mRNA_H-canaliculatus_F_contig11039.950.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig11039.950.1
Unique NamemRNA_H-canaliculatus_F_contig11039.950.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig11039.950.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig11039contigH-canaliculatus_F_contig11039:671..2813 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size2011
Cds size1014
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig11039.950.1prot_H-canaliculatus_F_contig11039.950.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig11039 671..1818 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928779.2919984-CDS-H-canaliculatus_F_contig11039:670..8601622928779.2919984-CDS-H-canaliculatus_F_contig11039:670..860Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11039 671..860 +
1696845561.089455-CDS-H-canaliculatus_F_contig11039:670..8601696845561.089455-CDS-H-canaliculatus_F_contig11039:670..860Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11039 671..860 +
1622928779.30597-CDS-H-canaliculatus_F_contig11039:942..15341622928779.30597-CDS-H-canaliculatus_F_contig11039:942..1534Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11039 943..1534 +
1696845561.0986683-CDS-H-canaliculatus_F_contig11039:942..15341696845561.0986683-CDS-H-canaliculatus_F_contig11039:942..1534Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11039 943..1534 +
1622928779.3182666-CDS-H-canaliculatus_F_contig11039:1586..18181622928779.3182666-CDS-H-canaliculatus_F_contig11039:1586..1818Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11039 1587..1818 +
1696845561.1072426-CDS-H-canaliculatus_F_contig11039:1586..18181696845561.1072426-CDS-H-canaliculatus_F_contig11039:1586..1818Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11039 1587..1818 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928779.3337262-UTR-H-canaliculatus_F_contig11039:1818..28131622928779.3337262-UTR-H-canaliculatus_F_contig11039:1818..2813Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig11039 1819..2813 +
1696845561.1155553-UTR-H-canaliculatus_F_contig11039:1818..28131696845561.1155553-UTR-H-canaliculatus_F_contig11039:1818..2813Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig11039 1819..2813 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig11039.950.1

>prot_H-canaliculatus_F_contig11039.950.1 ID=prot_H-canaliculatus_F_contig11039.950.1|Name=mRNA_H-canaliculatus_F_contig11039.950.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=338bp
ERSKRETGRFCGDGGVGGGSVGVGVGCGCGCGCRSCRPVCGCFCCCFHGY
SRTGRWGWTSHRRPHAKTSLPPGGGGGGVNERHAVAVRALPIPRETRKRR
RERIARRILSGGCDGGGDSGSGSGGGSSEGNANGTPEALLDGAKAPKSRR
ESLVRPRKAVVPPPPPPPPPCPPLDPSSLAEPSPSSGSRSVPPEANLAAP
PSETKLEATGPPTVDVVKGTEALPRKTVAERELSSRPSGGAGTADGGSPA
LAPGGGGSVCGSSSSSSSSWQSLQRERVVGRTLEAPPAKGEPRRSSGASN
SAGSLPSEAERGLGGPFPQHRTLLPVPPLEVNRRLPA*
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mRNA from alignment at H-canaliculatus_F_contig11039:671..2813+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig11039.950.1 ID=mRNA_H-canaliculatus_F_contig11039.950.1|Name=mRNA_H-canaliculatus_F_contig11039.950.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=2143bp|location=Sequence derived from alignment at H-canaliculatus_F_contig11039:671..2813+ (Hapterophycus canaliculatus Oshoro5f female)
GAACGAAGTAAACGAGAGACAGGGAGGTTCTGCGGAGACGGCGGCGTCGG
CGGCGGGAGTGTCGGCGTCGGCGTCGGCTGCGGCTGCGGCTGCGGCTGCA
GGTCTTGCCGCCCCGTCTGCGGCTGCTTCTGCTGCTGCTTCCACGGCTAT
TCGAGAACGGGACGGTGGGGATGGACATCCCATCGACGCCGCAGAAGCAG
CCGAGGCGTCAGATCGGGCCGTGGAAGATGTTGTCGGGCGCAAGAGGAAG
CGTGCGCAGAGCACGCGATGGTCGCACGCCAAGACCTCGCTGCCGCCCGG
CGGTGGCGGTGGCGGCGTCAATGAGCGCCATGCGGTCGCCGTAAGGGCTC
TGCCTATCCCGCGGGAGACCAGAAAACGTCGCCGTGAACGCATTGCTCGC
CGTATTCTCAGCGGCGGTTGCGACGGCGGTGGCGACAGCGGCAGCGGCAG
TGGCGGGGGCAGCTCTGAGGGAAACGCCAACGGTACTCCAGAGGCCCTCC
TCGATGGCGCCAAAGCCCCTAAGAGCAGGCGTGAGAGCCTCGTCCGGCCC
CGTAAGGCCGTCGTTCCTCCTCCTCCTCCTCCTCCTCCTCCTTGCCCTCC
TCTTGATCCTTCTTCCCTCGCGGAGCCATCGCCGTCCTCGGGGTCACGAT
CGGTCCCGCCGGAGGCGAATCTAGCAGCGCCCCCCTCCGAGACGAAGCTC
GAGGCAACGGGGCCCCCTACAGTCGACGTCGTCAAAGGAACCGAGGCTCT
TCCGAGGAAGACGGTCGCCGAGAGGGAGCTATCGAGCAGGCCGTCCGGTG
GCGCCGGAACGGCGGATGGCGGCTCTCCGGCGCTTGCTCCGGGCGGTGGC
GGCAGCGTGTGCGGGTGGATGGCCCCGGCCTTCCCTCACCAACCCCGCTT
CCAAGACCGACAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCTGGCAGTCG
CTGCAGCGGGAGCGAGTCGTGGGCAGGACGCTGGAAGCGCCGCCGGCGAA
AGGAGAGCCTCGGCGAAGCAGCGGCGCCAGCAACAGCGCAGGCAGTCTGC
CGTCCGAGGCAGAAAGGGGTCTCGGCGGCCCCTTCCCGCAACACCGGACG
TTGCTGCCGGTGCCGCCGCTCGAGGTGAATCGGAGGCTGCCGGCGTGACT
GGCTGGATGGAGAGGCTGTCGAGCGGGTGGATGGGGCTTTTGTCGAAGGC
GACGGGGCGGTCGGGCACGTGAAGCCTTGCCGTGCGGGCGGGGGCAGTGA
GGTGTTCGTTCGTTTCCGACCTTCCCTTCCGCTCCTCTCGGCGAGGCCGG
GGTGCTGCAGCAAAACCATATTTCTCGTTGGCTCGTCCGGAATGAGACCG
CCCGCGATAGGGAATACCATGTGTCGTCCCCGCACACCAGAGTCTTGACT
GGAAAGAAACGAGTGGTGTTGATGGTTCATCGGCACTCGTGGATGAGCAA
TTTCCTTTGTGTTGAGTCCATAGCCCGAACAATGCGGAATGTTTTGGTTA
ACGCACATTTACCTGGGCGAGCTGACGCAAGCCACGCGGTGAACCACGTG
TACGCTACATGGTAAAGCTAATGAGTTCGAATCCTCCTGTTGCTTTGTTA
TTGGAGAGTTGAGGAAAGCGTGGTAAAAAAGTGTACTTACGAGCTGATAC
GATACGCCCACGCTTGACTCGAGAACGAACGGATGAAAACTTTCGTCGGT
TGAAGCTTGTGTGAGTGTCCAAAAACTAAAAAATAGAAGTCAGTCCGAAA
AAAAAGTGAGAAATAATGACCAATAAGAGCAAGTGGGACAACATCGGTGA
AAATCCCGACCGGCAGCACGGCACATCTTTGACGCGGATTCGGTTCAAGA
TTGCCACCATCACGGAGGGCGGAGGTCCAAGGCCCCGAAAGCGTACGAAG
GGGAACAATGCGAGGTGTTTCGGAGATGCGTGTTGGGTAATGGCTTTCGT
TCCGAGCTTCCACAGGGTGATGGGGCGAAGGTCGAGGTTTGGCAATTGCA
AGGTTGCATGGTTCCACGCGCGGGATAAGGGCCGAATCCTTGAGTAGGTA
GGCAGGCTCGATGGTTTTGTGTGCGGCGGGGAGTCAAGTGATGCGCGACA
CCGGTGGTGTGCTGGCAGGCTATCACCGAGGCGGGGATGGGAT
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig11039:671..2813+

>mRNA_H-canaliculatus_F_contig11039.950.1 ID=mRNA_H-canaliculatus_F_contig11039.950.1|Name=mRNA_H-canaliculatus_F_contig11039.950.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=2028bp|location=Sequence derived from alignment at H-canaliculatus_F_contig11039:671..2813+ (Hapterophycus canaliculatus Oshoro5f female)
GAACGAAGTAAACGAGAGACAGGGAGGTTCTGCGGAGACGGCGGCGTCGG
CGGCGGGAGTGTCGGCGTCGGCGTCGGCTGCGGCTGCGGCTGCGGCTGCA
GGTCTTGCCGCCCCGTCTGCGGCTGCTTCTGCTGCTGCTTCCACGGCTAT
TCGAGAACGGGACGGTGGGGATGGACATCCCATCGACGCCGAACGAAGTA
AACGAGAGACAGGGAGGTTCTGCGGAGACGGCGGCGTCGGCGGCGGGAGT
GTCGGCGTCGGCGTCGGCTGCGGCTGCGGCTGCGGCTGCAGGTCTTGCCG
CCCCGTCTGCGGCTGCTTCTGCTGCTGCTTCCACGGCTATTCGAGAACGG
GACGGTGGGGATGGACATCCCATCGACGCCCGCACGCCAAGACCTCGCTG
CCGCCCGGCGGTGGCGGTGGCGGCGTCAATGAGCGCCATGCGGTCGCCGT
AAGGGCTCTGCCTATCCCGCGGGAGACCAGAAAACGTCGCCGTGAACGCA
TTGCTCGCCGTATTCTCAGCGGCGGTTGCGACGGCGGTGGCGACAGCGGC
AGCGGCAGTGGCGGGGGCAGCTCTGAGGGAAACGCCAACGGTACTCCAGA
GGCCCTCCTCGATGGCGCCAAAGCCCCTAAGAGCAGGCGTGAGAGCCTCG
TCCGGCCCCGTAAGGCCGTCGTTCCTCCTCCTCCTCCTCCTCCTCCTCCT
TGCCCTCCTCTTGATCCTTCTTCCCTCGCGGAGCCATCGCCGTCCTCGGG
GTCACGATCGGTCCCGCCGGAGGCGAATCTAGCAGCGCCCCCCTCCGAGA
CGAAGCTCGAGGCAACGGGGCCCCCTACAGTCGACGTCGTCAAAGGAACC
GAGGCTCTTCCGAGGAAGACGGTCGCCGAGAGGGAGCTATCGAGCAGGCC
GTCCGGTGGCGCCGGAACGGCGGATGGCGGCTCTCCGGCGCTTGCTCCGG
GCGGTGGCGGCAGCGTGTGCGGCGCACGCCAAGACCTCGCTGCCGCCCGG
CGGTGGCGGTGGCGGCGTCAATGAGCGCCATGCGGTCGCCGTAAGGGCTC
TGCCTATCCCGCGGGAGACCAGAAAACGTCGCCGTGAACGCATTGCTCGC
CGTATTCTCAGCGGCGGTTGCGACGGCGGTGGCGACAGCGGCAGCGGCAG
TGGCGGGGGCAGCTCTGAGGGAAACGCCAACGGTACTCCAGAGGCCCTCC
TCGATGGCGCCAAAGCCCCTAAGAGCAGGCGTGAGAGCCTCGTCCGGCCC
CGTAAGGCCGTCGTTCCTCCTCCTCCTCCTCCTCCTCCTCCTTGCCCTCC
TCTTGATCCTTCTTCCCTCGCGGAGCCATCGCCGTCCTCGGGGTCACGAT
CGGTCCCGCCGGAGGCGAATCTAGCAGCGCCCCCCTCCGAGACGAAGCTC
GAGGCAACGGGGCCCCCTACAGTCGACGTCGTCAAAGGAACCGAGGCTCT
TCCGAGGAAGACGGTCGCCGAGAGGGAGCTATCGAGCAGGCCGTCCGGTG
GCGCCGGAACGGCGGATGGCGGCTCTCCGGCGCTTGCTCCGGGCGGTGGC
GGCAGCGTGTGCGGCAGCAGCAGCAGCAGCAGCAGCAGCTGGCAGTCGCT
GCAGCGGGAGCGAGTCGTGGGCAGGACGCTGGAAGCGCCGCCGGCGAAAG
GAGAGCCTCGGCGAAGCAGCGGCGCCAGCAACAGCGCAGGCAGTCTGCCG
TCCGAGGCAGAAAGGGGTCTCGGCGGCCCCTTCCCGCAACACCGGACGTT
GCTGCCGGTGCCGCCGCTCGAGGTGAATCGGAGGCTGCCGGCGTGACAGC
AGCAGCAGCAGCAGCAGCAGCTGGCAGTCGCTGCAGCGGGAGCGAGTCGT
GGGCAGGACGCTGGAAGCGCCGCCGGCGAAAGGAGAGCCTCGGCGAAGCA
GCGGCGCCAGCAACAGCGCAGGCAGTCTGCCGTCCGAGGCAGAAAGGGGT
CTCGGCGGCCCCTTCCCGCAACACCGGACGTTGCTGCCGGTGCCGCCGCT
CGAGGTGAATCGGAGGCTGCCGGCGTGA
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