mRNA_H-canaliculatus_F_contig1097.888.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig1097.888.1
Unique NamemRNA_H-canaliculatus_F_contig1097.888.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1097.888.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig1097contigH-canaliculatus_F_contig1097:17970..21179 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-17_004020.2
Exons3
Model size1418
Cds size1416
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig1097.888.1prot_H-canaliculatus_F_contig1097.888.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig1097 17972..21179 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928767.9912965-CDS-H-canaliculatus_F_contig1097:17971..184561622928767.9912965-CDS-H-canaliculatus_F_contig1097:17971..18456Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1097 17972..18456 -
1696845556.3016758-CDS-H-canaliculatus_F_contig1097:17971..184561696845556.3016758-CDS-H-canaliculatus_F_contig1097:17971..18456Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1097 17972..18456 -
1622928768.004057-CDS-H-canaliculatus_F_contig1097:19322..193711622928768.004057-CDS-H-canaliculatus_F_contig1097:19322..19371Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1097 19323..19371 -
1696845556.3152177-CDS-H-canaliculatus_F_contig1097:19322..193711696845556.3152177-CDS-H-canaliculatus_F_contig1097:19322..19371Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1097 19323..19371 -
1622928768.0172448-CDS-H-canaliculatus_F_contig1097:20297..211791622928768.0172448-CDS-H-canaliculatus_F_contig1097:20297..21179Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1097 20298..21179 -
1696845556.3277977-CDS-H-canaliculatus_F_contig1097:20297..211791696845556.3277977-CDS-H-canaliculatus_F_contig1097:20297..21179Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1097 20298..21179 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig1097.888.1

>prot_H-canaliculatus_F_contig1097.888.1 ID=prot_H-canaliculatus_F_contig1097.888.1|Name=mRNA_H-canaliculatus_F_contig1097.888.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=472bp
ATATTGPAAAPTVTSTTGPAAPPTATTTTGPVVAPTQQGTTEPVTPPTAT
ATTGPAAPPTATATTGPVAPPTTTSTTGPVVSPTQQGTTEPATPPTATAT
TGPAAPPTATATTGPVAPPTATTTTGPVVAPTQQGTTEPVAPPTATATTG
PAAAPTVTATTGPVAPPTTAATTEPAGTDPPTIVLSSPSPGTAPPQVSVP
TASTTSPVIQIDPPTASTTSSPLSAPNAPTIPPIIPTALPVASPPDPEPA
TTGPVEQPAAAPGIPTNAPGVAQQPVVPGTTPAPAPAVAPSTQQIATVQP
VVGQQPSVSPVASPTVTVPTPTADPISVVPSPPPAPIALVPSPPPAPAAA
VTGTASPAVPPGTPTAPPAAGPPTAVVPTSQPGAVVPGQPTLQPLLPGQS
PTVATTPPLLPGQTAAPVARDVPTTPLVPTAAPIAGGTARPAVAGPVGAT
VPPAVAPLQPTMSPIVGAPTIR
back to top

mRNA from alignment at H-canaliculatus_F_contig1097:17970..21179-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig1097.888.1 ID=mRNA_H-canaliculatus_F_contig1097.888.1|Name=mRNA_H-canaliculatus_F_contig1097.888.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=3210bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1097:17970..21179- (Hapterophycus canaliculatus Oshoro5f female)
GCAACGGCAACAACCGGGCCGGCGGCGGCGCCTACGGTAACGTCAACAAC
CGGACCGGCCGCGCCACCCACGGCAACGACAACAACCGGACCGGTTGTAG
CGCCTACACAGCAGGGGACGACGGAGCCGGTGACGCCGCCCACGGCAACG
GCAACAACCGGGCCGGCCGCGCCACCTACGGCAACGGCAACCACCGGGCC
GGTCGCGCCACCTACGACGACGTCAACGACGGGGCCGGTCGTATCGCCTA
CGCAACAGGGGACGACGGAGCCGGCGACGCCGCCGACGGCAACGGCAACA
ACCGGGCCGGCCGCGCCACCTACGGCAACGGCAACAACCGGGCCGGTTGC
ACCACCCACGGCAACGACAACAACCGGACCGGTTGTAGCGCCTACGCAGC
AGGGGACGACGGAGCCGGTCGCGCCACCTACAGCAACGGCAACAACCGGG
CCGGCGGCGGCGCCTACGGTAACGGCAACAACCGGGCCGGTTGCGCCACC
TACGACAGCGGCAACAACCGAACCGGCAGGGACCGACCCACCCACAATTG
TTTTGAGTTCGCCTTCCCCTGGCACCGCCCCACCTCAAGTGTCCGTCCCG
ACTGCAAGCACGACGTCCCCGGTAATACAGATAGACCCCCCCACCGCCTC
AACAACCTCGTCACCCCTTTCCGCCCCAAACGCTCCCACGATACCTCCGA
TCATTCCTACCGCTCTTCCCGTGGCATCTCCTCCTGATCCTGAACCTGCT
ACAACGGGACCGGTGGAGCAGCCTGCTGCCGCCCCTGGAATTCCCACCAA
TGCCCCTGGGGTCGCACAGCAGCCGGTGGTGCCGGGGACGACACCGGCAC
CAGCGCCAGCTGTCGCACCGAGCACTCAGCAGGTGTGCTAGATTGTGTGT
GCGCGCGTGTGCTGGCCATTTTTTGCTGTCATCGTGTGCGTGCCAAGACG
CGTCGCTCAAATCGGAACCGCGCTTGATGATGCCAGTGATTAGTTGGCCA
TCCTTGGTGCAGGTTTAGGACCGCCCAGGTCAGCAGCCCGGGTTCCAAAA
ACTGGCGGCAGTCGATATCAGCGATGAGTCGAATTTCTTTCTAGTAAGTC
AACTTGAAAGCCACCCCATGAGCTGTATCTTGAAGACACAAATATACTTT
ACGAACCCGTCATAAACAGGACCAAGGGCTCGATCTCACGTGGATCCCAG
AGTTTGGGTGTTTTTGAACCCGTCTGCAGGAAGCTTAAGATCAGAACCTC
GTCCGTTGCTTTAGCCTACTCCTGAAAGAGCTGTGTAGAGGATACAAACT
GCTTGTTGTTGAACAAAGTCTCTCTGGCGCCATCTTTCCTTGTTCGTGAG
GGCGTCCTCTTGCCCGACATGAAGATTGCGCACTGTCAGACTTGCAGCTG
CCGTCCGGGAGCCTTCTCGTGACGAGCGTGTTGGTGTTAACGGGTCCAAG
GGCGTTCCGAGAAGTTTTATCACTTGGCCGCAGAGAGCCACAACTCGTCT
TACTGTTCCTGCCATGCAGCTAAATGTACAAACGCCTCTATTCTCATCAC
GCGATCAGCATGATGGCCGTACCGCCGCTACCAAGCCCGCCTGTCGCTGC
AAAAATGTGTCAAGCCTAGCGATCGAACGTTCTGTTCTGCAAGATCCCAC
CATTTCTCGGATCGAGTTAGTTGTCATGAAAATCTTCGTGCCTTCTCAGG
CCGATTGTTTTCGAAGTACATCGCAGGTGAACTGATCCCGGCGTAATATT
TGTCCATCTTGTCCATTGCCCTTCCCTCCTCCCCGTTGTCATCGCCGTGA
AACTCAAGATCGCGACGGTCCAGCCTGTGGTCGGACAGCAACCAAGCGTT
TCTCCAGGTGAGCACAAACGGGATTCAATCTGGAATCGATGTGTGATCCG
GAGGAACGATTCCTGGCTGCTTTCGCGATTTTTTTGCTGCCTCAGCAACG
TCCGTGATTGATACCGCGGGGTCAAATCAACCCAAGTTTTTTTTTGTTGT
GCCCGAAAAACGAAGATCATGCGGCTTGAGACGAATCAGCCATCCACACA
TCCTTCGCTGACCTGTGAGGTGTATTGGCTCTTCGCCTGTCCGGCGTACC
ATGAATGAGGGTCTCAAAGCGTCTGAGTCAACGTGTCAACCCCCACATGC
CCAAAAATAAACTGTTGAGTTCACGGGCTGATGGCCGCATCACTTTGTCA
TGTTGAGACTCGCGAAACGTCCCGCCCTCAAGAATGACTCCTCACCGTGC
CGCCGTGGTATGGTTGACAGGTGTCCAGTCACGTTGGCACCGCGAGGGGT
TGTCCTACGTTGTTGCGTGCTGTCCGTCGCCTCCTTCCTCTTTGACGAGG
CTTAAAAGAGGCTCGATGCCGCTGTAGGCAGCTCCGTAGGAAGCGCTTGG
ACACGTCAATGTTTTCGGCCCGGCCGTCGCCATCGCGCGGTCATCTGCGT
ATCGTGCCGCGTTCCGCCTAACGTGCACAGCCTCAGCTTTTTTTACTCCT
CGAGTCAGGCCGCAAAAGAAAACTCTCGACTCTGGCGCGGAGCCGCCCGG
CCCGACCGCGTAACATCTGCCATACGCTGCCGAAACAAGTAGGGTGGTCG
TCCATGTTTCTTCACCCGCCTCTCACCCGCATCTCGAATCGCCCGCACCC
TTCCTCGCGTCTCGTCGCATCGTATACACCGTTACCGAATACCGGTGATC
TCCGCACGCTCGGCGCTTCACAGTAGCGTCGCCGACCGTGACTGTCCCTA
CGCCAACGGCGGATCCCATAAGCGTCGTGCCTTCCCCACCCCCAGCTCCC
ATCGCCCTGGTACCCTCTCCCCCCCCCGCGCCCGCGGCGGCGGTAACCGG
TACCGCTTCCCCGGCCGTTCCCCCCGGAACGCCGACGGCGCCGCCCGCGG
CGGGACCTCCTACCGCCGTTGTTCCGACCTCGCAGCCTGGTGCCGTGGTT
CCTGGCCAGCCAACCCTCCAGCCCCTTCTTCCCGGACAATCCCCCACCGT
CGCCACCACCCCGCCCCTCTTGCCGGGGCAGACCGCCGCCCCCGTCGCCA
GGGATGTTCCCACCACACCCCTTGTTCCCACCGCCGCCCCCATCGCCGGC
GGCACCGCCCGCCCGGCCGTAGCAGGTCCCGTAGGCGCCACCGTGCCGCC
CGCTGTCGCGCCGTTGCAGCCGACTATGTCGCCGATCGTTGGGGCTCCCA
CCATCCGCCC
back to top

Coding sequence (CDS) from alignment at H-canaliculatus_F_contig1097:17970..21179-

>mRNA_H-canaliculatus_F_contig1097.888.1 ID=mRNA_H-canaliculatus_F_contig1097.888.1|Name=mRNA_H-canaliculatus_F_contig1097.888.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=2832bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1097:17970..21179- (Hapterophycus canaliculatus Oshoro5f female)
GCAACGGCAACAACCGGGCCGGCGGCGGCGCCTACGGTAACGTCAACAAC
CGGACCGGCCGCGCCACCCACGGCAACGACAACAACCGGACCGGTTGTAG
CGCCTACACAGCAGGGGACGACGGAGCCGGTGACGCCGCCCACGGCAACG
GCAACAACCGGGCCGGCCGCGCCACCTACGGCAACGGCAACCACCGGGCC
GGTCGCGCCACCTACGACGACGTCAACGACGGGGCCGGTCGTATCGCCTA
CGCAACAGGGGACGACGGAGCCGGCGACGCCGCCGACGGCAACGGCAACA
ACCGGGCCGGCCGCGCCACCTACGGCAACGGCAACAACCGGGCCGGTTGC
ACCACCCACGGCAACGACAACAACCGGACCGGTTGTAGCGCCTACGCAGC
AGGGGACGACGGAGCCGGTCGCGCCACCTACAGCAACGGCAACAACCGGG
CCGGCGGCGGCGCCTACGGTAACGGCAACAACCGGGCCGGTTGCGCCACC
TACGACAGCGGCAACAACCGAACCGGCAGGGACCGACCCACCCACAATTG
TTTTGAGTTCGCCTTCCCCTGGCACCGCCCCACCTCAAGTGTCCGTCCCG
ACTGCAAGCACGACGTCCCCGGTAATACAGATAGACCCCCCCACCGCCTC
AACAACCTCGTCACCCCTTTCCGCCCCAAACGCTCCCACGATACCTCCGA
TCATTCCTACCGCTCTTCCCGTGGCATCTCCTCCTGATCCTGAACCTGCT
ACAACGGGACCGGTGGAGCAGCCTGCTGCCGCCCCTGGAATTCCCACCAA
TGCCCCTGGGGTCGCACAGCAGCCGGTGGTGCCGGGGACGACACCGGCAC
CAGCGCCAGCTGTCGCACCGAGCACTCAGCAGGCAACGGCAACAACCGGG
CCGGCGGCGGCGCCTACGGTAACGTCAACAACCGGACCGGCCGCGCCACC
CACGGCAACGACAACAACCGGACCGGTTGTAGCGCCTACACAGCAGGGGA
CGACGGAGCCGGTGACGCCGCCCACGGCAACGGCAACAACCGGGCCGGCC
GCGCCACCTACGGCAACGGCAACCACCGGGCCGGTCGCGCCACCTACGAC
GACGTCAACGACGGGGCCGGTCGTATCGCCTACGCAACAGGGGACGACGG
AGCCGGCGACGCCGCCGACGGCAACGGCAACAACCGGGCCGGCCGCGCCA
CCTACGGCAACGGCAACAACCGGGCCGGTTGCACCACCCACGGCAACGAC
AACAACCGGACCGGTTGTAGCGCCTACGCAGCAGGGGACGACGGAGCCGG
TCGCGCCACCTACAGCAACGGCAACAACCGGGCCGGCGGCGGCGCCTACG
GTAACGGCAACAACCGGGCCGGTTGCGCCACCTACGACAGCGGCAACAAC
CGAACCGGCAGGGACCGACCCACCCACAATTGTTTTGAGTTCGCCTTCCC
CTGGCACCGCCCCACCTCAAGTGTCCGTCCCGACTGCAAGCACGACGTCC
CCGGTAATACAGATAGACCCCCCCACCGCCTCAACAACCTCGTCACCCCT
TTCCGCCCCAAACGCTCCCACGATACCTCCGATCATTCCTACCGCTCTTC
CCGTGGCATCTCCTCCTGATCCTGAACCTGCTACAACGGGACCGGTGGAG
CAGCCTGCTGCCGCCCCTGGAATTCCCACCAATGCCCCTGGGGTCGCACA
GCAGCCGGTGGTGCCGGGGACGACACCGGCACCAGCGCCAGCTGTCGCAC
CGAGCACTCAGCAGATCGCGACGGTCCAGCCTGTGGTCGGACAGCAACCA
AGCGTTTCTCCAGATCGCGACGGTCCAGCCTGTGGTCGGACAGCAACCAA
GCGTTTCTCCAGTAGCGTCGCCGACCGTGACTGTCCCTACGCCAACGGCG
GATCCCATAAGCGTCGTGCCTTCCCCACCCCCAGCTCCCATCGCCCTGGT
ACCCTCTCCCCCCCCCGCGCCCGCGGCGGCGGTAACCGGTACCGCTTCCC
CGGCCGTTCCCCCCGGAACGCCGACGGCGCCGCCCGCGGCGGGACCTCCT
ACCGCCGTTGTTCCGACCTCGCAGCCTGGTGCCGTGGTTCCTGGCCAGCC
AACCCTCCAGCCCCTTCTTCCCGGACAATCCCCCACCGTCGCCACCACCC
CGCCCCTCTTGCCGGGGCAGACCGCCGCCCCCGTCGCCAGGGATGTTCCC
ACCACACCCCTTGTTCCCACCGCCGCCCCCATCGCCGGCGGCACCGCCCG
CCCGGCCGTAGCAGGTCCCGTAGGCGCCACCGTGCCGCCCGCTGTCGCGC
CGTTGCAGCCGACTATGTCGCCGATCGTTGGGGCTCCCACCATCCGCTAG
CGTCGCCGACCGTGACTGTCCCTACGCCAACGGCGGATCCCATAAGCGTC
GTGCCTTCCCCACCCCCAGCTCCCATCGCCCTGGTACCCTCTCCCCCCCC
CGCGCCCGCGGCGGCGGTAACCGGTACCGCTTCCCCGGCCGTTCCCCCCG
GAACGCCGACGGCGCCGCCCGCGGCGGGACCTCCTACCGCCGTTGTTCCG
ACCTCGCAGCCTGGTGCCGTGGTTCCTGGCCAGCCAACCCTCCAGCCCCT
TCTTCCCGGACAATCCCCCACCGTCGCCACCACCCCGCCCCTCTTGCCGG
GGCAGACCGCCGCCCCCGTCGCCAGGGATGTTCCCACCACACCCCTTGTT
CCCACCGCCGCCCCCATCGCCGGCGGCACCGCCCGCCCGGCCGTAGCAGG
TCCCGTAGGCGCCACCGTGCCGCCCGCTGTCGCGCCGTTGCAGCCGACTA
TGTCGCCGATCGTTGGGGCTCCCACCATCCGC
back to top