mRNA_H-canaliculatus_F_contig10972.892.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig10972.892.1
Unique NamemRNA_H-canaliculatus_F_contig10972.892.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig10972.892.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig10972contigH-canaliculatus_F_contig10972:2386..2898 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size174
Cds size171
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928768.8338268-CDS-H-canaliculatus_F_contig10972:2387..24711622928768.8338268-CDS-H-canaliculatus_F_contig10972:2387..2471Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10972 2388..2471 -
1696845556.770069-CDS-H-canaliculatus_F_contig10972:2387..24711696845556.770069-CDS-H-canaliculatus_F_contig10972:2387..2471Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10972 2388..2471 -
1622928768.8989162-CDS-H-canaliculatus_F_contig10972:2811..28981622928768.8989162-CDS-H-canaliculatus_F_contig10972:2811..2898Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10972 2812..2898 -
1696845556.780565-CDS-H-canaliculatus_F_contig10972:2811..28981696845556.780565-CDS-H-canaliculatus_F_contig10972:2811..2898Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10972 2812..2898 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig10972.892.1prot_H-canaliculatus_F_contig10972.892.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig10972 2388..2898 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig10972.892.1

>prot_H-canaliculatus_F_contig10972.892.1 ID=prot_H-canaliculatus_F_contig10972.892.1|Name=mRNA_H-canaliculatus_F_contig10972.892.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=57bp
AAGRKGTVSHDAGRGDNGSSEDPQARIEKLSLEFEIPDYFLDKNFPGIEG
VLSLGAK
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mRNA from alignment at H-canaliculatus_F_contig10972:2386..2898-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig10972.892.1 ID=mRNA_H-canaliculatus_F_contig10972.892.1|Name=mRNA_H-canaliculatus_F_contig10972.892.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=513bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10972:2386..2898- (Hapterophycus canaliculatus Oshoro5f female)
GCAGCCGGGCGTAAGGGGACGGTATCCCACGACGCGGGGCGTGGCGACAA
CGGCTCCAGCGAAGACCCGCAGGCAAGAATCGAGAAGGTATAGCCAGGGA
ATACCTCCTACGCTTGATCGGACTACGCATTCAGTTTCAGTGGTGGCTGC
CATATACCTATGCTGCCCGCATTCCTCAGTTTTCCAGCCCACCCTGCAGA
AAACCACTCCTCTGTGTTCGGGACTTACCGCCTTTATTGGTTTGTTTCCT
TTCGAAAGTGTCATTTGTACCATCTTCCAGCAGCAACGTCTATGAGGTGC
TTCTGGCTTTGTGTTTGTGTCTCAACTACCGAGAAGCTAGACGAGCGTCG
CTGCTGTCCACTCTCTTTGGTTCCTTTAGCACGAGAGCGTCACACCCTTC
CCCTCCATTTCCGTGCATGCTGAACAGCTCTCGTTGGAGTTCGAGATCCC
CGACTACTTTCTGGACAAGAACTTCCCGGGCATCGAGGGAGTGTTGTCCC
TCGGCGCAAAGCT
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig10972:2386..2898-

>mRNA_H-canaliculatus_F_contig10972.892.1 ID=mRNA_H-canaliculatus_F_contig10972.892.1|Name=mRNA_H-canaliculatus_F_contig10972.892.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=342bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10972:2386..2898- (Hapterophycus canaliculatus Oshoro5f female)
GCAGCCGGGCGTAAGGGGACGGTATCCCACGACGCGGGGCGTGGCGACAA
CGGCTCCAGCGAAGACCCGCAGGCAAGAATCGAGAAGGCAGCCGGGCGTA
AGGGGACGGTATCCCACGACGCGGGGCGTGGCGACAACGGCTCCAGCGAA
GACCCGCAGGCAAGAATCGAGAAGCTCTCGTTGGAGTTCGAGATCCCCGA
CTACTTTCTGGACAAGAACTTCCCGGGCATCGAGGGAGTGTTGTCCCTCG
GCGCAAAGCTCTCGTTGGAGTTCGAGATCCCCGACTACTTTCTGGACAAG
AACTTCCCGGGCATCGAGGGAGTGTTGTCCCTCGGCGCAAAG
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