mRNA_H-canaliculatus_F_contig1099.906.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig1099.906.1
Unique NamemRNA_H-canaliculatus_F_contig1099.906.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig1099.906.1 vs. uniprot
Match: D7FMM2_ECTSI (GE20757 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FMM2_ECTSI)

HSP 1 Score: 80.5 bits (197), Expect = 4.640e-16
Identity = 34/39 (87.18%), Postives = 37/39 (94.87%), Query Frame = 2 
Query:  134 MLDQQHDEKYGDDPRYREWKENTPMIVPDLSKV*RSVFF 250
            ML+QQHDEKYG DPRYREWKENTPMI+PD+SKV RSVFF
Sbjct:  277 MLEQQHDEKYGGDPRYREWKENTPMILPDMSKVWRSVFF 315
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BLAST of mRNA_H-canaliculatus_F_contig1099.906.1 vs. uniprot
Match: A0A6S9K4Z3_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6S9K4Z3_HETAK)

HSP 1 Score: 53.5 bits (127), Expect = 2.800e-6
Identity = 24/41 (58.54%), Postives = 29/41 (70.73%), Query Frame = 3 
Query:    3 EMGVWWAILGVALPTLRGRAKIAFGLASPLFITSLILYVSG 125
            E  VWW +LG+A P LRG  ++A GLASPLF T L+  VSG
Sbjct:  225 ETAVWWGLLGLAAPLLRGPGQLALGLASPLFTTLLLTQVSG 265
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1099.906.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FMM2_ECTSI4.640e-1687.18GE20757 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FMM2... [more]
A0A6S9K4Z3_HETAK2.800e-658.54Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig1099contigH-canaliculatus_F_contig1099:16762..17903 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score66.6
Seed ortholog evalue5e-09
Seed eggNOG ortholog2880.D7FMM2
EggNOG free text desc.oxidoreductase activity, acting on the CH-CH group of donors
EggNOG OGsCOG3752@1,KOG4650@2759
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categorysignal peptide
Exons3
Model size274
Cds size204
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig1099.906.1prot_H-canaliculatus_F_contig1099.906.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig1099 16767..17838 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928771.1899652-UTR-H-canaliculatus_F_contig1099:16761..167661622928771.1899652-UTR-H-canaliculatus_F_contig1099:16761..16766Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1099 16762..16766 +
1696845557.4406154-UTR-H-canaliculatus_F_contig1099:16761..167661696845557.4406154-UTR-H-canaliculatus_F_contig1099:16761..16766Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1099 16762..16766 +
1622928771.2481823-UTR-H-canaliculatus_F_contig1099:17838..179031622928771.2481823-UTR-H-canaliculatus_F_contig1099:17838..17903Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1099 17839..17903 +
1696845557.4831738-UTR-H-canaliculatus_F_contig1099:17838..179031696845557.4831738-UTR-H-canaliculatus_F_contig1099:17838..17903Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1099 17839..17903 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928771.211142-CDS-H-canaliculatus_F_contig1099:16766..168131622928771.211142-CDS-H-canaliculatus_F_contig1099:16766..16813Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1099 16767..16813 +
1696845557.4529057-CDS-H-canaliculatus_F_contig1099:16766..168131696845557.4529057-CDS-H-canaliculatus_F_contig1099:16766..16813Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1099 16767..16813 +
1622928771.2256188-CDS-H-canaliculatus_F_contig1099:17114..172391622928771.2256188-CDS-H-canaliculatus_F_contig1099:17114..17239Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1099 17115..17239 +
1696845557.4623861-CDS-H-canaliculatus_F_contig1099:17114..172391696845557.4623861-CDS-H-canaliculatus_F_contig1099:17114..17239Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1099 17115..17239 +
1622928771.2362735-CDS-H-canaliculatus_F_contig1099:17806..178381622928771.2362735-CDS-H-canaliculatus_F_contig1099:17806..17838Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1099 17807..17838 +
1696845557.4721236-CDS-H-canaliculatus_F_contig1099:17806..178381696845557.4721236-CDS-H-canaliculatus_F_contig1099:17806..17838Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1099 17807..17838 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig1099.906.1

>prot_H-canaliculatus_F_contig1099.906.1 ID=prot_H-canaliculatus_F_contig1099.906.1|Name=mRNA_H-canaliculatus_F_contig1099.906.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=68bp
MGVWWAILGVALPTLRGRAKIAFGLASPLFITSLILYVSGCLLCWTSSTT
RSTGMTRGIESGRKTPP*
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mRNA from alignment at H-canaliculatus_F_contig1099:16762..17903+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig1099.906.1 ID=mRNA_H-canaliculatus_F_contig1099.906.1|Name=mRNA_H-canaliculatus_F_contig1099.906.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=1142bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1099:16762..17903+ (Hapterophycus canaliculatus Oshoro5f female)
GGGAGATGGGAGTGTGGTGGGCGATACTGGGAGTCGCCCTTCCTACCCTA
AGGTGGGCCAGGTCGTCATTGCTGTTGCTGTTGTTGCTGTTTTTGCCGTG
TTCGTCTTTATCGCTGCGTGGTCTTTGTTGCCAAACTTGTCGCCCAGGCG
AGCGGTCTTTCCTGACCGTCAACGCTCCCCTCCCTATCCGCTAGGCTTGC
GGCTCGTCTCTTGCCGAGTCTCGTAGCGTCATGATTTGTGCTGAAGTTGC
TCTGGGTTGATCATCTCGAGGCTATGTTGAAGCTGCACGCTGAAAGCATA
GCAGTCAACTCTCAACCGCCGGCCCGTTCTTGATCCGTGCGTCTGCCTCG
CAGAGGCCGGGCGAAGATCGCGTTTGGACTGGCGAGCCCGCTGTTCATCA
CATCCCTCATCCTGTACGTGAGCGGGTGCCTATTATGCTGGACCAGCAGC
ACGACGAGAAGTACGGGGATGACCCGAGGTATGGTGCCAGCTATTCTGGT
GCGAAGAGGTGTTGTTGTTGTTGTTTATTTTCCCGCTTGTTGCCAACGTC
ATGCCGCGCGCTCGCGGTGACGGTCGTTGTCGCTGTTGTACTGCTGCAAT
GGTTTCGAACCCCCACGATATCGCTGCTATCTCATAGCGTGCATGCGGCT
CGATTTTGATCGCCGTAAAACATCGCCGTGATCCTGTTGAGGCCATTGTG
GACGAAGCTCCACTCCTCTTCGGCATCGGTGCTCGGACACGACGGCTCGA
ACTGTTGCTTTGTATCAAAGGTGGCTCTCTGATCTGCCCTAACAATTCGA
AGAAGGGTATGATGTGTTTCAGCGGGTCATGCGCCCGGACCCTTCGTGAA
GATATGATGACGCGTAGAAACGTCTCGATGTCCCGTCTTCAGGGCCTGGT
ATCAGTACCTGTGCCAACCCTAAGAGTGATGGGCCACCGTCCCACCGTGT
ACAGTGTCAAAAGCCTCTGATCCGTGCGCGTTGTCTTGCAATCGTGGCCA
ATGTACCTACTCCTACCATCGACTTGTTCCTGCAAATCTCGGCAGGTATC
GAGAGTGGAAGGAAAACACCCCCATGATTGTGCCCGACCTTTCCAAGGTG
TAGCGGAGCGTCTTCTTCTGATGAGGGCCGCGTGGACCACAC
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig1099:16762..17903+

>mRNA_H-canaliculatus_F_contig1099.906.1 ID=mRNA_H-canaliculatus_F_contig1099.906.1|Name=mRNA_H-canaliculatus_F_contig1099.906.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=408bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1099:16762..17903+ (Hapterophycus canaliculatus Oshoro5f female)
ATGGGAGTGTGGTGGGCGATACTGGGAGTCGCCCTTCCTACCCTAAGATG
GGAGTGTGGTGGGCGATACTGGGAGTCGCCCTTCCTACCCTAAGAGGCCG
GGCGAAGATCGCGTTTGGACTGGCGAGCCCGCTGTTCATCACATCCCTCA
TCCTGTACGTGAGCGGGTGCCTATTATGCTGGACCAGCAGCACGACGAGA
AGTACGGGGATGACCCGAGAGGCCGGGCGAAGATCGCGTTTGGACTGGCG
AGCCCGCTGTTCATCACATCCCTCATCCTGTACGTGAGCGGGTGCCTATT
ATGCTGGACCAGCAGCACGACGAGAAGTACGGGGATGACCCGAGGTATCG
AGAGTGGAAGGAAAACACCCCCATGAGTATCGAGAGTGGAAGGAAAACAC
CCCCATGA
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