mRNA_H-canaliculatus_F_contig11033.948.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig11033.948.1
Unique NamemRNA_H-canaliculatus_F_contig11033.948.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig11033.948.1 vs. uniprot
Match: A0A6H5L2R7_9PHAE (PRA-CH domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2R7_9PHAE)

HSP 1 Score: 99.8 bits (247), Expect = 2.770e-23
Identity = 49/55 (89.09%), Postives = 52/55 (94.55%), Query Frame = 1 
Query:    1 MVRCAAAGVSWEDVERELDGRSLKLKRRPGNAKAERIAEGDRILGAGRKAEVAGL 165
            MVRCAAAGVSWEDVE+ELD RSLKLKRRPGNAKAERIAEGD+ILGAGRK +VA L
Sbjct:  388 MVRCAAAGVSWEDVEKELDKRSLKLKRRPGNAKAERIAEGDKILGAGRKTQVASL 442
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BLAST of mRNA_H-canaliculatus_F_contig11033.948.1 vs. uniprot
Match: D8LDR4_ECTSI (Phosphoribosyl-AMP cyclohydrolase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDR4_ECTSI)

HSP 1 Score: 99.8 bits (247), Expect = 3.090e-23
Identity = 49/55 (89.09%), Postives = 52/55 (94.55%), Query Frame = 1 
Query:    1 MVRCAAAGVSWEDVERELDGRSLKLKRRPGNAKAERIAEGDRILGAGRKAEVAGL 165
            MVRCAAAGVSWEDVE+ELD RSLKLKRRPGNAKAERIAEGD+ILGAGRK +VA L
Sbjct:  406 MVRCAAAGVSWEDVEKELDKRSLKLKRRPGNAKAERIAEGDKILGAGRKTQVASL 460
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BLAST of mRNA_H-canaliculatus_F_contig11033.948.1 vs. uniprot
Match: A0A4D9D8I2_9STRA (PRA-CH domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D8I2_9STRA)

HSP 1 Score: 63.9 bits (154), Expect = 1.830e-10
Identity = 30/44 (68.18%), Postives = 36/44 (81.82%), Query Frame = 1 
Query:    1 MVRCAAAGVSWEDVERELDGRSLKLKRRPGNAKAERIAEGDRIL 132
            MVRC AAGV+ ED+ER LD R+LKL+RRPGNAKA RI   ++IL
Sbjct:  404 MVRCVAAGVTLEDIERHLDARTLKLQRRPGNAKAHRIDAAEKIL 447
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BLAST of mRNA_H-canaliculatus_F_contig11033.948.1 vs. uniprot
Match: A0A7S2V4U4_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V4U4_9STRA)

HSP 1 Score: 61.2 bits (147), Expect = 1.630e-9
Identity = 27/45 (60.00%), Postives = 35/45 (77.78%), Query Frame = 1 
Query:    1 MVRCAAAGVSWEDVERELDGRSLKLKRRPGNAKAERIAEGDRILG 135
            MVRC AAGV   D+ER+LD +SLK+KRRPGNAK  RI   ++++G
Sbjct:  390 MVRCVAAGVKLADIERDLDAKSLKVKRRPGNAKRHRIEAAEKVVG 434
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BLAST of mRNA_H-canaliculatus_F_contig11033.948.1 vs. uniprot
Match: A0A835ZKL0_9STRA (PRA-CH domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZKL0_9STRA)

HSP 1 Score: 59.3 bits (142), Expect = 7.830e-9
Identity = 31/46 (67.39%), Postives = 35/46 (76.09%), Query Frame = 1 
Query:    1 MVRCAAAGVSWEDVERELDGRSLKLKRRPGNAKAERIAEGDRILGA 138
            +VRCAAAGV   +V   LD R+LKL+RRPGNAKA RIA GD IL A
Sbjct:  416 LVRCAAAGVGLREVGDWLDRRALKLRRRPGNAKAHRIAAGDAILKA 461
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BLAST of mRNA_H-canaliculatus_F_contig11033.948.1 vs. uniprot
Match: A0A2D4CDJ4_PYTIN (Phosphoribosyl-ATP diphosphatase n=2 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4CDJ4_PYTIN)

HSP 1 Score: 58.9 bits (141), Expect = 1.070e-8
Identity = 29/44 (65.91%), Postives = 34/44 (77.27%), Query Frame = 1 
Query:    1 MVRCAAAGVSWEDVERELDGRSLKLKRRPGNAKAERIAEGDRIL 132
            MVRC AAG +  DVER+LD RSLK+KRRPGN+KA RI   + IL
Sbjct:  420 MVRCVAAGATLTDVERQLDMRSLKVKRRPGNSKAYRIEAANEIL 463
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BLAST of mRNA_H-canaliculatus_F_contig11033.948.1 vs. uniprot
Match: A0A1W0A5K4_9STRA (Histidine biosynthesis trifunctional protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1W0A5K4_9STRA)

HSP 1 Score: 58.2 bits (139), Expect = 1.990e-8
Identity = 28/44 (63.64%), Postives = 35/44 (79.55%), Query Frame = 1 
Query:    1 MVRCAAAGVSWEDVERELDGRSLKLKRRPGNAKAERIAEGDRIL 132
            M RC AAGVS++D+E +L+ R+LKLKRRPGNAKA RI   + IL
Sbjct:  358 MARCVAAGVSFQDIEHQLNLRALKLKRRPGNAKAYRIDAANAIL 401
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BLAST of mRNA_H-canaliculatus_F_contig11033.948.1 vs. uniprot
Match: A0A0G4HM72_9ALVE (PRA-CH domain-containing protein n=1 Tax=Chromera velia CCMP2878 TaxID=1169474 RepID=A0A0G4HM72_9ALVE)

HSP 1 Score: 58.2 bits (139), Expect = 2.000e-8
Identity = 29/47 (61.70%), Postives = 33/47 (70.21%), Query Frame = 1 
Query:    1 MVRCAAAGVSWEDVERELDGRSLKLKRRPGNAKAERIAEGDRILGAG 141
            + RC AAGVS  D+E  LD R+LKLKRRPGNAK ERI +  R L  G
Sbjct:  425 LTRCTAAGVSLPDIEAHLDRRALKLKRRPGNAKQERILQAARELNQG 471
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BLAST of mRNA_H-canaliculatus_F_contig11033.948.1 vs. uniprot
Match: A0A7S3YIB2_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3YIB2_HETAK)

HSP 1 Score: 56.2 bits (134), Expect = 2.460e-8
Identity = 27/45 (60.00%), Postives = 34/45 (75.56%), Query Frame = 1 
Query:    1 MVRCAAAGVSWEDVERELDGRSLKLKRRPGNAKAERIAEGDRILG 135
            M RCAAAGV    +E++LD +S KLKRRPGNAKA RIA  + ++G
Sbjct:  101 MARCAAAGVGVGAIEKDLDLKSRKLKRRPGNAKAHRIAAAEAVVG 145
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BLAST of mRNA_H-canaliculatus_F_contig11033.948.1 vs. uniprot
Match: A0A8K1CVT4_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CVT4_PYTOL)

HSP 1 Score: 57.8 bits (138), Expect = 2.740e-8
Identity = 29/44 (65.91%), Postives = 34/44 (77.27%), Query Frame = 1 
Query:    1 MVRCAAAGVSWEDVERELDGRSLKLKRRPGNAKAERIAEGDRIL 132
            MVRC AAGVS  D+E+ LD RSLK+KRRPGN+KA RI   + IL
Sbjct:  426 MVRCVAAGVSLPDIEKFLDMRSLKVKRRPGNSKAYRIDAANEIL 469
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig11033.948.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L2R7_9PHAE2.770e-2389.09PRA-CH domain-containing protein n=1 Tax=Ectocarpu... [more]
D8LDR4_ECTSI3.090e-2389.09Phosphoribosyl-AMP cyclohydrolase n=1 Tax=Ectocarp... [more]
A0A4D9D8I2_9STRA1.830e-1068.18PRA-CH domain-containing protein n=1 Tax=Nannochlo... [more]
A0A7S2V4U4_9STRA1.630e-960.00Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A835ZKL0_9STRA7.830e-967.39PRA-CH domain-containing protein n=1 Tax=Tribonema... [more]
A0A2D4CDJ4_PYTIN1.070e-865.91Phosphoribosyl-ATP diphosphatase n=2 Tax=Pythium i... [more]
A0A1W0A5K4_9STRA1.990e-863.64Histidine biosynthesis trifunctional protein n=1 T... [more]
A0A0G4HM72_9ALVE2.000e-861.70PRA-CH domain-containing protein n=1 Tax=Chromera ... [more]
A0A7S3YIB2_HETAK2.460e-860.00Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A8K1CVT4_PYTOL2.740e-865.91Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig11033contigH-canaliculatus_F_contig11033:600..1387 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score99.0
Seed ortholog evalue7.7e-19
Seed eggNOG ortholog2880.D8LDR4
Preferred nameHIS4
KEGG rclassRC00002,RC00099,RC00242,RC00463,RC01055
KEGG koko:K11755,ko:K14152
KEGG ReactionR01158,R01163,R03012,R04035,R04037
KEGG Pathwayko00340,ko01100,ko01110,ko01230,map00340,map01100,map01110,map01230
KEGG ModuleM00026
GOsGO:0000105,GO:0003674,GO:0003824,GO:0004399,GO:0004635,GO:0004636,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006520,GO:0006547,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009987,GO:0016053,GO:0016462,GO:0016491,GO:0016614,GO:0016616,GO:0016787,GO:0016810,GO:0016814,GO:0016817,GO:0016818,GO:0018130,GO:0019238,GO:0019438,GO:0019752,GO:0030145,GO:0034641,GO:0043167,GO:0043169,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0046483,GO:0046872,GO:0046914,GO:0052803,GO:0055114,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607
EggNOG free text desc.phosphoribosyl-ATP diphosphatase activity
EggNOG OGsCOG0139@1,KOG4311@2759
EC1.1.1.23,3.5.4.19,3.6.1.31
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Hectar predicted targeting categoryno signal peptide or anchor
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-19_001685.1
Exons2
Model size174
Cds size171
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig11033.948.1prot_H-canaliculatus_F_contig11033.948.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig11033 600..1384 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928779.0953844-CDS-H-canaliculatus_F_contig11033:599..6871622928779.0953844-CDS-H-canaliculatus_F_contig11033:599..687Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11033 600..687 +
1696845560.9331498-CDS-H-canaliculatus_F_contig11033:599..6871696845560.9331498-CDS-H-canaliculatus_F_contig11033:599..687Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11033 600..687 +
1622928779.1069639-CDS-H-canaliculatus_F_contig11033:1301..13841622928779.1069639-CDS-H-canaliculatus_F_contig11033:1301..1384Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11033 1302..1384 +
1696845560.9498506-CDS-H-canaliculatus_F_contig11033:1301..13841696845560.9498506-CDS-H-canaliculatus_F_contig11033:1301..1384Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11033 1302..1384 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928779.1192083-UTR-H-canaliculatus_F_contig11033:1384..13871622928779.1192083-UTR-H-canaliculatus_F_contig11033:1384..1387Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig11033 1385..1387 +
1696845560.9588857-UTR-H-canaliculatus_F_contig11033:1384..13871696845560.9588857-UTR-H-canaliculatus_F_contig11033:1384..1387Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig11033 1385..1387 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig11033.948.1

>prot_H-canaliculatus_F_contig11033.948.1 ID=prot_H-canaliculatus_F_contig11033.948.1|Name=mRNA_H-canaliculatus_F_contig11033.948.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=57bp
MVRCAAAGVSWEDVERELDGRSLKLKRRPGNAKAERIAEGDRILGAGRKA
EVAGLR*
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mRNA from alignment at H-canaliculatus_F_contig11033:600..1387+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig11033.948.1 ID=mRNA_H-canaliculatus_F_contig11033.948.1|Name=mRNA_H-canaliculatus_F_contig11033.948.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=788bp|location=Sequence derived from alignment at H-canaliculatus_F_contig11033:600..1387+ (Hapterophycus canaliculatus Oshoro5f female)
ATGGTTCGCTGCGCGGCGGCCGGTGTGAGTTGGGAGGACGTGGAGAGGGA
GCTCGACGGCCGCTCGTTGAAGCTAAAGCGCCGGCCTGGTGAGCACGATC
GCTGACCCGATCCCCCCCCGCGCACGCCTCCTCTGTAGCTCAGGCCCCAC
AACGAGCAGCCAGTCGATTTCCCCGCCGCAGAAAGTTTCTCTGTGCGCAT
CGAAATGAAATAGCCTCGAGAGGGCGTGTAGCTGTCGCGTCGTGACACGG
TTCTTCCGTCTCTGCCGCCACCGTCGTCTGGGGAAAGATCGGTCGACGCG
CGCCCAAAGAAAAATGATCGACGGGGCCAGGCGTTGGCTAGCGTGCGGGT
CGAGCGCGAGGCCTCCTTTTTTTGTGTGGTGCGCGCACATAAAGTTAGCC
AAACGTCTGCGCCGATGGTTGGTTTTGTCCCACTGGAGGAGGCGTGCCCA
GAAAATTGTTGTCGTTCCTGTTACGAGCATTCTTGATTCACGCTTCATAT
TTTTTATTATCTAGAACGGGACACCAATGGCTCCCCATGATCAATCGGTA
TGTGCCACGATCCCTCTAGTGTAGCAACGGGGGTGGGTGAGGGGGGGGGG
CGATGAAGTGTATCAAAGTCGTCCATCGTGCGTCACATACCCACGTGGGA
ATGACCCCGGCCCCTAACCGCCTCCGCAAATCCCCAACTGAAAAAAAAAC
AGGTAACGCAAAAGCCGAGCGCATCGCAGAGGGAGACCGGATACTGGGTG
CCGGTCGCAAGGCCGAGGTCGCGGGCCTGAGATAGATT
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig11033:600..1387+

>mRNA_H-canaliculatus_F_contig11033.948.1 ID=mRNA_H-canaliculatus_F_contig11033.948.1|Name=mRNA_H-canaliculatus_F_contig11033.948.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=342bp|location=Sequence derived from alignment at H-canaliculatus_F_contig11033:600..1387+ (Hapterophycus canaliculatus Oshoro5f female)
ATGGTTCGCTGCGCGGCGGCCGGTGTGAGTTGGGAGGACGTGGAGAGGGA
GCTCGACGGCCGCTCGTTGAAGCTAAAGCGCCGGCCTGATGGTTCGCTGC
GCGGCGGCCGGTGTGAGTTGGGAGGACGTGGAGAGGGAGCTCGACGGCCG
CTCGTTGAAGCTAAAGCGCCGGCCTGGTAACGCAAAAGCCGAGCGCATCG
CAGAGGGAGACCGGATACTGGGTGCCGGTCGCAAGGCCGAGGTCGCGGGC
CTGAGATAGGTAACGCAAAAGCCGAGCGCATCGCAGAGGGAGACCGGATA
CTGGGTGCCGGTCGCAAGGCCGAGGTCGCGGGCCTGAGATAG
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