Query Frame = 1 
Query:  265 TVPGHKTLRLRP-----RVYEVPTLGYLCVQMLAENSDRIVDLRGIGEQAARQLLREIMGRQKLTYPLAKVFMDCGDDELSSALASLNLWDAIPAGR 540
            T P H+TL L       R +  P L +LC+  +A+N   +V + G+ E+   ++LREI+ R KL Y L +VF++ G +ELS A++SLNL+DA+  GR
Sbjct:   80 TSPTHRTLPLNEAVPSTRAHTPPPLTHLCMATIADNCSGLVSVNGLAEELCIRILREILLRGKLDYRLCRVFIESGHEELSKAVSSLNLFDALGCGR 176
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BLAST of mRNA_H-canaliculatus_F_contig1105.958.1 vs. uniprot
Match: A0A7S2D6D4_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2D6D4_9STRA)

HSP 1 Score: 71.6 bits (174), Expect = 4.580e-13
Identity = 41/91 (45.05%), Postives = 57/91 (62.64%), Query Frame = 1 
Query:  262 PTVPGHKTLRLRPRVYEVPTLGYLCVQMLAENSDRIVDLRGIGEQAARQLLREIMGRQKLTYPLAKVFMDCGDDE-LSSALASLNLWDAIP 531
            P  P H T ++  + YEVP+L  LC++ LA+NSD IVDL  I E++   LL +IM RQKLT PLA+VF+   +   L   +  L+L+ A P
Sbjct:    2 PYAPRHTTTKVAVK-YEVPSLSGLCIKFLADNSDSIVDLSNIDERSGVMLLMQIMRRQKLTVPLARVFIRSFEGTALGEGVKGLDLYAATP 91
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BLAST of mRNA_H-canaliculatus_F_contig1105.958.1 vs. uniprot
Match: A0A8J5XKY4_DIALT (Uncharacterized protein n=1 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J5XKY4_DIALT)

HSP 1 Score: 63.9 bits (154), Expect = 6.130e-10
Identity = 36/91 (39.56%), Postives = 51/91 (56.04%), Query Frame = 1 
Query:  292 LRPRVYEVPTLGYLCVQMLAENSDRIVDLRGIGEQA-ARQLLREIMGRQKLTYPLAKVFMDCGDDELSSALASLNLWDAIPAGRQGRHSRH 561
            L+ R   VP L  LC+  +A   + +VDLR + EQ+    LL  I+   KL + LA+VF  CG +E+  AL + +L DA+P     R SRH
Sbjct:   21 LQRRDSRVPKLVDLCLDRMASRLESVVDLRPVKEQSLCMALLHRIISNGKLDFRLARVFQQCGHEEIEQALMTADLLDALPGPMDVRASRH 111
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1105.958.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D7G386_ECTSI2.210e-4971.05Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A836C951_9STRA2.420e-1744.44Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
W7TNS6_9STRA4.530e-1441.24Uncharacterized protein n=1 Tax=Nannochloropsis ga... [more]
A0A7S2D6D4_9STRA4.580e-1345.05Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A8J5XKY4_DIALT6.130e-1039.56Uncharacterized protein n=1 Tax=Diacronema lutheri... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig1105contigH-canaliculatus_F_contig1105:7329..10659 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-03_004930.1
Exons3
Model size567
Cds size567
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig1105.958.1prot_H-canaliculatus_F_contig1105.958.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig1105 7329..10659 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928780.462166-CDS-H-canaliculatus_F_contig1105:7328..76631622928780.462166-CDS-H-canaliculatus_F_contig1105:7328..7663Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1105 7329..7663 +
1696845561.4662273-CDS-H-canaliculatus_F_contig1105:7328..76631696845561.4662273-CDS-H-canaliculatus_F_contig1105:7328..7663Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1105 7329..7663 +
1622928780.5672405-CDS-H-canaliculatus_F_contig1105:8350..85091622928780.5672405-CDS-H-canaliculatus_F_contig1105:8350..8509Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1105 8351..8509 +
1696845561.4773982-CDS-H-canaliculatus_F_contig1105:8350..85091696845561.4773982-CDS-H-canaliculatus_F_contig1105:8350..8509Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1105 8351..8509 +
1622928780.5789425-CDS-H-canaliculatus_F_contig1105:10586..106591622928780.5789425-CDS-H-canaliculatus_F_contig1105:10586..10659Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1105 10587..10659 +
1696845561.4897566-CDS-H-canaliculatus_F_contig1105:10586..106591696845561.4897566-CDS-H-canaliculatus_F_contig1105:10586..10659Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1105 10587..10659 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig1105.958.1

>prot_H-canaliculatus_F_contig1105.958.1 ID=prot_H-canaliculatus_F_contig1105.958.1|Name=mRNA_H-canaliculatus_F_contig1105.958.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=189bp
MVVAVGATEATGPPSPSSSTASLSSTATSRGAAASKIAAEARGKKDDQGS
WNAPMSMPMATSTSVSPGRRRKPGGSISAPSPAKGRAPTVPGHKTLRLRP
RVYEVPTLGYLCVQMLAENSDRIVDLRGIGEQAARQLLREIMGRQKLTYP
LAKVFMDCGDDELSSALASLNLWDAIPAGRQGRHSRHL*
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mRNA from alignment at H-canaliculatus_F_contig1105:7329..10659+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig1105.958.1 ID=mRNA_H-canaliculatus_F_contig1105.958.1|Name=mRNA_H-canaliculatus_F_contig1105.958.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=3331bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1105:7329..10659+ (Hapterophycus canaliculatus Oshoro5f female)
ATGGTCGTTGCCGTTGGTGCCACAGAAGCGACTGGACCACCGTCTCCGTC
TTCCTCTACCGCGTCGTTATCGTCGACAGCGACGTCAAGGGGCGCCGCAG
CATCGAAGATCGCGGCAGAAGCAAGAGGAAAAAAAGACGATCAAGGTTCT
TGGAATGCCCCGATGTCGATGCCGATGGCGACATCGACCTCGGTCTCGCC
CGGAAGACGACGAAAACCGGGCGGCTCTATCTCCGCTCCCTCTCCGGCCA
AGGGGCGAGCACCAACAGTGCCGGGGCACAAGACATTGAGGCTTAGGCCG
AGGGTGTACGAGGTCCCGACTCTGGGGTATCTCTGGTGAGTGTGAGGCAG
AGCTCCGACAAGATTACGGTGGAAGGGCCAAGCGTGTAGTCATGGTGGCT
GGTTGTGATAGTGGTGATGGTCGTGGTGTTGACGATCGGGTTGCGGAACG
CTTCGGGCTGATGCAAACGATACGCTGTGCTGACGCTCGCATGGCGGATC
TGGACGCTATGAAGGCGTTTGGCACGGAGATCGGAGGACAAGTCGCTGTT
ATCCCAGCGCCATTCTCTACGCGAGAGGGGTTCAACCGACGAACATCGAC
CCCGCAAAACAACACAATCCCATGGTTCTTCTCTTCTCAGCAACGATGTA
GTGAGAGTAGCCGGGCTGTGCTGCTGTGTTGTTTTGTGGGTGCACGTCTC
GATGACTCCCATGGGCCCGCTGTACGACCGCATTGAGTCCAATGGAACAA
CAAGCAAAACGTCTTCTGTTGCGTGGGTGGCTAGGAATTTGCGGCCGTGG
ATGTGATAGCTCGCACCTCTCCTCCCTACTGAGGAGAGAAAGCACTCCCG
TTTTGAGCGGACGGTAAACATGAGCGTACGAGTGCGTTGGTCGCTCATGT
CACGTGCTTAGTGGTCTAGTCTCCCCCGCTGGATCGCTTTTGTCCACTTG
CTCTCTCTCCTCTTGCCCTTGGTACTATTTCTATTCGAACATCGTTTGTT
TATGCCTTTCGCTTCATTGCAGCGTGCAAATGTTGGCGGAAAACTCAGAT
CGGATCGTGGATCTGAGAGGCATCGGGGAGCAAGCAGCCCGGCAGCTCTT
AAGGGAGATCATGGGCAGACAGAAGCTCACCTACCCACTCGCCAAGGTGT
TCATGGATTGTGGCGACGACGAGCTCAGCAGGTGAGTGTGTGACGTGTGT
TGTGGTACTCCGTGTTTCGTTTCGATCCATGGTCTCCAAGGGATTTCCCT
CTGGCATGGCATCTTGTGCTTGGCTTGCGACTTAAGGCTAAGATCTTGCG
ATGAGTTGACGCGAGAAACAAGCACAAGTACTTGTGTATTCCAGCCGGCT
CGAACACGTCGGGTGTGCTTGTCACGTCTGAGATCACAAAACTTTGGTCT
GACACACGTCTTCTACGGAAGTAACGACATGTCAAGATGCGCCGCAGACA
AACCAAACAGCTGAGCAGTATACGACCGAAGCGTTTGGACTTGTGTGTGA
CAATGAGGCGAGGGTTTTCCTTTTGTCGAAGTGCATCGCCGGGTGAGCGT
AGTTCATTCATCTTTTCAAGTTGAAATGGATCGCACTGTGGCCGGCGTAA
ACGAGTGTCACCATGGCAGGAGTTGTTGGGACGTGTGTGTGTGTGTGTGT
GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT
GTGTGTTTGTGTGTGTGTGTGTGTGTGTGTGTGTTTGTTGCGTATGTTGA
CCCCCCGAGACTTGGTTATCAGCAAGAAGCATCGTAGCGCCCCCCGTCAT
AACGATCCACGTTGGTCTACCTGATTTTTCACCAAGCCATGGCTCAACAA
GCCTCGTCAAGTGAAGCGGATGTGCTGCATGTGACATGTGACTGGTTGCT
TTTCCCATCTGAAGCAGCACCTTCTTCGACAAGCGTTTTCGGTTCAAGGG
TGCTCAAGAGCGGGCGGAGTTGTCGACACATCGCAGGGAATCTTTTCCTG
CGGCAAAAGTTGTTGACATTTCCGTCGTCCTTCAAATGACGTTTTAATCA
GTTCCCAAGTAATTGTAAGTTCTGAGAGGGAACGTTCCCACTTTACTAGG
GGCGTTACCAACTTTACAAGGAACGGAGACATCGGCATTGTTGAGCTGTT
CTTCCTAAGTTTGGAGACTAATTTCGGACGTCTCCGAAAACGAGCACACC
GCAAGCTCCTCCGAACCAATCATGCGGAGGACATCCGAATTTCTCCGAAC
ATTGGTGCACACGGCGGCACACCCACCTTGTGTGTCGTGCGGGCTCTCCC
GAGGCACGAAACCGACGAGGATCGATGCTAGGACGTATTCCAAGGCCATG
GCTACTGTCAGAAACTACTATTAGGCTTTGGTCTTTCGCCGTCAAGTTGA
TTTCAGGCGTTCTCGTCGAAGTTGAGGTTTAAAGAGTGGTCCGAAAAATA
TTCCGAAATTGCACCAGACACATCTGGTTCACGCTATCATAGACCATGTG
AACCGCAAAGCCTCCGAGCCAACTTCTTTCGAACTGATCGTCAACGTGAT
GCTTGCTGACGGAGATCCTGTCGTTCTACCGTCGTGGGATCTCGGTTGCC
GCAGAAACTGACTGCAAAAAGGGTTGAGGTTTTTAGCAGCCGTTGGAGGA
TGGGATAATTTTCAACCCCTTCCTTGGTCGAGCCTCCACAAACTTGGACA
CGAGCTCCTTCAGCGAGCGTCGAGTGCCCCCGTGTATTATTTCTTTGCGA
AGCAACCTCTTGATATCATTCAATGATGGAGATACTGCTTCTACGTGGTG
GGCGCAGCTTGCAAGCGAAACACAGAGGGTGGATAGAGAGGCTTTTGGTT
GGCACAAAAAGAGGGTGAATCATCCGTTGAAGAGAGGACTATGACCCCTT
CGTTTCCCTGTCCATCTCTTGGCACGCTACCTTGAACTCGCTGCGCAGGG
GGCAATGTGCTTGCTCTGTCTTGCTCTAGACTGTGCCGCTTGTCTGGTTT
CTGACGACTTACTGTTGGATGGTGTGGCGGGTCAAGGGTGTCTGTGCCCG
ATGTTGAGAGGTGGCAGCTGTCCTTCGAGAGATACCAAAATCTTTGAAAA
CCTTCACCGAAGATAGAAATGAGTTCGAACAAGAACTTGGAGAAGTCCGG
ATTGCAATCCTGTTAATAACGGCGCAGACGAATGAATTACGTCGGGTTCG
CTACGTTCTCATTTCTTCGTCCCCCTCGTTGATCCTCAAACTGTGTCTTG
CCTTGCAGCGCTCTCGCATCATTAAACTTGTGGGATGCAATTCCCGCCGG
TCGGCAAGGAAGACATAGCAGGCATCTCTAG
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig1105:7329..10659+

>mRNA_H-canaliculatus_F_contig1105.958.1 ID=mRNA_H-canaliculatus_F_contig1105.958.1|Name=mRNA_H-canaliculatus_F_contig1105.958.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1134bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1105:7329..10659+ (Hapterophycus canaliculatus Oshoro5f female)
ATGGTCGTTGCCGTTGGTGCCACAGAAGCGACTGGACCACCGTCTCCGTC
TTCCTCTACCGCGTCGTTATCGTCGACAGCGACGTCAAGGGGCGCCGCAG
CATCGAAGATCGCGGCAGAAGCAAGAGGAAAAAAAGACGATCAAGGTTCT
TGGAATGCCCCGATGTCGATGCCGATGGCGACATCGACCTCGGTCTCGCC
CGGAAGACGACGAAAACCGGGCGGCTCTATCTCCGCTCCCTCTCCGGCCA
AGGGGCGAGCACCAACAGTGCCGGGGCACAAGACATTGAGGCTTAGGCCG
AGGGTGTACGAGGTCCCGACTCTGGGGTATCTCTGATGGTCGTTGCCGTT
GGTGCCACAGAAGCGACTGGACCACCGTCTCCGTCTTCCTCTACCGCGTC
GTTATCGTCGACAGCGACGTCAAGGGGCGCCGCAGCATCGAAGATCGCGG
CAGAAGCAAGAGGAAAAAAAGACGATCAAGGTTCTTGGAATGCCCCGATG
TCGATGCCGATGGCGACATCGACCTCGGTCTCGCCCGGAAGACGACGAAA
ACCGGGCGGCTCTATCTCCGCTCCCTCTCCGGCCAAGGGGCGAGCACCAA
CAGTGCCGGGGCACAAGACATTGAGGCTTAGGCCGAGGGTGTACGAGGTC
CCGACTCTGGGGTATCTCTGCGTGCAAATGTTGGCGGAAAACTCAGATCG
GATCGTGGATCTGAGAGGCATCGGGGAGCAAGCAGCCCGGCAGCTCTTAA
GGGAGATCATGGGCAGACAGAAGCTCACCTACCCACTCGCCAAGGTGTTC
ATGGATTGTGGCGACGACGAGCTCAGCAGCGTGCAAATGTTGGCGGAAAA
CTCAGATCGGATCGTGGATCTGAGAGGCATCGGGGAGCAAGCAGCCCGGC
AGCTCTTAAGGGAGATCATGGGCAGACAGAAGCTCACCTACCCACTCGCC
AAGGTGTTCATGGATTGTGGCGACGACGAGCTCAGCAGCGCTCTCGCATC
ATTAAACTTGTGGGATGCAATTCCCGCCGGTCGGCAAGGAAGACATAGCA
GGCATCTCTAGCGCTCTCGCATCATTAAACTTGTGGGATGCAATTCCCGC
CGGTCGGCAAGGAAGACATAGCAGGCATCTCTAG
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