mRNA_H-canaliculatus_F_contig10978.895.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig10978.895.1
Unique NamemRNA_H-canaliculatus_F_contig10978.895.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig10978.895.1 vs. uniprot
Match: A0A6H5K9F0_9PHAE (Cyclin N-terminal domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K9F0_9PHAE)

HSP 1 Score: 488 bits (1255), Expect = 3.290e-166
Identity = 282/384 (73.44%), Postives = 311/384 (80.99%), Query Frame = 1 
Query:    1 MTEVGRLLSVAPEDQDLLCVEVSALGQAPIPGA-LPRVSCDRWHRHQQEEEVLPMSSANQAHEDFLTSLLLKTDAYRPLQTSLRCMEDPGFLDMRGAVVNWFAKVAVSYDFANETVVAALSHFDSRYVSLTVAPVSDHMLLQLAAYVALLIASKMGETSPLRMKSLANLTGRMFTPLQVKRLEMDMISKLNFRLAPPSADETFHCLSSLLHNNSSNN----------YHSDILAAGSYYLKKARARTCWFRHSPYTLAVAALATTYNSMGLGKLRRRLLRECDARARAVTGRGVDIHGVAACAEAMA-NERAAXXXXXXXXARAMC--VRGSTESPVCGGGSGGDSTVGXXXXXXXDTAVKSGWGSPTGVAQGAELLQKAAFSA 1110
            M+E+ RLL    ED DLLCVEVSALGQAP+P   LPRVSCD W   Q+++EV    SA+QAHE+FLTSLL KT+AYRPL+TS + MED  FLDMRGAVVNWFAKV+VSYDFANETVVAALSHFD RYVSLTV PV+DHMLLQLAAYVALLIASKMGET PLRM+SLANLTGRMFTPLQVK+LEMDMISKLNFRLAPPS DE  HCLSSLL  +SS++           HSD+L+A S+YLK+ARARTCWFRH+PYTLAVAALAT YNS+GLGK RRRLLRECDAR+RAVTGRGVD+HGVAACA+AM  +ERAA XXXXXXX        RGSTESPVCGG +               TA K GWGSPTGVAQGAELLQKAAFSA
Sbjct:    1 MSELSRLLPRGEEDTDLLCVEVSALGQAPVPATRLPRVSCDGWQL-QEKQEVFRDGSADQAHEEFLTSLLAKTNAYRPLETSWQVMEDAEFLDMRGAVVNWFAKVSVSYDFANETVVAALSHFD-RYVSLTVTPVNDHMLLQLAAYVALLIASKMGETCPLRMRSLANLTGRMFTPLQVKQLEMDMISKLNFRLAPPSPDEALHCLSSLLLRSSSSSDNKSGRGGVPLHSDVLSASSHYLKRARARTCWFRHAPYTLAVAALATAYNSVGLGKERRRLLRECDARSRAVTGRGVDVHGVAACADAMVRDERAAAXXXXXXXXXXNSGHARGSTESPVCGGSN---------------TAAKDGWGSPTGVAQGAELLQKAAFSA 367
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig10978.895.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5K9F0_9PHAE3.290e-16673.44Cyclin N-terminal domain-containing protein n=2 Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig10978contigH-canaliculatus_F_contig10978:3..2751 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score451.4
Seed ortholog evalue4.3e-124
Seed eggNOG ortholog2880.D8LFC1
KEGG koko:K06627
KEGG Pathwayko04110,ko04152,ko04218,ko04914,ko05161,ko05165,ko05169,ko05203,map04110,map04152,map04218,map04914,map05161,map05165,map05169,map05203
KEGG ModuleM00693
EggNOG free text desc.cell division
EggNOG OGsCOG5024@1,KOG0654@2759
COG Functional cat.D
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03032,ko03036
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionCyclin-like
Ec32 orthologEc-07_005740.1
Exons4
Model size1206
Cds size1206
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig10978.895.1prot_H-canaliculatus_F_contig10978.895.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig10978 3..2751 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928769.0920587-CDS-H-canaliculatus_F_contig10978:2..6771622928769.0920587-CDS-H-canaliculatus_F_contig10978:2..677Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10978 3..677 -
1696845556.8502126-CDS-H-canaliculatus_F_contig10978:2..6771696845556.8502126-CDS-H-canaliculatus_F_contig10978:2..677Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10978 3..677 -
1622928769.1061258-CDS-H-canaliculatus_F_contig10978:1320..14801622928769.1061258-CDS-H-canaliculatus_F_contig10978:1320..1480Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10978 1321..1480 -
1696845556.8644083-CDS-H-canaliculatus_F_contig10978:1320..14801696845556.8644083-CDS-H-canaliculatus_F_contig10978:1320..1480Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10978 1321..1480 -
1622928769.1200926-CDS-H-canaliculatus_F_contig10978:1791..18971622928769.1200926-CDS-H-canaliculatus_F_contig10978:1791..1897Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10978 1792..1897 -
1696845556.873492-CDS-H-canaliculatus_F_contig10978:1791..18971696845556.873492-CDS-H-canaliculatus_F_contig10978:1791..1897Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10978 1792..1897 -
1622928769.133214-CDS-H-canaliculatus_F_contig10978:2486..27511622928769.133214-CDS-H-canaliculatus_F_contig10978:2486..2751Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10978 2487..2751 -
1696845556.8840935-CDS-H-canaliculatus_F_contig10978:2486..27511696845556.8840935-CDS-H-canaliculatus_F_contig10978:2486..2751Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10978 2487..2751 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig10978.895.1

>prot_H-canaliculatus_F_contig10978.895.1 ID=prot_H-canaliculatus_F_contig10978.895.1|Name=mRNA_H-canaliculatus_F_contig10978.895.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=402bp
MTEVGRLLSVAPEDQDLLCVEVSALGQAPIPGALPRVSCDRWHRHQQEEE
VLPMSSANQAHEDFLTSLLLKTDAYRPLQTSLRCMEDPGFLDMRGAVVNW
FAKVAVSYDFANETVVAALSHFDSRYVSLTVAPVSDHMLLQLAAYVALLI
ASKMGETSPLRMKSLANLTGRMFTPLQVKRLEMDMISKLNFRLAPPSADE
TFHCLSSLLHNNSSNNYHSDILAAGSYYLKKARARTCWFRHSPYTLAVAA
LATTYNSMGLGKLRRRLLRECDARARAVTGRGVDIHGVAACAEAMANERA
AAAAAAAATARAMCVRGSTESPVCGGGSGGDSTVGNGNGNGDDTAVKSGW
GSPTGVAQGAELLQKAAFSAAAGRGGGGERDGGGGGGRGGGGGVPLGGGF
SP
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mRNA from alignment at H-canaliculatus_F_contig10978:3..2751-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig10978.895.1 ID=mRNA_H-canaliculatus_F_contig10978.895.1|Name=mRNA_H-canaliculatus_F_contig10978.895.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=2749bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10978:3..2751- (Hapterophycus canaliculatus Oshoro5f female)
ATGACAGAGGTCGGCCGTCTGCTGTCCGTCGCCCCGGAGGATCAGGATCT
CCTGTGCGTCGAGGTTTCCGCCTTGGGACAGGCCCCGATCCCGGGCGCAC
TGCCGAGGGTGTCCTGCGACAGGTGGCACCGGCACCAGCAGGAAGAGGAG
GTGCTCCCCATGAGCAGCGCTAATCAAGCTCACGAGGACTTCCTCACCTC
TCTGCTGTTGAAAACGGACGCGTATCGCCCCCTCCAGACGAGCTTGCGGT
GCATGGAGGACCCAGGTACGGATATCACAGGCAGCAATCACGTTGTCTGA
GTAGATTCCGGAAGTTTTGCCTCTCTGCGTAGCGTGCGCCGCAGGATGTG
GGGTTCTTGGTAGGATAGGATGAAGGGTTTTTGGCCTCATGGGCGGAAGG
GAGATGAATGATGAGCTGCGAACGTCACGCCGTGAAAAGCAAAGTGCCAG
CCGTCACGCAGGGTCGCGAAACAGATACTCGTACGCTTTACATACAGCAG
CAGATCTGCATGTACGTCTTTCCACTGTTTCTCTCGCGTTTGGCAAAAAA
AAGGCACGCGCGCACGGCGGTACCCATGCAAATGCATGTCAGAACAGCAG
CCCGCATGGCATCTTTTAGCCTTCATAATCTGCACCAAGGATGACGGGCA
TATGTGTGACGGAGGTGTGCACGATTGGACCATCCCGTGGCGGATAGGTT
TAACGCTGGCCAGTTGTCGTGCACTCGCTCTCACTGATGCGGGTTCTGGG
GGTGTAATGGCCTCGTCTTCTTGCGCCGCAACTCGGTCCGTCCCAAGTTT
CGCTATTCGATTCTTACCCTCGTCTGTTGCACGTGGCGGTTTCTCGCCTT
GCAGGCTTCCTCGACATGCGAGGGGCCGTGGTGAACTGGTTCGCGAAGGT
GGCAGTGTCTTACGACTTCGCGAACGAGACCGTGGTGGCCGCTTTGAGCC
ACTTCGATAGGTCAGTTTGTCAGCGGCGCCTGCTGCTCGAAAGCCTTGTG
GGTGATGTTGGCCACTGAAGTTTGCTTCAGGGTAGATGAAACAGGTGTTT
CGTCTTTGCGGCTGGACGTGCACCAGTTGCCTCTGCTTTCCCACGGGCAT
ATCCAACCACCGATCCACCGCTGCTGCACCGCTGCGGTCGATATTCCTCT
GTCTACCTGCACCGGGCTGTGCCCACCTTCGTGTCTGGGAAGCCACCGGC
TATCCTTAAACCTGACGGCTGCTTGTTTTTTTTCTGTTGTGCCTTCGAAC
TCATCTGTGATTTTCTGCAAGCAGATACGTGTCCCTCACGGTCGCGCCCG
TGAGCGACCACATGCTCCTTCAGCTCGCCGCCTACGTTGCCCTCCTGATC
GCGTCCAAAATGGGCGAGACCTCCCCCCTTCGGATGAAGAGCTTGGCGAA
CCTCACCGGCCGGATGTTCACCCCTCTCCAGGTGCACACCTGTGAATGGC
CTTTGTTCGTGCTCGCACGCTCTCTAAAGTAACTTACCGTAGCTCCAACC
ATGAGTTGGAACACTCGCGCTATGGTAGATTCGTCTCCGAGCCAATGATG
AACCTCTGGAAGCAATGGGCACAGCGAAGGGAATAACTAACGAGCTTCTC
AATGATCTCGCTGCTATGCGCACATGTAGGGTTCTCCCGGCAGGCAGATA
GACCGGCGTGCTTCTTAGGCCCGGCACGTCGCGCGCGCTGCGATGGTGGA
TTTGTGTTAAAAGATAGAGTGCTTCCGAATTCTGCCCTTGCGCCATCTTA
TTGAGCTTGGGGCAGCGTTGCTTCAAGTACGAAGTGCAGGCCGCTCTTTC
GTCTCCTGCCTAGAGCTGACCCTAAACCGTCCATGGATTTTTGTCCAGGT
TTACGAGCACAATTGAAGCACCCACAGCTCGGGCGCACCCAACCACAGAT
TTCTGCAATTAGCACAGACGTAGTCTCGGCGGAGTTGGTTCCTCCGCTGC
TGTTTCCTTCCCACCACACACACCGCCCCAACCCCATTCGCTTTTTGTGT
AAATTTCCTCACACTCGACCCGGTTCTACTCCCTCCCTCCCTCCCTCCCT
GTCTCCTCCCCTCCCTCTACCCAGGTGAAGCGGCTGGAGATGGACATGAT
TTCCAAGCTCAACTTCCGACTGGCGCCCCCGAGCGCGGACGAGACGTTCC
ACTGCTTGTCCTCGCTGCTTCACAACAACAGCAGCAACAACTATCATTCC
GACATCCTCGCCGCCGGCTCCTACTACCTCAAGAAGGCCCGCGCCAGGAC
GTGTTGGTTTCGGCACTCGCCGTACACTCTCGCGGTGGCCGCGCTCGCCA
CCACCTACAACTCCATGGGCTTGGGGAAGCTGCGGCGACGACTCCTGCGG
GAGTGCGACGCCCGCGCGCGCGCGGTGACAGGGAGGGGCGTCGACATCCA
CGGCGTGGCGGCCTGCGCCGAGGCAATGGCGAACGAGAGAGCGGCGGCGG
CGGCAGCGGCGGCGGCTACCGCTCGCGCCATGTGCGTGCGCGGAAGCACC
GAGTCTCCGGTGTGCGGCGGTGGGAGCGGCGGAGACAGCACGGTCGGCAA
TGGCAACGGCAACGGTGACGATACGGCTGTCAAGTCGGGGTGGGGTTCCC
CTACGGGAGTGGCACAAGGGGCCGAGCTCCTGCAGAAGGCGGCGTTTTCG
GCCGCCGCGGGTAGGGGGGGGGGGGGCGAAAGGGACGGCGGCGGGGGCGG
GGGCAGGGGGGGGGGGGGGGGCGTTCCGCTGGGGGGAGGCTTTTCGCCA
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig10978:3..2751-

>mRNA_H-canaliculatus_F_contig10978.895.1 ID=mRNA_H-canaliculatus_F_contig10978.895.1|Name=mRNA_H-canaliculatus_F_contig10978.895.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=2412bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10978:3..2751- (Hapterophycus canaliculatus Oshoro5f female)
ATGACAGAGGTCGGCCGTCTGCTGTCCGTCGCCCCGGAGGATCAGGATCT
CCTGTGCGTCGAGGTTTCCGCCTTGGGACAGGCCCCGATCCCGGGCGCAC
TGCCGAGGGTGTCCTGCGACAGGTGGCACCGGCACCAGCAGGAAGAGGAG
GTGCTCCCCATGAGCAGCGCTAATCAAGCTCACGAGGACTTCCTCACCTC
TCTGCTGTTGAAAACGGACGCGTATCGCCCCCTCCAGACGAGCTTGCGGT
GCATGGAGGACCCAGATGACAGAGGTCGGCCGTCTGCTGTCCGTCGCCCC
GGAGGATCAGGATCTCCTGTGCGTCGAGGTTTCCGCCTTGGGACAGGCCC
CGATCCCGGGCGCACTGCCGAGGGTGTCCTGCGACAGGTGGCACCGGCAC
CAGCAGGAAGAGGAGGTGCTCCCCATGAGCAGCGCTAATCAAGCTCACGA
GGACTTCCTCACCTCTCTGCTGTTGAAAACGGACGCGTATCGCCCCCTCC
AGACGAGCTTGCGGTGCATGGAGGACCCAGGCTTCCTCGACATGCGAGGG
GCCGTGGTGAACTGGTTCGCGAAGGTGGCAGTGTCTTACGACTTCGCGAA
CGAGACCGTGGTGGCCGCTTTGAGCCACTTCGATAGGCTTCCTCGACATG
CGAGGGGCCGTGGTGAACTGGTTCGCGAAGGTGGCAGTGTCTTACGACTT
CGCGAACGAGACCGTGGTGGCCGCTTTGAGCCACTTCGATAGCAGATACG
TGTCCCTCACGGTCGCGCCCGTGAGCGACCACATGCTCCTTCAGCTCGCC
GCCTACGTTGCCCTCCTGATCGCGTCCAAAATGGGCGAGACCTCCCCCCT
TCGGATGAAGAGCTTGGCGAACCTCACCGGCCGGATGTTCACCCCTCTCC
AGCAGATACGTGTCCCTCACGGTCGCGCCCGTGAGCGACCACATGCTCCT
TCAGCTCGCCGCCTACGTTGCCCTCCTGATCGCGTCCAAAATGGGCGAGA
CCTCCCCCCTTCGGATGAAGAGCTTGGCGAACCTCACCGGCCGGATGTTC
ACCCCTCTCCAGGTGAAGCGGCTGGAGATGGACATGATTTCCAAGCTCAA
CTTCCGACTGGCGCCCCCGAGCGCGGACGAGACGTTCCACTGCTTGTCCT
CGCTGCTTCACAACAACAGCAGCAACAACTATCATTCCGACATCCTCGCC
GCCGGCTCCTACTACCTCAAGAAGGCCCGCGCCAGGACGTGTTGGTTTCG
GCACTCGCCGTACACTCTCGCGGTGGCCGCGCTCGCCACCACCTACAACT
CCATGGGCTTGGGGAAGCTGCGGCGACGACTCCTGCGGGAGTGCGACGCC
CGCGCGCGCGCGGTGACAGGGAGGGGCGTCGACATCCACGGCGTGGCGGC
CTGCGCCGAGGCAATGGCGAACGAGAGAGCGGCGGCGGCGGCAGCGGCGG
CGGCTACCGCTCGCGCCATGTGCGTGCGCGGAAGCACCGAGTCTCCGGTG
TGCGGCGGTGGGAGCGGCGGAGACAGCACGGTCGGCAATGGCAACGGCAA
CGGTGACGATACGGCTGTCAAGTCGGGGTGGGGTTCCCCTACGGGAGTGG
CACAAGGGGCCGAGCTCCTGCAGAAGGCGGCGTTTTCGGCCGCCGCGGGT
AGGGGGGGGGGGGGCGAAAGGGACGGCGGCGGGGGCGGGGGCAGGGGGGG
GGGGGGGGGCGTTCCGCTGGGGGGAGGCTTTTCGCCAGTGAAGCGGCTGG
AGATGGACATGATTTCCAAGCTCAACTTCCGACTGGCGCCCCCGAGCGCG
GACGAGACGTTCCACTGCTTGTCCTCGCTGCTTCACAACAACAGCAGCAA
CAACTATCATTCCGACATCCTCGCCGCCGGCTCCTACTACCTCAAGAAGG
CCCGCGCCAGGACGTGTTGGTTTCGGCACTCGCCGTACACTCTCGCGGTG
GCCGCGCTCGCCACCACCTACAACTCCATGGGCTTGGGGAAGCTGCGGCG
ACGACTCCTGCGGGAGTGCGACGCCCGCGCGCGCGCGGTGACAGGGAGGG
GCGTCGACATCCACGGCGTGGCGGCCTGCGCCGAGGCAATGGCGAACGAG
AGAGCGGCGGCGGCGGCAGCGGCGGCGGCTACCGCTCGCGCCATGTGCGT
GCGCGGAAGCACCGAGTCTCCGGTGTGCGGCGGTGGGAGCGGCGGAGACA
GCACGGTCGGCAATGGCAACGGCAACGGTGACGATACGGCTGTCAAGTCG
GGGTGGGGTTCCCCTACGGGAGTGGCACAAGGGGCCGAGCTCCTGCAGAA
GGCGGCGTTTTCGGCCGCCGCGGGTAGGGGGGGGGGGGGCGAAAGGGACG
GCGGCGGGGGCGGGGGCAGGGGGGGGGGGGGGGGCGTTCCGCTGGGGGGA
GGCTTTTCGCCA
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