mRNA_H-canaliculatus_F_contig1103.945.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig1103.945.1
Unique NamemRNA_H-canaliculatus_F_contig1103.945.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig1103.945.1 vs. uniprot
Match: D8LBC9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBC9_ECTSI)

HSP 1 Score: 72.4 bits (176), Expect = 1.480e-11
Identity = 111/255 (43.53%), Postives = 127/255 (49.80%), Query Frame = 1 
Query:    1 MRTRGRALK-VEPDAEAAVEEAKSATAKVSTPTWIVYHEASKSDETAPVATAVESAEAESNAASADEGIVNG-GAAPDDGAIVEKAAPLEEEKPAPSEDVVKAPPSPXXXXXXXXXXXXSSPEAKENGSDESKPAEADA----SNGTPASTTV---DGKVN--GGAVEKEGGENGEITLGDNKDGQSKDDAAGAAADDEEKPKIDAAPSSPSXXXXXXXXXXXXXXXXXXXXXXKEDVVVDYTDEFGRVRQMLQR 732
            MRTRGRALK  EP  E  +EEAK +     TP      E SK +ETAPVATAVESAEA+  AA A     NG G AP  GA                          XXXXXXXXXXXX             KP  A A    SNGT A+T++   +G+V   G AVEKEG ENGEIT GD K G+  +++ G     EE  K   A +  +                      KEDV+VDYTDEFGRVRQMLQR
Sbjct:    1 MRTRGRALKDPEPVVEVTLEEAKGSAITKDTPAAAPQAEESKGEETAPVATAVESAEAK--AADATISGENGNGIAPPAGAXXXXXXXXX-----------------XXXXXXXXXXXXXXXXXXXXXXXXXKPTNAVAGASNSNGTAAATSIGPGNGEVAAAGTAVEKEGAENGEITAGDIKAGKDDENSGG-----EEGKKTGGAAAGDADMEVEPPP--------------KEDVMVDYTDEFGRVRQMLQR 217
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BLAST of mRNA_H-canaliculatus_F_contig1103.945.1 vs. uniprot
Match: A0A6H5KKE1_9PHAE (WW domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKE1_9PHAE)

HSP 1 Score: 58.5 bits (140), Expect = 3.190e-6
Identity = 89/260 (34.23%), Postives = 109/260 (41.92%), Query Frame = 1 
Query:    1 MRTRGRALK-VEPDAEAAVEEAKSATAKVSTPTWIVYHEASKSDETAPVATAVESAEAESNAASADEGIVNG----GAAPDDGAIVEKAAPLEEE---KPAPSEDVVKAPPSPXXXXXXXXXXXXSSPEAKENGSDESKPAEADASNGTPASTTVDGKVN---------GGAVEKEGGENGEITLGDNKDGQSKDDAAGAAADDEEKPKIDAAPSSPSXXXXXXXXXXXXXXXXXXXXXXKEDVVVDYTDEFGRVRQMLQ 729
            MRTRGRALK  EP  E    EAK +     TP      E SK +ETAPVATAVESAEA+     A +  +NG    G AP   A  E +     +   KP+    +  A                    A  + +D++KP                             G AV+KEG ENGEIT GD K G+   ++ G     EE  K   A +  +                      KEDV+VDYTDEFGRVRQMLQ
Sbjct:    1 MRTRGRALKDPEPVVEVTSGEAKGSDIAKDTPAAAPQAEESKGEETAPVATAVESAEAK-----AADATINGENGNGIAPPAVAAAENSGANSNDGDVKPSIQNSLEGA--------------------AAVSAADDAKPTNXXXXXXXXXXXXXXXXXXXXXXXXAAAGTAVDKEGAENGEITAGDIKAGKDDRNSGG-----EEGKKTGGAAAGDADMEVEPPP--------------KEDVMVDYTDEFGRVRQMLQ 216
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1103.945.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LBC9_ECTSI1.480e-1143.53Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KKE1_9PHAE3.190e-634.23WW domain-containing protein n=1 Tax=Ectocarpus sp... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig1103contigH-canaliculatus_F_contig1103:1033..2046 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-27_004400.1
Exons2
Model size735
Cds size735
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928778.6063275-CDS-H-canaliculatus_F_contig1103:1032..16581622928778.6063275-CDS-H-canaliculatus_F_contig1103:1032..1658Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1103 1033..1658 -
1696845560.6228774-CDS-H-canaliculatus_F_contig1103:1032..16581696845560.6228774-CDS-H-canaliculatus_F_contig1103:1032..1658Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1103 1033..1658 -
1622928778.6346269-CDS-H-canaliculatus_F_contig1103:1937..20461622928778.6346269-CDS-H-canaliculatus_F_contig1103:1937..2046Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1103 1938..2046 -
1696845560.6320472-CDS-H-canaliculatus_F_contig1103:1937..20461696845560.6320472-CDS-H-canaliculatus_F_contig1103:1937..2046Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1103 1938..2046 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig1103.945.1prot_H-canaliculatus_F_contig1103.945.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig1103 1033..2046 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig1103.945.1

>prot_H-canaliculatus_F_contig1103.945.1 ID=prot_H-canaliculatus_F_contig1103.945.1|Name=mRNA_H-canaliculatus_F_contig1103.945.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=245bp
MRTRGRALKVEPDAEAAVEEAKSATAKVSTPTWIVYHEASKSDETAPVAT
AVESAEAESNAASADEGIVNGGAAPDDGAIVEKAAPLEEEKPAPSEDVVK
APPSPTPAATAPAPAPASSPEAKENGSDESKPAEADASNGTPASTTVDGK
VNGGAVEKEGGENGEITLGDNKDGQSKDDAAGAAADDEEKPKIDAAPSSP
SPAAKEADMEVEPEPAPAPAPAPKEDVVVDYTDEFGRVRQMLQR*
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mRNA from alignment at H-canaliculatus_F_contig1103:1033..2046-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig1103.945.1 ID=mRNA_H-canaliculatus_F_contig1103.945.1|Name=mRNA_H-canaliculatus_F_contig1103.945.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=1014bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1103:1033..2046- (Hapterophycus canaliculatus Oshoro5f female)
ATGCGTACACGCGGTAGGGCGCTGAAGGTGGAGCCAGATGCCGAGGCGGC
GGTTGAGGAGGCAAAGAGCGCCACCGCGAAGGTAAGCACGCCAACTTGGA
TCGTCTACCGTCAATTTTCGCTGCTCTCTGAAGATGTGTTAGCGAGAGTT
AGGAGTCGTGGCGCCCATCCCGCTCTCTCCTCGGCACTCTGCCTCATATC
CCGCTTCGCCGATGAACCGTAAGGTTGCACTAGGCGTGGCTTTGCCTGCT
GAGCATTCATGTTCTACCGTTTGATCCGGTCCCTCTGCCCTTTATGAAAC
TTTCCTCCTCATCCCACCCTCCCGTTTTTTTGGCCCCTCGAAAAATTACT
TTCGTTTCTAAAGGAGGCCGATGCTGGAGAGGGTCCAGATGAGGCGAGCA
AGAGCGATGAGACTGCACCCGTAGCTACGGCGGTGGAGAGCGCCGAGGCG
GAAAGCAACGCCGCCTCCGCCGATGAAGGCATCGTAAACGGCGGTGCCGC
TCCTGACGACGGCGCGATCGTCGAGAAGGCAGCGCCGTTAGAGGAGGAGA
AGCCTGCTCCTTCCGAAGACGTCGTGAAAGCGCCACCATCACCAACACCG
GCAGCAACAGCACCAGCGCCTGCACCTGCAAGCTCTCCTGAAGCCAAAGA
GAACGGCTCGGATGAATCCAAACCTGCGGAAGCCGATGCCAGCAATGGTA
CTCCTGCGTCCACCACTGTTGACGGGAAAGTCAACGGGGGGGCAGTGGAG
AAGGAAGGCGGGGAAAACGGAGAAATAACCCTCGGTGACAACAAAGACGG
ACAGTCAAAGGATGACGCCGCAGGGGCAGCAGCGGACGACGAGGAAAAAC
CCAAGATCGACGCGGCTCCTTCGTCGCCGTCGCCGGCGGCGAAGGAGGCT
GACATGGAGGTCGAGCCTGAGCCTGCCCCTGCCCCTGCTCCTGCGCCGAA
GGAAGACGTCGTGGTGGACTACACCGACGAATTCGGACGCGTCCGCCAAA
TGCTGCAGAGGTGA
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig1103:1033..2046-

>mRNA_H-canaliculatus_F_contig1103.945.1 ID=mRNA_H-canaliculatus_F_contig1103.945.1|Name=mRNA_H-canaliculatus_F_contig1103.945.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1470bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1103:1033..2046- (Hapterophycus canaliculatus Oshoro5f female)
ATGCGTACACGCGGTAGGGCGCTGAAGGTGGAGCCAGATGCCGAGGCGGC
GGTTGAGGAGGCAAAGAGCGCCACCGCGAAGGTAAGCACGCCAACTTGGA
TCGTCTACCATGCGTACACGCGGTAGGGCGCTGAAGGTGGAGCCAGATGC
CGAGGCGGCGGTTGAGGAGGCAAAGAGCGCCACCGCGAAGGTAAGCACGC
CAACTTGGATCGTCTACCATGAGGCGAGCAAGAGCGATGAGACTGCACCC
GTAGCTACGGCGGTGGAGAGCGCCGAGGCGGAAAGCAACGCCGCCTCCGC
CGATGAAGGCATCGTAAACGGCGGTGCCGCTCCTGACGACGGCGCGATCG
TCGAGAAGGCAGCGCCGTTAGAGGAGGAGAAGCCTGCTCCTTCCGAAGAC
GTCGTGAAAGCGCCACCATCACCAACACCGGCAGCAACAGCACCAGCGCC
TGCACCTGCAAGCTCTCCTGAAGCCAAAGAGAACGGCTCGGATGAATCCA
AACCTGCGGAAGCCGATGCCAGCAATGGTACTCCTGCGTCCACCACTGTT
GACGGGAAAGTCAACGGGGGGGCAGTGGAGAAGGAAGGCGGGGAAAACGG
AGAAATAACCCTCGGTGACAACAAAGACGGACAGTCAAAGGATGACGCCG
CAGGGGCAGCAGCGGACGACGAGGAAAAACCCAAGATCGACGCGGCTCCT
TCGTCGCCGTCGCCGGCGGCGAAGGAGGCTGACATGGAGGTCGAGCCTGA
GCCTGCCCCTGCCCCTGCTCCTGCGCCGAAGGAAGACGTCGTGGTGGACT
ACACCGACGAATTCGGACGCGTCCGCCAAATGCTGCAGAGGTGAATGAGG
CGAGCAAGAGCGATGAGACTGCACCCGTAGCTACGGCGGTGGAGAGCGCC
GAGGCGGAAAGCAACGCCGCCTCCGCCGATGAAGGCATCGTAAACGGCGG
TGCCGCTCCTGACGACGGCGCGATCGTCGAGAAGGCAGCGCCGTTAGAGG
AGGAGAAGCCTGCTCCTTCCGAAGACGTCGTGAAAGCGCCACCATCACCA
ACACCGGCAGCAACAGCACCAGCGCCTGCACCTGCAAGCTCTCCTGAAGC
CAAAGAGAACGGCTCGGATGAATCCAAACCTGCGGAAGCCGATGCCAGCA
ATGGTACTCCTGCGTCCACCACTGTTGACGGGAAAGTCAACGGGGGGGCA
GTGGAGAAGGAAGGCGGGGAAAACGGAGAAATAACCCTCGGTGACAACAA
AGACGGACAGTCAAAGGATGACGCCGCAGGGGCAGCAGCGGACGACGAGG
AAAAACCCAAGATCGACGCGGCTCCTTCGTCGCCGTCGCCGGCGGCGAAG
GAGGCTGACATGGAGGTCGAGCCTGAGCCTGCCCCTGCCCCTGCTCCTGC
GCCGAAGGAAGACGTCGTGGTGGACTACACCGACGAATTCGGACGCGTCC
GCCAAATGCTGCAGAGGTGA
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