mRNA_H-canaliculatus_F_contig10993.911.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig10993.911.1
Unique NamemRNA_H-canaliculatus_F_contig10993.911.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig10993.911.1 vs. uniprot
Match: D8LQH8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQH8_ECTSI)

HSP 1 Score: 205 bits (521), Expect = 2.720e-58
Identity = 136/153 (88.89%), Postives = 140/153 (91.50%), Query Frame = 1 
Query:    1 GTLEGVLQVVHRLGNLLRGSWHVVLDTLEQAAGLLGRRAIAPPRWSPQSPETELAEVERHCGDVLLAAERLVEFSTRLEDDALYTLMSSLQALAVVDLANTSTVLPQERTNAREXXXXXXXXXXXXXXXXXXXXXXXXXXASGLVSFVGAAAR 459
            GTLE VLQVVHRLGNLLRG WHV+LDTLEQAAGLLGRRAIA PRWSPQSPETEL EVERHC +VLLAAERLVEFST LED+ALY LMSSLQALAVVDLANTSTVLPQER+ ARE    XXXXXXXXXXXXXXXXXXXXX ASGLVSFVGAAAR
Sbjct:  738 GTLESVLQVVHRLGNLLRGCWHVILDTLEQAAGLLGRRAIARPRWSPQSPETELLEVERHCNEVLLAAERLVEFSTCLEDEALYGLMSSLQALAVVDLANTSTVLPQERSIAREREAAXXXXXXXXXXXXXXXXXXXXX-ASGLVSFVGAAAR 889
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BLAST of mRNA_H-canaliculatus_F_contig10993.911.1 vs. uniprot
Match: A0A6H5L5C0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5C0_9PHAE)

HSP 1 Score: 140 bits (353), Expect = 2.150e-40
Identity = 74/85 (87.06%), Postives = 78/85 (91.76%), Query Frame = 1 
Query:   88 QAAGLLGRRAIAPPRWSPQSPETELAEVERHCGDVLLAAERLVEFSTRLEDDALYTLMSSLQALAVVDLANTSTVLPQERTNARE 342
            +AA LLGRRAIA PRWSPQSPETEL EVERHC +VLLAAERLVEFST LED+ALY LMSSLQALAVVDLANTSTVLPQER+ ARE
Sbjct:    3 KAASLLGRRAIARPRWSPQSPETELLEVERHCNEVLLAAERLVEFSTCLEDEALYGLMSSLQALAVVDLANTSTVLPQERSVARE 87
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig10993.911.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LQH8_ECTSI2.720e-5888.89Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L5C0_9PHAE2.150e-4087.06Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig10993contigH-canaliculatus_F_contig10993:285..2249 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score207.6
Seed ortholog evalue4.1e-51
Seed eggNOG ortholog2880.D8LQH8
KEGG koko:K18466
KEGG Pathwayko04144,map04144
EggNOG free text desc.protein transport
EggNOG OGsKOG1848@1,KOG1848@2759
COG Functional cat.KLT
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko04131
Hectar predicted targeting categoryother localisation
Exons3
Model size459
Cds size459
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig10993.911.1prot_H-canaliculatus_F_contig10993.911.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig10993 285..2249 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928771.619449-CDS-H-canaliculatus_F_contig10993:284..3961622928771.619449-CDS-H-canaliculatus_F_contig10993:284..396Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10993 285..396 -
1696845557.6123028-CDS-H-canaliculatus_F_contig10993:284..3961696845557.6123028-CDS-H-canaliculatus_F_contig10993:284..396Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10993 285..396 -
1622928771.63629-CDS-H-canaliculatus_F_contig10993:1068..12111622928771.63629-CDS-H-canaliculatus_F_contig10993:1068..1211Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10993 1069..1211 -
1696845557.6261814-CDS-H-canaliculatus_F_contig10993:1068..12111696845557.6261814-CDS-H-canaliculatus_F_contig10993:1068..1211Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10993 1069..1211 -
1622928771.6508582-CDS-H-canaliculatus_F_contig10993:2045..22491622928771.6508582-CDS-H-canaliculatus_F_contig10993:2045..2249Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10993 2046..2249 -
1696845557.6345098-CDS-H-canaliculatus_F_contig10993:2045..22491696845557.6345098-CDS-H-canaliculatus_F_contig10993:2045..2249Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10993 2046..2249 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig10993.911.1

>prot_H-canaliculatus_F_contig10993.911.1 ID=prot_H-canaliculatus_F_contig10993.911.1|Name=mRNA_H-canaliculatus_F_contig10993.911.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=153bp
GTLEGVLQVVHRLGNLLRGSWHVVLDTLEQAAGLLGRRAIAPPRWSPQSP
ETELAEVERHCGDVLLAAERLVEFSTRLEDDALYTLMSSLQALAVVDLAN
TSTVLPQERTNAREREAAAQAHANGISGEGRGAGAAAVAAASGLVSFVGA
AAR
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mRNA from alignment at H-canaliculatus_F_contig10993:285..2249-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig10993.911.1 ID=mRNA_H-canaliculatus_F_contig10993.911.1|Name=mRNA_H-canaliculatus_F_contig10993.911.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=1965bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10993:285..2249- (Hapterophycus canaliculatus Oshoro5f female)
GGCACCCTGGAGGGCGTGCTGCAAGTGGTGCACCGGCTGGGCAACCTCTT
GCGGGGCTCCTGGCACGTGGTCCTGGACACCCTCGAGCAGGCGGCGGGGC
TCCTGGGCAGGAGGGCCATCGCGCCCCCGCGGTGGTCCCCGCAGTCGCCG
GAGACGGAGCTGGCCGAGGTGGAGCGGCATTGCGGGGACGTCCTTCTGGC
CGCGGTGAGCAAGCGACAGAAAAGGGTGTACCGGTTCGTGCCCCTTCTTC
GTGGTGGGACCGGGGTGACAAAAAAGGGTGGACCGGTTCGTGCTCCTTCT
TCGTGGTGGGACCCAACAACGGCCTGCTGTTGCTTTCAGCCGCAGTCTCT
CTCGCTGGTCGTCTGGTCGTCTCTTGGCCGTCTTTTTGCCGCCTTCGCTG
GCCCTGACCCTCTCTCCCTTCGTTGCTTGAACGGGGTGTTGGGTGTCCCC
TGTCCTTGTGTGGCGCTTCTCATCGGCTCGGTTGGTCGCGGGTGGTGTTC
GCGAGGAGCGCGTGCCTTGTTCGTTGGTGGGGAAATCGACCGCTCAGACG
GGGCGAAAAAGACAAAGGTGTCGGCGTCGGCCGGGCCAATACGGGATGGC
CGGCTGCCGCGCTGTCTGGTTCGTTCGGTCCGTTATCGCGTGGAGTTGCT
GGGTCGGTCGCATGCGTTCGAGCGGAACAATCGAGTCCCGTGGGTATCCG
TGCATTGTGTGTGGCGGGCACGCACTCGGGTCGAATACTGTGATGACCGG
TGGACTGCTGGAAAGCTGCCAGAGGGAGCGGGGCGGCAACAAAATCTCTT
TTTATCATACCTGTACTTAAACGCACAACCCACCAATCGATATTTCACAT
ACAGCTCTACCGCACAAATGGTGCGCGGACGTGCACGAACATTGTTTATT
CTGTTTGAACCCTCGTTGTTTGGAGTTCAAAAGAAACGTCGAGGTACGTC
TCGCACGACAAACCTCAGGAGGGTTTCCCATGGCGTTGTCATGGCTTTCT
TCAAAACCTCCTTGCTCGGCGCGGGGTCTGCGTTGCAGGAGCGGCTGGTG
GAGTTCTCCACGCGCCTCGAGGACGACGCCCTGTACACGCTCATGTCGTC
GCTGCAGGCGCTGGCGGTGGTGGACCTGGCGAACACGTCCACCGTGCTGC
CGCAGGAGCGCACTAACGCCCGCGAAAGAGAGTGAGTGTTTTCAGTCGCC
CCCGTTGGCCCGTCCTCTCATCTTGTCCGCGTACGAGCAGTTTTCGTGGC
CCGTCTTGAGGCAGTGGTTGTGCTAAAGCCGCCGCGTTGTGGTTTGTGGG
GTGATCCTCTCTGTTCGTGGCTGTTTCAAAAGAAAACATAACACCACCGT
TGGAACACCTACTGAGGTACGTCGTGTGAGGCGTACCCCGAGGCTTCTGT
TGAGTTCCAACTGTTTGTTTCTCTTTCTTGAGCCCCTCTGGTGTTTGGGG
CCGCGAAACGTCGGCGGTGTTTCTGAAGGTGCCTCCACGCTCAGGGCACG
CGCTTGCCCCTCGCAGAGGGTGGTCGCGCTATCGCTCTTTTGCCACCACA
GGCGGCAGGCACGCTTGAGGTTTGTGCTGTGTTGGTTGGGGCTGAAACAC
AGCCAGGTGTCGCTTTTCATCGAGAGGGTCTACGGCTCGCTTCCTGCACA
CCGATGGGCACACGCACACACACGCACACGCACACGCACACACGCGCACA
CAAAAAAAAAGGTACAACCCTTAACCCTCACCACACCCCACCCCTCTCGG
CAGCAATCCTTTGCTCGGCTGGTTCTTCGACCGACTCACGGCTCTGTTGC
TTTCTTGTTCCTTCGATGTCTTCGATGTCTTCGATGTCTTCGGTGTCGCA
CAGAGCGGCGGCGCAAGCCCATGCGAACGGCATCTCCGGCGAGGGGCGCG
GTGCCGGCGCGGCCGCCGTGGCCGCCGCGAGCGGGCTGGTGTCCTTCGTG
GGCGCGGCAGCGAGG
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig10993:285..2249-

>mRNA_H-canaliculatus_F_contig10993.911.1 ID=mRNA_H-canaliculatus_F_contig10993.911.1|Name=mRNA_H-canaliculatus_F_contig10993.911.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=918bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10993:285..2249- (Hapterophycus canaliculatus Oshoro5f female)
GGCACCCTGGAGGGCGTGCTGCAAGTGGTGCACCGGCTGGGCAACCTCTT
GCGGGGCTCCTGGCACGTGGTCCTGGACACCCTCGAGCAGGCGGCGGGGC
TCCTGGGCAGGAGGGCCATCGCGCCCCCGCGGTGGTCCCCGCAGTCGCCG
GAGACGGAGCTGGCCGAGGTGGAGCGGCATTGCGGGGACGTCCTTCTGGC
CGCGGGCACCCTGGAGGGCGTGCTGCAAGTGGTGCACCGGCTGGGCAACC
TCTTGCGGGGCTCCTGGCACGTGGTCCTGGACACCCTCGAGCAGGCGGCG
GGGCTCCTGGGCAGGAGGGCCATCGCGCCCCCGCGGTGGTCCCCGCAGTC
GCCGGAGACGGAGCTGGCCGAGGTGGAGCGGCATTGCGGGGACGTCCTTC
TGGCCGCGGAGCGGCTGGTGGAGTTCTCCACGCGCCTCGAGGACGACGCC
CTGTACACGCTCATGTCGTCGCTGCAGGCGCTGGCGGTGGTGGACCTGGC
GAACACGTCCACCGTGCTGCCGCAGGAGCGCACTAACGCCCGCGAAAGAG
AGAGCGGCTGGTGGAGTTCTCCACGCGCCTCGAGGACGACGCCCTGTACA
CGCTCATGTCGTCGCTGCAGGCGCTGGCGGTGGTGGACCTGGCGAACACG
TCCACCGTGCTGCCGCAGGAGCGCACTAACGCCCGCGAAAGAGAAGCGGC
GGCGCAAGCCCATGCGAACGGCATCTCCGGCGAGGGGCGCGGTGCCGGCG
CGGCCGCCGTGGCCGCCGCGAGCGGGCTGGTGTCCTTCGTGGGCGCGGCA
GCGAGGAGCGGCGGCGCAAGCCCATGCGAACGGCATCTCCGGCGAGGGGC
GCGGTGCCGGCGCGGCCGCCGTGGCCGCCGCGAGCGGGCTGGTGTCCTTC
GTGGGCGCGGCAGCGAGG
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