mRNA_H-canaliculatus_F_contig11046.955.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig11046.955.1
Unique NamemRNA_H-canaliculatus_F_contig11046.955.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig11046.955.1 vs. uniprot
Match: D8LBZ5_ECTSI (Spindle pole body component n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBZ5_ECTSI)

HSP 1 Score: 189 bits (480), Expect = 5.520e-53
Identity = 100/128 (78.12%), Postives = 109/128 (85.16%), Query Frame = 1 
Query:   40 RFVRKGERIELEHTRYSSDARNGAKSSLMIRPTGETDQLKVVAGRREEHRGEEYESWEILPAGVPYLPPFRRNRPYLTRDFLLAPPPKAPSRAVAKLFGIEPGDKVMIDYD-RRIGGGGGSELQRSRG 420
            RFVRKGERIELEHT YS  AR+GA++SLM+RP       +V AGRRE++RGEEYESWEILPAGVPYLPP+RRNR YLTRDFLLAPPPKAPSRAVAKLFGIEPGD V+IDYD RR GG    ELQRSRG
Sbjct:  481 RFVRKGERIELEHTEYSG-ARSGARTSLMMRPGDYGGGWEVAAGRREQYRGEEYESWEILPAGVPYLPPWRRNRSYLTRDFLLAPPPKAPSRAVAKLFGIEPGDGVVIDYDHRRSGGXXXXELQRSRG 607
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BLAST of mRNA_H-canaliculatus_F_contig11046.955.1 vs. uniprot
Match: A0A6H5K2G1_9PHAE (Spindle pole body component n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2G1_9PHAE)

HSP 1 Score: 179 bits (455), Expect = 5.060e-50
Identity = 89/116 (76.72%), Postives = 101/116 (87.07%), Query Frame = 1 
Query:   40 RFVRKGERIELEHTRYSSDARNGAKSSLMIRPTGETDQLKVVAGRREEHRGEEYESWEILPAGVPYLPPFRRNRPYLTRDFLLAPPPKAPSRAVAKLFGIEPGDKVMIDYDRRIGG 387
            RFVRKGERIELEHT YS  AR+GA++SLM+RP     + +V AGRRE++RGEEYESWE+LPAGVPYLPP+RRNR YLTRDFLLA PPKAPSRAVAKLFGI+PGD V+IDYD R GG
Sbjct:  479 RFVRKGERIELEHTEYSG-ARSGARTSLMMRPGDYGGEWEVAAGRREQYRGEEYESWEVLPAGVPYLPPWRRNRSYLTRDFLLARPPKAPSRAVAKLFGIKPGDSVVIDYDHRRGG 593
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig11046.955.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LBZ5_ECTSI5.520e-5378.13Spindle pole body component n=1 Tax=Ectocarpus sil... [more]
A0A6H5K2G1_9PHAE5.060e-5076.72Spindle pole body component n=1 Tax=Ectocarpus sp.... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig11046contigH-canaliculatus_F_contig11046:1665..3586 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score190.3
Seed ortholog evalue6.5e-46
Seed eggNOG ortholog2880.D8LBZ5
KEGG koko:K16569
GOsGO:0000003,GO:0000226,GO:0000278,GO:0000280,GO:0000923,GO:0000928,GO:0000930,GO:0003674,GO:0005198,GO:0005200,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005815,GO:0005816,GO:0005822,GO:0005824,GO:0005856,GO:0006996,GO:0007010,GO:0007017,GO:0007020,GO:0007049,GO:0007051,GO:0007052,GO:0008092,GO:0008150,GO:0008275,GO:0009987,GO:0015630,GO:0015631,GO:0016043,GO:0022402,GO:0022414,GO:0022607,GO:0031109,GO:0031122,GO:0032153,GO:0032155,GO:0032991,GO:0034622,GO:0043015,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043933,GO:0044085,GO:0044422,GO:0044424,GO:0044430,GO:0044444,GO:0044446,GO:0044450,GO:0044464,GO:0046785,GO:0048285,GO:0051225,GO:0051258,GO:0051321,GO:0051415,GO:0051418,GO:0065003,GO:0070925,GO:0071840,GO:0090307,GO:0097435,GO:0140014,GO:1902850,GO:1903047
EggNOG free text desc.microtubule nucleation by interphase microtubule organizing center
EggNOG OGsKOG2001@1,KOG2001@2759
COG Functional cat.H
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03036,ko04147,ko04812
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionSimilar to tubulin, gamma complex associated protein 2
Ec32 orthologEc-20_003870.1
Exons3
Model size438
Cds size438
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig11046.955.1prot_H-canaliculatus_F_contig11046.955.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig11046 1665..3586 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928780.1086903-CDS-H-canaliculatus_F_contig11046:1664..18231622928780.1086903-CDS-H-canaliculatus_F_contig11046:1664..1823Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11046 1665..1823 +
1696845561.3302817-CDS-H-canaliculatus_F_contig11046:1664..18231696845561.3302817-CDS-H-canaliculatus_F_contig11046:1664..1823Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11046 1665..1823 +
1622928780.1286244-CDS-H-canaliculatus_F_contig11046:2561..26621622928780.1286244-CDS-H-canaliculatus_F_contig11046:2561..2662Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11046 2562..2662 +
1696845561.3415344-CDS-H-canaliculatus_F_contig11046:2561..26621696845561.3415344-CDS-H-canaliculatus_F_contig11046:2561..2662Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11046 2562..2662 +
1622928780.1510513-CDS-H-canaliculatus_F_contig11046:3408..35861622928780.1510513-CDS-H-canaliculatus_F_contig11046:3408..3586Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11046 3409..3586 +
1696845561.3523054-CDS-H-canaliculatus_F_contig11046:3408..35861696845561.3523054-CDS-H-canaliculatus_F_contig11046:3408..3586Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11046 3409..3586 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig11046.955.1

>prot_H-canaliculatus_F_contig11046.955.1 ID=prot_H-canaliculatus_F_contig11046.955.1|Name=mRNA_H-canaliculatus_F_contig11046.955.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=146bp
GAAGANANAGRLGRFVRKGERIELEHTRYSSDARNGAKSSLMIRPTGETD
QLKVVAGRREEHRGEEYESWEILPAGVPYLPPFRRNRPYLTRDFLLAPPP
KAPSRAVAKLFGIEPGDKVMIDYDRRIGGGGGSELQRSRGGEGRAG
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mRNA from alignment at H-canaliculatus_F_contig11046:1665..3586+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig11046.955.1 ID=mRNA_H-canaliculatus_F_contig11046.955.1|Name=mRNA_H-canaliculatus_F_contig11046.955.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=1922bp|location=Sequence derived from alignment at H-canaliculatus_F_contig11046:1665..3586+ (Hapterophycus canaliculatus Oshoro5f female)
GGGGCGGCGGGGGCGAACGCGAACGCCGGGCGCCTCGGCAGGTTTGTTCG
CAAAGGGGAGCGGATCGAGCTGGAGCACACCCGGTACTCCTCGGACGCGC
GCAACGGGGCGAAGTCGTCTCTGATGATACGGCCGACTGGCGAGACGGAC
CAGTTGAAGGTGAGCGGCGGACGGAGCCGCGGGAGGCGGAGAGGCGGCGG
GGGGTGCGTGCGTAACTTGGTTCCCGCTTGTGCTGGCCTCTAGGCCGATG
GGCTCTGCCGTGACGTCGTCGCTCCGACCGTCATGCGCGGTTGTTGTTCA
GCGTTCCTGTCGAGCGTCACCGCATCCCGCATGCAGGAGTTGATCCCAGG
CTCCGGCGCTCCGCTCGCTTGGTGGCCCGCTTTCTTCGCCCCCGCGTTCG
TGCTTGTCGGGATCGCGAAGCGCTTCGAATCTTCCGTTTCGGAACCCTTT
TGGGTTTGCGTCTCGCGACAAGCACGGACGCGTGGCCCTTTGCATGCCGT
CTTGAAAGCACTGGCTCGGCCTGCGTTCGCCTTCCGCTCCACGAAGCTAT
CTACGCGAACGCGCACGTGTTTGTCGTCCTCTGTTGAGCATGCCCCCCCC
CCCCCCCCCCCCCCCCCCCCCCCCCATCCCCCACCACCCCGCGGCCTTCC
CCCTTTCCCCTCCCGCGCGCCCCCGCGCCGCCCCTCGCCCTCGGGGGGGG
GGGGNNNNNNNNNNCGGGCGCGGCCCGGCTCGCCCCTCCGCCCCCCCAGC
CTTTCCACCCGGGCGCCCCCGGGTTTTTCCTCCTTTGTGGGGGCGGCCCC
CCCCCCCCCCCCCCCCGCCTCCATTGAAGTCTCACAACAACTGTCGTGCT
TTCCTCGTCGCCGTCCTGCGGACGTCCGGCGCCGCTTCGGTCTTAAGGTG
GTGGCGGGGAGGCGAGAAGAGCACCGAGGAGAGGAGTACGAGTCGTGGGA
GATCCTGCCGGCAGGTGTGCCGTACCTCCCCCCCTTTCGACGGAATAGGT
GAGTGGGGAGCACGAACCGGAACTTTCGCTGCGCCGCTCGCGGGACTCAA
ACGACCCCCCGCACTGGCTGTTGGGCTACATCGTACATCATGGCGGCGTC
GACCCCGTTCGATGGAACAGAGGAGGTCGAGCCAAGCCGAGGCAATGATC
GAATCCACTTCTTTCTTAGCCGTGCCGGAGTGAAATGGGGTGGAGTGTGC
GACCCGGGCGAGGACTTTCTACCAAATCGAACCTGGCCTCGAACGGAGCC
GTACCAAGGTTGTGCCGCGTTTTCGACCCGAAGCGGCACAGCCGCACCGC
GTCGAAATGGCCGTGCGGTAGCCACACATACCAAGCCGAGGAGGCGTTAT
CCTTACGGCCGAGGTTTGCGGCGGAGGAGGACTGCCGACGAGGGCAAAGG
TGGCCTGTAGCTAGGCCAGCCGGGCGTTGGGCGAGGTAGGATGGTCAAAG
GAGTCGCCACGACGGTAGTGCCCTCGGACGCGCACACACACGTTCGGCCC
GTCGATGAGCCCCCGTCGATGAGCCCCCGTCGATGAGCCCCCGTCGATGA
GCCCCGCCGATGACCGCGGGACGACATCTCCCGAGGCCGTGCACCCGCAC
AGAGATGCACCCACGAACACAGCTCGCTCCACCCACTCGCAACTTTGACA
CCTGCTCCGTTCTTTACCGCCTTCGCCACCCGGCCCCCCCGCCCCACCGC
TGGTCGTACCCCGCCCCCGTGACTCTCCCGGTCCGCGGTGGCAGACCCTA
CCTAACGCGCGACTTCCTGCTAGCGCCGCCTCCGAAGGCACCCTCCCGGG
CAGTAGCGAAGCTCTTCGGCATCGAGCCGGGGGACAAGGTGATGATCGAC
TACGACCGTCGCATCGGCGGCGGCGGCGGCAGCGAGCTACAGCGCTCGCG
AGGGGGCGAGGGAAGGGCGGGC
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig11046:1665..3586+

>mRNA_H-canaliculatus_F_contig11046.955.1 ID=mRNA_H-canaliculatus_F_contig11046.955.1|Name=mRNA_H-canaliculatus_F_contig11046.955.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=876bp|location=Sequence derived from alignment at H-canaliculatus_F_contig11046:1665..3586+ (Hapterophycus canaliculatus Oshoro5f female)
GGGGCGGCGGGGGCGAACGCGAACGCCGGGCGCCTCGGCAGGTTTGTTCG
CAAAGGGGAGCGGATCGAGCTGGAGCACACCCGGTACTCCTCGGACGCGC
GCAACGGGGCGAAGTCGTCTCTGATGATACGGCCGACTGGCGAGACGGAC
CAGTTGAAGGGGGCGGCGGGGGCGAACGCGAACGCCGGGCGCCTCGGCAG
GTTTGTTCGCAAAGGGGAGCGGATCGAGCTGGAGCACACCCGGTACTCCT
CGGACGCGCGCAACGGGGCGAAGTCGTCTCTGATGATACGGCCGACTGGC
GAGACGGACCAGTTGAAGGTGGTGGCGGGGAGGCGAGAAGAGCACCGAGG
AGAGGAGTACGAGTCGTGGGAGATCCTGCCGGCAGGTGTGCCGTACCTCC
CCCCCTTTCGACGGAATAGGTGGTGGCGGGGAGGCGAGAAGAGCACCGAG
GAGAGGAGTACGAGTCGTGGGAGATCCTGCCGGCAGGTGTGCCGTACCTC
CCCCCCTTTCGACGGAATAGACCCTACCTAACGCGCGACTTCCTGCTAGC
GCCGCCTCCGAAGGCACCCTCCCGGGCAGTAGCGAAGCTCTTCGGCATCG
AGCCGGGGGACAAGGTGATGATCGACTACGACCGTCGCATCGGCGGCGGC
GGCGGCAGCGAGCTACAGCGCTCGCGAGGGGGCGAGGGAAGGGCGGGCAC
CCTACCTAACGCGCGACTTCCTGCTAGCGCCGCCTCCGAAGGCACCCTCC
CGGGCAGTAGCGAAGCTCTTCGGCATCGAGCCGGGGGACAAGGTGATGAT
CGACTACGACCGTCGCATCGGCGGCGGCGGCGGCAGCGAGCTACAGCGCT
CGCGAGGGGGCGAGGGAAGGGCGGGC
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