mRNA_H-canaliculatus_F_contig10972.891.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig10972.891.1
Unique NamemRNA_H-canaliculatus_F_contig10972.891.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig10972.891.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig10972contigH-canaliculatus_F_contig10972:308..2303 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size379
Cds size369
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig10972.891.1prot_H-canaliculatus_F_contig10972.891.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig10972 308..2294 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928768.7339618-CDS-H-canaliculatus_F_contig10972:307..3581622928768.7339618-CDS-H-canaliculatus_F_contig10972:307..358Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10972 308..358 -
1696845556.72825-CDS-H-canaliculatus_F_contig10972:307..3581696845556.72825-CDS-H-canaliculatus_F_contig10972:307..358Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10972 308..358 -
1622928768.7488902-CDS-H-canaliculatus_F_contig10972:1349..15891622928768.7488902-CDS-H-canaliculatus_F_contig10972:1349..1589Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10972 1350..1589 -
1696845556.738858-CDS-H-canaliculatus_F_contig10972:1349..15891696845556.738858-CDS-H-canaliculatus_F_contig10972:1349..1589Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10972 1350..1589 -
1622928768.7695491-CDS-H-canaliculatus_F_contig10972:2216..22941622928768.7695491-CDS-H-canaliculatus_F_contig10972:2216..2294Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10972 2217..2294 -
1696845556.752067-CDS-H-canaliculatus_F_contig10972:2216..22941696845556.752067-CDS-H-canaliculatus_F_contig10972:2216..2294Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10972 2217..2294 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928768.7834766-UTR-H-canaliculatus_F_contig10972:2294..23031622928768.7834766-UTR-H-canaliculatus_F_contig10972:2294..2303Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig10972 2295..2303 -
1696845556.7608368-UTR-H-canaliculatus_F_contig10972:2294..23031696845556.7608368-UTR-H-canaliculatus_F_contig10972:2294..2303Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig10972 2295..2303 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig10972.891.1

>prot_H-canaliculatus_F_contig10972.891.1 ID=prot_H-canaliculatus_F_contig10972.891.1|Name=mRNA_H-canaliculatus_F_contig10972.891.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=123bp
MLECVAERFREAVYGGTWGKLLPSLEEEVKMWMGYLEGLLQDKMDADGDV
AKSRALAARLVNDLSAPRQAGGGEPGRCGRLYRGMVVASRMAAIVVEGKN
IDQQLLRAFCTVGAFRVDFPEML
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mRNA from alignment at H-canaliculatus_F_contig10972:308..2303-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig10972.891.1 ID=mRNA_H-canaliculatus_F_contig10972.891.1|Name=mRNA_H-canaliculatus_F_contig10972.891.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=1996bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10972:308..2303- (Hapterophycus canaliculatus Oshoro5f female)
GGGAGCGCCATGCTGGAGTGCGTGGCAGAGCGTTTCCGCGAAGCTGTATA
CGGCGGCACGTGGGGGAAGCTACTGCCGAGCCTCGAGGTTAGCGAGTAAA
CCCCTGTGAAATGCGCCGTGATGTGGTGTCCTCCGACAACGGGTTGCGTG
TAACGGCGCGAGTGTGTCGTCCCAGTCTCAACCCGTAGTGTGTGGTGCGA
CGAACTTCGCGCTAGATCCCCCGCTCCAGCTCGGCTGAAAAATGGGGGAC
AGTATCATAGAAGGGCGCAGACCGGAGGAGACAAAGCGTAGGGGTAACAA
CAGCCGCAACAGCAGTAGGTATTACCCACATGGCACAACGTGGATACGCG
AGTTACTTTCTGGCCATTTGCTTGCAAACAGTTGTTACCGACACCTTTTG
TCGTGGCGGCGACAACGGCGCCCATCAGAAGCAGGTTACACCGTGCCCCT
TCGCCTTTGCGGTTAACGTTGTCGTCGTCTCGTTCTGAACCCATCTGAAG
ACAAGTCGACGGAGTTGGTGTTCTTGGGCGTCGATAAATGCGCGTTTTCC
CCCGTTCCAGGAATTGAGGCCTCCTGCTCTTCGACCAGCCCCTATCTGAC
AGGCGACATCCACGTTCGAGTTTTCGCCTCGGTACCCTCCATCGTCATAT
CGTCTTTCCGCTTGCCCTCGCCCCTGCCCTCCTCCGTTTCGCTCCCTTTC
CTCTCTCCACCCAGGAGGAGGTCAAAATGTGGATGGGGTACTTGGAGGGT
CTGCTCCAAGACAAGATGGACGCGGACGGCGATGTCGCCAAGTCCAGGGC
TCTCGCAGCGCGGCTCGTGAACGACCTCTCTGCACCGAGGCAGGCCGGGG
GGGGCGAACCCGGGCGGTGCGGCCGGCTCTACCGAGGCATGGTAGTGGCT
AGCCGCATGGCTGCTATCGTGGTCGAGGGGAAGAACATCGACCAGCAGCT
GCTGGTGAGCCAAGAGGGCGGGGAAAGTGTGTCCATTTTTGCTGCCGCTT
TGTGTAGTTTTGTGCAAGTAACTGTCTCGCGTGGTGAGAACAGTGGCTCG
TCCGTTTCATCTTTGTGGTAGGATGAGTTGTCTCCGGGTCTAGTCTTACC
GACTGGACTGTGCGTTGCTTTGCTTCGCCTTTTTTTCAGCCCAACCACCG
GTTCCCTTCCACCCTCGAAGAAGTTCCCTGGACTCCCGAACCAAACCATC
GCAATATCCGGCATGCCGACAGCTCTCAACACAGTCGCTTGCTCTTACGT
ATACAACCCTCTGAGTCATCCATGCAAGAGCGATGGGAAATGTGATGCCC
TCCCCCGTTTGGAGTAAGTTTAGTTTTGCATCTGATTTCCCTACGAACGT
GGGGTGTCACGGCGTCACCGCCGAATGGTGCAGACGTTGGCGCATTGATA
GCCAGGATGTCCCCTCAGCTCGAAGTAAAACACAACACCAACATGCGCTC
AAGTATGTGGACTGCGCGTTTCGTAAAGCCTTCAAGCTATACATGTGGTG
ACCAAAGCTTTTTGGAAGGTAAAAGGGAGGGTTCGAAGGTGCCGTTTCAC
CGCTGGGGGAAGATATTGCAGACGAGATATAGCCGACAGGAAGCATCGAG
CTCAAGGGAGACACATTAGCAACACTACAAATCTCACCTTTGTTTCGAGG
ATATGATGGGCTCACTCAGGAGGAGCAGATCTCGCGAGAGTGACGAAGGT
TTCCGGTTTTGGGAGATGTATGCCGAATCGATGAAGAGGTGGTTTATTGT
CAGGAAACCTCTCACTTTGATAGCCGCCCCCTCCCTCATACGCGAAGCGA
ACGAGCTCGAGAAGAAGGTGTGACAGGTATCCAACAACGATGGTCCGTTG
TGAAGAAACTGCAAATGGTAATCGTTGTACCCCTGTCTGAATGGAATATT
TCTGTGTTGCCCTCCGCGCAATATCACCGCTGCTCCACGCCTTAGCGGGC
CTTCTGCACCGTCGGGGCCTTCAGGGTGGACTTCCCGGAGATGCTC
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig10972:308..2303-

>mRNA_H-canaliculatus_F_contig10972.891.1 ID=mRNA_H-canaliculatus_F_contig10972.891.1|Name=mRNA_H-canaliculatus_F_contig10972.891.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=738bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10972:308..2303- (Hapterophycus canaliculatus Oshoro5f female)
ATGCTGGAGTGCGTGGCAGAGCGTTTCCGCGAAGCTGTATACGGCGGCAC
GTGGGGGAAGCTACTGCCGAGCCTCGAGATGCTGGAGTGCGTGGCAGAGC
GTTTCCGCGAAGCTGTATACGGCGGCACGTGGGGGAAGCTACTGCCGAGC
CTCGAGGAGGAGGTCAAAATGTGGATGGGGTACTTGGAGGGTCTGCTCCA
AGACAAGATGGACGCGGACGGCGATGTCGCCAAGTCCAGGGCTCTCGCAG
CGCGGCTCGTGAACGACCTCTCTGCACCGAGGCAGGCCGGGGGGGGCGAA
CCCGGGCGGTGCGGCCGGCTCTACCGAGGCATGGTAGTGGCTAGCCGCAT
GGCTGCTATCGTGGTCGAGGGGAAGAACATCGACCAGCAGCTGCTGGAGG
AGGTCAAAATGTGGATGGGGTACTTGGAGGGTCTGCTCCAAGACAAGATG
GACGCGGACGGCGATGTCGCCAAGTCCAGGGCTCTCGCAGCGCGGCTCGT
GAACGACCTCTCTGCACCGAGGCAGGCCGGGGGGGGCGAACCCGGGCGGT
GCGGCCGGCTCTACCGAGGCATGGTAGTGGCTAGCCGCATGGCTGCTATC
GTGGTCGAGGGGAAGAACATCGACCAGCAGCTGCTGCGGGCCTTCTGCAC
CGTCGGGGCCTTCAGGGTGGACTTCCCGGAGATGCTCCGGGCCTTCTGCA
CCGTCGGGGCCTTCAGGGTGGACTTCCCGGAGATGCTC
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