mRNA_H-canaliculatus_F_contig11009.932.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig11009.932.1
Unique NamemRNA_H-canaliculatus_F_contig11009.932.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
BLAST of mRNA_H-canaliculatus_F_contig11009.932.1 vs. uniprot
Match: A0A420IUF3_9PEZI (NADH-ubiquinone oxidoreductase chain 4L n=1 Tax=Golovinomyces cichoracearum TaxID=62708 RepID=A0A420IUF3_9PEZI)

HSP 1 Score: 223 bits (569), Expect = 2.980e-73
Identity = 124/134 (92.54%), Postives = 129/134 (96.27%), Query Frame = 1
Query:    1 MNFSIFLFVIGILGFVLNRKNIILMLISIEIMLLSATFLILISSLSFDDILGQTFAVYILTIAGAESAIGLGILVAYYRLRGSSIISGFFGRKVGVTGSHIITCGSVITTTLLAIIAFFEVGFNNIPVTINVAR 402
            M+FSI LF IGI GFVLNRKNIILMLISIEIMLLS TFLILISSLSFDDILGQTFAVYILTIAGAESAIGLGIL+AYYRLRGSSI+SGFFGRKVGV+G+HIITC SVITTTLLAIIAFFEVGFNNIPVTINVAR
Sbjct:    1 MSFSILLFFIGIAGFVLNRKNIILMLISIEIMLLSVTFLILISSLSFDDILGQTFAVYILTIAGAESAIGLGILIAYYRLRGSSIVSGFFGRKVGVSGAHIITCASVITTTLLAIIAFFEVGFNNIPVTINVAR 134          
BLAST of mRNA_H-canaliculatus_F_contig11009.932.1 vs. uniprot
Match: A0A397G403_9GLOM (Uncharacterized protein n=1 Tax=Diversispora epigaea TaxID=1348612 RepID=A0A397G403_9GLOM)

HSP 1 Score: 199 bits (505), Expect = 1.690e-63
Identity = 105/134 (78.36%), Postives = 123/134 (91.79%), Query Frame = 1
Query:    1 MNFSIFLFVIGILGFVLNRKNIILMLISIEIMLLSATFLILISSLSFDDILGQTFAVYILTIAGAESAIGLGILVAYYRLRGSSIISGFFGRKVGVTGSHIITCGSVITTTLLAIIAFFEVGFNNIPVTINVAR 402
            MN S+ +F IGILGFVLNRKNIILMLISIEIMLL+ TFLIL+SSLSFDDILGQT+A+YI+ IAGAESAIGLGILVA+YRLRG SI+SGFFGRK+G++G+ IITC  V+TTT+LAI+AFFEVG NNIPV+I V+R
Sbjct:    1 MNLSLIIFTIGILGFVLNRKNIILMLISIEIMLLAITFLILVSSLSFDDILGQTYAIYIIAIAGAESAIGLGILVAFYRLRGRSIVSGFFGRKIGISGAEIITCFGVVTTTMLAILAFFEVGLNNIPVSIQVSR 134          
BLAST of mRNA_H-canaliculatus_F_contig11009.932.1 vs. uniprot
Match: A0A427XL42_9TREE (NADH dehydrogenase subunit 4L (Fragment) n=1 Tax=Saitozyma podzolica TaxID=1890683 RepID=A0A427XL42_9TREE)

HSP 1 Score: 153 bits (386), Expect = 1.520e-45
Identity = 83/122 (68.03%), Postives = 103/122 (84.43%), Query Frame = 1
Query:    1 MNFSIFLFVIGILGFVLNRKNIILMLISIEIMLLSATFLILISSLSFDDILGQTFAVYILTIAGAESAIGLGILVAYYRLRG--SSIISGFFGRKVGVTGSHIITCGSVITTTLLAIIAFFE 360
            M  S+ LF+IGILGF+LNRKNIILM+ISIEIMLL+ T L+L+SS  FDDI+GQT+++YI+ IAGAESAIGLGILVAYYRLRG  S  + G FGRK+GVTG+HIIT G +  + LL+I+AF+E
Sbjct:    1 MTLSLVLFLIGILGFILNRKNIILMIISIEIMLLAVTLLVLVSSYQFDDIMGQTYSIYIIAIAGAESAIGLGILVAYYRLRGNISLPVGGLFGRKIGVTGAHIITTGCLTLSALLSIVAFYE 122          
BLAST of mRNA_H-canaliculatus_F_contig11009.932.1 vs. uniprot
Match: A0A368F7W0_ANCCA (NADH-ubiquinone oxidoreductase chain 4L n=1 Tax=Ancylostoma caninum TaxID=29170 RepID=A0A368F7W0_ANCCA)

HSP 1 Score: 156 bits (395), Expect = 3.630e-45
Identity = 85/131 (64.89%), Postives = 109/131 (83.21%), Query Frame = 1
Query:    1 MNFSIFLFVIGILGFVLNRKNIILMLISIEIMLLSATFLILISSLSFDDILGQTFAVYILTIAGAESAIGLGILVAYYRLRGSSIISGFFGRKVGVTGSHIITCGSVITTTLLAIIAFFEVGFNNIPVTIN 393
            M  S+ LF+IGILGF+LNRKNIILM+ISIE+MLL+ T L+L+SS  FDDI+GQT++VYI+ IAGAESAIGLGILVAYYRLR     +G  GRK+GVTG+HIIT G ++++ LL+++AF+EVG  N PV+I 
Sbjct:    1 MTLSLVLFLIGILGFILNRKNIILMIISIEMMLLAVTLLVLVSSYQFDDIMGQTYSVYIIAIAGAESAIGLGILVAYYRLR-----AGLLGRKLGVTGAHIITTGCLMSSALLSLVAFYEVGLCNSPVSIE 126          
BLAST of mRNA_H-canaliculatus_F_contig11009.932.1 vs. uniprot
Match: A0A872ZMH4_9EURO (NADH-ubiquinone oxidoreductase subunit 4L n=3 Tax=Aspergillus TaxID=5052 RepID=A0A872ZMH4_9EURO)

HSP 1 Score: 135 bits (341), Expect = 7.580e-39
Identity = 82/103 (79.61%), Postives = 88/103 (85.44%), Query Frame = 1
Query:    1 MNFSIFLFVIGILGFVLNRKNIILMLISIEIMLLSATFLILISSLSFDDILGQTFAVYILTIAGAESAIGLGILVAYYRLRGSSIISGFFGRKVGVTGSHIIT 309
            MNFSIFLF+IGILGFVLNRKNIILMLISIEIMLLS TFLILISSLSFDDILGQTFA+YI+TIAGAESAIGLGILVAYYR   SS+I+        +T SH  T
Sbjct:    1 MNFSIFLFLIGILGFVLNRKNIILMLISIEIMLLSITFLILISSLSFDDILGQTFAIYIITIAGAESAIGLGILVAYYRFI-SSLITYCCSYSNNITNSHFTT 102          
BLAST of mRNA_H-canaliculatus_F_contig11009.932.1 vs. uniprot
Match: NU4LM_TALMA (NADH-ubiquinone oxidoreductase chain 4L n=41 Tax=Eurotiales TaxID=5042 RepID=NU4LM_TALMA)

HSP 1 Score: 134 bits (338), Expect = 1.120e-38
Identity = 76/83 (91.57%), Postives = 81/83 (97.59%), Query Frame = 1
Query:    1 MNFSIFLFVIGILGFVLNRKNIILMLISIEIMLLSATFLILISSLSFDDILGQTFAVYILTIAGAESAIGLGILVAYYRLRGS 249
            MNFSIFLF+IGILGFVLNRKNIILMLISIEIMLL+ TFLILISS +FDDILGQTFA+YI+TIAGAESAIGLGILVAYYRLRGS
Sbjct:    1 MNFSIFLFLIGILGFVLNRKNIILMLISIEIMLLAITFLILISSFNFDDILGQTFAIYIITIAGAESAIGLGILVAYYRLRGS 83          
BLAST of mRNA_H-canaliculatus_F_contig11009.932.1 vs. uniprot
Match: A0A433Q135_9FUNG (NADH-ubiquinone oxidoreductase chain 5 n=1 Tax=Endogone sp. FLAS-F59071 TaxID=2340872 RepID=A0A433Q135_9FUNG)

HSP 1 Score: 147 bits (371), Expect = 1.210e-38
Identity = 83/141 (58.87%), Postives = 103/141 (73.05%), Query Frame = 1
Query:    1 MNFSIFLFVIGILGFVLNRKNIILMLISIEIMLLSATFLILISSLSFDDILGQTFAVYILTIAGAESAIGLGILVAYYRLRGS----------SIISGFFGRKVGVTGSHIITCGSVITTTLLAIIAFFEVGFNNIPVTIN 393
            MN S+ L++IGILGF+LNRKNIILMLISIEI+           S SFDDILGQT+ +Y++ IAGAESAIGLGILVA+YRLRGS          + ++GF GRK+G TGSH ITCGS+I T  LA++AF+EVG    PV++ 
Sbjct:    4 MNLSVVLYLIGILGFILNRKNIILMLISIEII-----------SFSFDDILGQTYGIYVIAIAGAESAIGLGILVAFYRLRGSIAIKPLPLLAATVAGFLGRKIGRTGSHFITCGSLIITASLALVAFYEVGLCQSPVSVT 133          
BLAST of mRNA_H-canaliculatus_F_contig11009.932.1 vs. uniprot
Match: UPI000E3DF23C (NADH-quinone oxidoreductase subunit NuoK n=1 Tax=Staphylococcus aureus TaxID=1280 RepID=UPI000E3DF23C)

HSP 1 Score: 131 bits (329), Expect = 3.630e-37
Identity = 74/79 (93.67%), Postives = 78/79 (98.73%), Query Frame = 1
Query:    1 MNFSIFLFVIGILGFVLNRKNIILMLISIEIMLLSATFLILISSLSFDDILGQTFAVYILTIAGAESAIGLGILVAYYR 237
            MNFSIFLF++GILGFVLNRKNIILMLISIEIMLLS TFLILISSLSFDDILGQTFAVYI+T+AGAESAIGLGILVAYYR
Sbjct:    1 MNFSIFLFLVGILGFVLNRKNIILMLISIEIMLLSITFLILISSLSFDDILGQTFAVYIITVAGAESAIGLGILVAYYR 79          
BLAST of mRNA_H-canaliculatus_F_contig11009.932.1 vs. uniprot
Match: A0A1C1C652_9EURO (NADH-ubiquinone oxidoreductase chain 4L n=4 Tax=cellular organisms TaxID=131567 RepID=A0A1C1C652_9EURO)

HSP 1 Score: 130 bits (327), Expect = 5.280e-37
Identity = 74/86 (86.05%), Postives = 81/86 (94.19%), Query Frame = 1
Query:    1 MNFSIFLFVIGILGFVLNRKNIILMLISIEIMLLSATFLILISSLSFDDILGQTFAVYILTIAGAESAIGLGILVAYYRLRGSSII 258
            M+FS+ LF+IGILGFVLNRKNIILMLISIEIMLLS TFLILISSLSFDD+LGQTF++YI+ IAGAESAIGLGILVAYYRLRGS  I
Sbjct:    1 MSFSLILFLIGILGFVLNRKNIILMLISIEIMLLSITFLILISSLSFDDVLGQTFSIYIIAIAGAESAIGLGILVAYYRLRGSIAI 86          
BLAST of mRNA_H-canaliculatus_F_contig11009.932.1 vs. uniprot
Match: NU4LM_TRIRU (NADH-ubiquinone oxidoreductase chain 4L n=33 Tax=cellular organisms TaxID=131567 RepID=NU4LM_TRIRU)

HSP 1 Score: 129 bits (325), Expect = 1.060e-36
Identity = 74/86 (86.05%), Postives = 81/86 (94.19%), Query Frame = 1
Query:    1 MNFSIFLFVIGILGFVLNRKNIILMLISIEIMLLSATFLILISSLSFDDILGQTFAVYILTIAGAESAIGLGILVAYYRLRGSSII 258
            MN S+ LF+IGILGFVLNRKNIILMLISIEI+LLS TFLILISSL+FDDILGQTFA+YI+TIAGAESAIGLGILVA+YRLRGS  I
Sbjct:    1 MNLSLILFLIGILGFVLNRKNIILMLISIEIILLSVTFLILISSLNFDDILGQTFAIYIITIAGAESAIGLGILVAFYRLRGSIAI 86          
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig11009.932.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A420IUF3_9PEZI2.980e-7392.54NADH-ubiquinone oxidoreductase chain 4L n=1 Tax=Go... [more]
A0A397G403_9GLOM1.690e-6378.36Uncharacterized protein n=1 Tax=Diversispora epiga... [more]
A0A427XL42_9TREE1.520e-4568.03NADH dehydrogenase subunit 4L (Fragment) n=1 Tax=S... [more]
A0A368F7W0_ANCCA3.630e-4564.89NADH-ubiquinone oxidoreductase chain 4L n=1 Tax=An... [more]
A0A872ZMH4_9EURO7.580e-3979.61NADH-ubiquinone oxidoreductase subunit 4L n=3 Tax=... [more]
NU4LM_TALMA1.120e-3891.57NADH-ubiquinone oxidoreductase chain 4L n=41 Tax=E... [more]
A0A433Q135_9FUNG1.210e-3858.87NADH-ubiquinone oxidoreductase chain 5 n=1 Tax=End... [more]
UPI000E3DF23C3.630e-3793.67NADH-quinone oxidoreductase subunit NuoK n=1 Tax=S... [more]
A0A1C1C652_9EURO5.280e-3786.05NADH-ubiquinone oxidoreductase chain 4L n=4 Tax=ce... [more]
NU4LM_TRIRU1.060e-3686.05NADH-ubiquinone oxidoreductase chain 4L n=33 Tax=c... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig11009contigH-canaliculatus_F_contig11009:613..1074 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeFungi
Seed ortholog score140.2
Seed ortholog evalue7.1e-31
Seed eggNOG ortholog1108849.XP_002566968.1
Preferred namenad4L
KEGG rclassRC00061
KEGG koko:K03882
KEGG TC3.D.1.6
KEGG ReactionR11945
KEGG Pathwayko00190,ko01100,ko04714,ko04723,ko05012,map00190,map01100,map04714,map04723,map05012
KEGG ModuleM00142
EggNOG free text desc.Core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that is believed to belong to the minimal assembly required for catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone
EggNOG OGs20NBD@147545,3A678@33154,3P5CB@4751,3QXH0@4890,3SD7G@5042,KOG4669@1,KOG4669@2759
EC1.6.5.3
COG Functional cat.C
Best tax levelEurotiales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03029
Hectar predicted targeting categorysignal peptide
Exons2
Model size405
Cds size405
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928777.1780689-CDS-H-canaliculatus_F_contig11009:612..7701622928777.1780689-CDS-H-canaliculatus_F_contig11009:612..770Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11009 613..770 -
1696845559.9458954-CDS-H-canaliculatus_F_contig11009:612..7701696845559.9458954-CDS-H-canaliculatus_F_contig11009:612..770Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11009 613..770 -
1622928777.1926985-CDS-H-canaliculatus_F_contig11009:827..10741622928777.1926985-CDS-H-canaliculatus_F_contig11009:827..1074Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11009 828..1074 -
1696845559.9638896-CDS-H-canaliculatus_F_contig11009:827..10741696845559.9638896-CDS-H-canaliculatus_F_contig11009:827..1074Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11009 828..1074 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig11009.932.1prot_H-canaliculatus_F_contig11009.932.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig11009 613..1074 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig11009.932.1

>prot_H-canaliculatus_F_contig11009.932.1 ID=prot_H-canaliculatus_F_contig11009.932.1|Name=mRNA_H-canaliculatus_F_contig11009.932.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=135bp
MNFSIFLFVIGILGFVLNRKNIILMLISIEIMLLSATFLILISSLSFDDI
LGQTFAVYILTIAGAESAIGLGILVAYYRLRGSSIISGFFGRKVGVTGSH
IITCGSVITTTLLAIIAFFEVGFNNIPVTINVAR*
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mRNA from alignment at H-canaliculatus_F_contig11009:613..1074-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig11009.932.1 ID=mRNA_H-canaliculatus_F_contig11009.932.1|Name=mRNA_H-canaliculatus_F_contig11009.932.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=462bp|location=Sequence derived from alignment at H-canaliculatus_F_contig11009:613..1074- (Hapterophycus canaliculatus Oshoro5f female)
ATGAATTTTTCAATATTTTTATTTGTCATAGGGATATTAGGATTTGTATT AAATAGAAAAAACATTATATTAATGTTAATTTCTATAGAGATAATGTTAT TATCTGCAACATTTTTAATATTAATCAGTTCACTTAGTTTTGATGATATA TTAGGACAAACTTTTGCTGTATATATTTTAACAATAGCAGGAGCTGAATC TGCAATAGGTTTAGGGATATTAGTAGCATATTATAGATTAAGAGGTAGTA TAACAATACAATATAAATAAATGTATTTAACATTGATAATTTTACCATTA ATAGGTTCAATAATATCAGGTTTCTTTGGTAGAAAAGTAGGTGTAACAGG ATCACATATAATAACATGTGGTTCAGTAATAACTACAACACTTTTAGCTA TAATAGCTTTTTTTGAAGTAGGTTTTAATAATATACCAGTAACAATAAAT GTAGCTAGATGA
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig11009:613..1074-

>mRNA_H-canaliculatus_F_contig11009.932.1 ID=mRNA_H-canaliculatus_F_contig11009.932.1|Name=mRNA_H-canaliculatus_F_contig11009.932.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=810bp|location=Sequence derived from alignment at H-canaliculatus_F_contig11009:613..1074- (Hapterophycus canaliculatus Oshoro5f female)
ATGAATTTTTCAATATTTTTATTTGTCATAGGGATATTAGGATTTGTATT
AAATAGAAAAAACATTATATTAATGTTAATTTCTATAGAGATAATGTTAT
TATCTGCAACATTTTTAATATTAATCAGTTCACTTAGTTTTGATGATATA
TTAGGACAAACTTTTGCTGTATATATTTTAACAATAGCAGGAGCTGAATC
TGCAATAGGTTTAGGGATATTAGTAGCATATTATAGATTAAGAGGTAATG
AATTTTTCAATATTTTTATTTGTCATAGGGATATTAGGATTTGTATTAAA
TAGAAAAAACATTATATTAATGTTAATTTCTATAGAGATAATGTTATTAT
CTGCAACATTTTTAATATTAATCAGTTCACTTAGTTTTGATGATATATTA
GGACAAACTTTTGCTGTATATATTTTAACAATAGCAGGAGCTGAATCTGC
AATAGGTTTAGGGATATTAGTAGCATATTATAGATTAAGAGGTAGTTCAA
TAATATCAGGTTTCTTTGGTAGAAAAGTAGGTGTAACAGGATCACATATA
ATAACATGTGGTTCAGTAATAACTACAACACTTTTAGCTATAATAGCTTT
TTTTGAAGTAGGTTTTAATAATATACCAGTAACAATAAATGTAGCTAGAT
GAGTTCAATAATATCAGGTTTCTTTGGTAGAAAAGTAGGTGTAACAGGAT
CACATATAATAACATGTGGTTCAGTAATAACTACAACACTTTTAGCTATA
ATAGCTTTTTTTGAAGTAGGTTTTAATAATATACCAGTAACAATAAATGT
AGCTAGATGA
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