mRNA_H-canaliculatus_F_contig10967.885.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig10967.885.1
Unique NamemRNA_H-canaliculatus_F_contig10967.885.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
[Close]
BLAST of mRNA_H-canaliculatus_F_contig10967.885.1 vs. uniprot
Match: A0A6H5KL43_9PHAE (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KL43_9PHAE)

HSP 1 Score: 121 bits (303), Expect = 4.780e-31
Identity = 58/121 (47.93%), Postives = 82/121 (67.77%), Query Frame = -3 
Query:   25 AMSYQNMWPECFRWMSFAHNMCAEVTKTEKRSPELKLFGKRVTQLVLPYMMPG--HRHDPQQEHKLASKGAPCFFLGPGENHSSKTLKIILPSGAVTYSAHVTFGFYRRPFTTSDPAWGQQ 381
            A+S++ +WPE F WM+ + N+ AEV+K +KR PE+KL+G+R  +++LP+MM G  HRH P + H   SKG  CF+L  G++HSS T KII P+G  TYS H TFGF  + F     +WG +
Sbjct:  179 ALSFRAIWPEAFAWMNDSLNIAAEVSKEDKRCPEVKLYGRRRIRVLLPFMMHGFRHRHRPSKMH---SKGERCFYLNSGQDHSSTTHKIITPAGVPTYSEHCTFGFSSQGFRGDGRSWGSE 296
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BLAST of mRNA_H-canaliculatus_F_contig10967.885.1 vs. uniprot
Match: A0A6H5KAC2_9PHAE (Integrase catalytic domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAC2_9PHAE)

HSP 1 Score: 122 bits (306), Expect = 8.740e-30
Identity = 58/121 (47.93%), Postives = 82/121 (67.77%), Query Frame = -3 
Query:   25 AMSYQNMWPECFRWMSFAHNMCAEVTKTEKRSPELKLFGKRVTQLVLPYMMPG--HRHDPQQEHKLASKGAPCFFLGPGENHSSKTLKIILPSGAVTYSAHVTFGFYRRPFTTSDPAWGQQ 381
            A+S++ +WPE F WM+ + N+ AEV+K +KR PE+KL+G+R  +++LP+MMPG  HRH P + H   SKG  CF+L  G++HSS T KII P+G  TY  H TFGF  + F     +WG +
Sbjct:  884 ALSFRAIWPEAFAWMNDSLNIAAEVSKEDKRCPEVKLYGRRRIRVLLPFMMPGFRHRHRPSKMH---SKGERCFYLNSGQDHSSTTHKIITPAGVPTYYEHCTFGFSSQGFLGDGRSWGSE 1001
[Close]
BLAST of mRNA_H-canaliculatus_F_contig10967.885.1 vs. uniprot
Match: A0A6H5K5C3_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5C3_9PHAE)

HSP 1 Score: 119 bits (299), Expect = 6.580e-29
Identity = 61/127 (48.03%), Postives = 75/127 (59.06%), Query Frame = -3 
Query:    1 AMSYQNMWPECFRWMSFAHNMCAEVTKTEKRSPELKLFGKRVTQLVLPYMMPGHRHDPQQEHKLASKGAPCFFLGPGENHSSKTLKIILPSGAVTYSAHVTFGFYRRPFTTSDPAWGQQEIPSTRPW 381
            A SYQ MWPE   WM+ A N  AE  K   RSPE K +G R T LV  YMMPG RH  + + K+ SKG    +L    +HS +T K++LPSG V YS+HVTFG+ R PF    P WG   +  + PW
Sbjct:   68 AKSYQAMWPEIVTWMNDAVNTSAEARKKGTRSPEFKTWGARRTNLVQWYMMPGFRHHDRAK-KMVSKGRRVVYLNNEIDHSPRTNKVLLPSGLVAYSSHVTFGYRRHPFVGEVPTWGSGAVQYSMPW 193
[Close]
BLAST of mRNA_H-canaliculatus_F_contig10967.885.1 vs. uniprot
Match: A0A6H5KAQ1_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAQ1_9PHAE)

HSP 1 Score: 119 bits (297), Expect = 1.380e-28
Identity = 57/121 (47.11%), Postives = 81/121 (66.94%), Query Frame = -3 
Query:   25 AMSYQNMWPECFRWMSFAHNMCAEVTKTEKRSPELKLFGKRVTQLVLPYMMPG--HRHDPQQEHKLASKGAPCFFLGPGENHSSKTLKIILPSGAVTYSAHVTFGFYRRPFTTSDPAWGQQ 381
            A+S++ +WPE F WM+ + N+ AEV+K +KR PE+KL G+R  +++LP++ PG  HRH P + H   SKG  CF+L  G++HSS T KII P+G  TYS H TFGF  + F     +WG +
Sbjct:  134 ALSFRAIWPEAFAWMNDSLNIAAEVSKEDKRCPEVKLCGRRRIRVLLPFITPGFRHRHRPSKMH---SKGERCFYLNSGQDHSSTTHKIITPAGVPTYSEHCTFGFSSQGFRGDGRSWGSE 251
[Close]
BLAST of mRNA_H-canaliculatus_F_contig10967.885.1 vs. uniprot
Match: A0A6H5LEE5_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LEE5_9PHAE)

HSP 1 Score: 115 bits (289), Expect = 1.480e-27
Identity = 55/106 (51.89%), Postives = 76/106 (71.70%), Query Frame = -3 
Query:   70 AMSYQNMWPECFRWMSFAHNMCAEVTKTEKRSPELKLFGKRVTQLVLPYMMPG--HRHDPQQEHKLASKGAPCFFLGPGENHSSKTLKIILPSGAVTYSAHVTFGF 381
            A+S++ +WPE F WM+ + N+ AEV+K +KR PE+KL+G+R  +++LP+MMPG  HRH P + H   SK   C +L  G++HSSKT KII P+G  TYS H TFGF
Sbjct:  378 ALSFRAIWPEAFAWMNDSLNIAAEVSKEDKRCPEVKLYGRRRIRVLLPFMMPGFRHRHRPPKMH---SKWERCLYLNSGQDHSSKTHKIITPAGVPTYSEHCTFGF 480
[Close]
BLAST of mRNA_H-canaliculatus_F_contig10967.885.1 vs. uniprot
Match: A0A6H5L922_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L922_9PHAE)

HSP 1 Score: 112 bits (280), Expect = 2.670e-26
Identity = 56/119 (47.06%), Postives = 76/119 (63.87%), Query Frame = -3 
Query:   31 AMSYQNMWPECFRWMSFAHNMCAEVTKTEKRSPELKLFGKRVTQLVLPYMMPG--HRHDPQQEHKLASKGAPCFFLGPGENHSSKTLKIILPSGAVTYSAHVTFGFYRRPFTTSDPAWG 381
            A+S++ MWPE   WM+    + AEV+K +KR PE+KL+G+R  +L+LP+MMPG  HRH P + H   SKG  CF+L  G++HS  T KII P+   TYS H TF F  + F     +WG
Sbjct:  414 ALSFRAMWPEALAWMNDCLAIAAEVSKEDKRCPEVKLYGRRRIRLLLPFMMPGFRHRHRPSKMH---SKGERCFYLNSGQDHSCTTHKIITPARVPTYSEHCTFDFSCQDFRGDGCSWG 529
[Close]
BLAST of mRNA_H-canaliculatus_F_contig10967.885.1 vs. uniprot
Match: A0A6H5JN93_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JN93_9PHAE)

HSP 1 Score: 108 bits (270), Expect = 6.080e-25
Identity = 51/99 (51.52%), Postives = 72/99 (72.73%), Query Frame = -3 
Query:   91 AMSYQNMWPECFRWMSFAHNMCAEVTKTEKRSPELKLFGKRVTQLVLPYMMPG--HRHDPQQEHKLASKGAPCFFLGPGENHSSKTLKIILPSGAVTYS 381
            A+S++ +WPE F WM+ + N+ AEV+K +KR PE+KL+G+R  +++LP+MMPG  HRH P + H   SKG  CF+L  G++HSS T KII P+G  TYS
Sbjct:  628 ALSFRAIWPEAFAWMNDSLNIAAEVSKEDKRCPEVKLYGRRRIRVLLPFMMPGFRHRHRPSKMH---SKGGRCFYLNSGQDHSSTTHKIITPAGVPTYS 723
[Close]
BLAST of mRNA_H-canaliculatus_F_contig10967.885.1 vs. uniprot
Match: A0A6H5KGR0_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGR0_9PHAE)

HSP 1 Score: 102 bits (254), Expect = 1.510e-24
Identity = 51/107 (47.66%), Postives = 71/107 (66.36%), Query Frame = -3 
Query:   25 MSFAHNMCAEVTKTEKRSPELKLFGKRVTQLVLPYMMPG--HRHDPQQEHKLASKGAPCFFLGPGENHSSKTLKIILPSGAVTYSAHVTFGFYRRPFTTSDPAWGQQ 339
            M+ + N+ AEV+K +KR PE+KL+G+   +++LP+MMPG  HRH P + H   SKG  CF+L  G++HSS T KII P+G  TYS H TFGF  + F     +WG +
Sbjct:    1 MNDSLNIAAEVSKGDKRRPEVKLYGRSRIRVLLPFMMPGFRHRHRPSKMH---SKGERCFYLNSGQDHSSTTHKIITPAGVPTYSEHCTFGFSSQGFRGDGRSWGSE 104
[Close]
BLAST of mRNA_H-canaliculatus_F_contig10967.885.1 vs. uniprot
Match: A0A6H5JBM3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBM3_9PHAE)

HSP 1 Score: 105 bits (263), Expect = 5.180e-24
Identity = 50/99 (50.51%), Postives = 70/99 (70.71%), Query Frame = -3 
Query:   91 AMSYQNMWPECFRWMSFAHNMCAEVTKTEKRSPELKLFGKRVTQLVLPYMMPG--HRHDPQQEHKLASKGAPCFFLGPGENHSSKTLKIILPSGAVTYS 381
            A+S++ +WPE F WM+ + N+ AEV+K +KR PE+KL+G+R  +++LP+MMPG  HRH P   H   SKG  CF+L  G++HSS T KI  P+G  TYS
Sbjct:  699 ALSFRAIWPEAFAWMNDSLNIAAEVSKEDKRCPEVKLYGRRRIRVLLPFMMPGFRHRHRPSTMH---SKGERCFYLNSGQDHSSTTYKISTPTGVPTYS 794
[Close]
BLAST of mRNA_H-canaliculatus_F_contig10967.885.1 vs. uniprot
Match: A0A6H5KBJ6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBJ6_9PHAE)

HSP 1 Score: 98.2 bits (243), Expect = 2.700e-21
Identity = 49/106 (46.23%), Postives = 67/106 (63.21%), Query Frame = -3 
Query:   70 AMSYQNMWPECFRWMSFAHNMCAEVTKTEKRSPELKLFGKRVTQLVLPYMMPG--HRHDPQQEHKLASKGAPCFFLGPGENHSSKTLKIILPSGAVTYSAHVTFGF 381
            A+S+  +WPE F WM+ + N+ AE++K +KR PE+KL+G           MPG  HRH P + H  A +   CF+L  G++HSS T KII+P+G  TYS H TFGF
Sbjct:  616 ALSFWAIWPEAFAWMNDSLNIAAEMSKEDKRCPEVKLYG-----------MPGFRHRHRPSKMHSKAER---CFYLNSGQDHSSTTHKIIMPAGVPTYSEHCTFGF 707
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig10967.885.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 13
Match NameE-valueIdentityDescription
A0A6H5KL43_9PHAE4.780e-3147.93Integrase catalytic domain-containing protein (Fra... [more]
A0A6H5KAC2_9PHAE8.740e-3047.93Integrase catalytic domain-containing protein n=2 ... [more]
A0A6H5K5C3_9PHAE6.580e-2948.03Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KAQ1_9PHAE1.380e-2847.11Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5LEE5_9PHAE1.480e-2751.89Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5L922_9PHAE2.670e-2647.06Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JN93_9PHAE6.080e-2551.52Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KGR0_9PHAE1.510e-2447.66Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5JBM3_9PHAE5.180e-2450.51Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KBJ6_9PHAE2.700e-2146.23Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig10967contigH-canaliculatus_F_contig10967:2215..2597 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size384
Cds size336
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928767.911248-CDS-H-canaliculatus_F_contig10967:2214..25501622928767.911248-CDS-H-canaliculatus_F_contig10967:2214..2550Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10967 2215..2550 +
1696845556.279803-CDS-H-canaliculatus_F_contig10967:2214..25501696845556.279803-CDS-H-canaliculatus_F_contig10967:2214..2550Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10967 2215..2550 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928767.9341645-UTR-H-canaliculatus_F_contig10967:2550..25971622928767.9341645-UTR-H-canaliculatus_F_contig10967:2550..2597Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig10967 2551..2597 +
1696845556.2909632-UTR-H-canaliculatus_F_contig10967:2550..25971696845556.2909632-UTR-H-canaliculatus_F_contig10967:2550..2597Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig10967 2551..2597 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig10967.885.1prot_H-canaliculatus_F_contig10967.885.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig10967 2215..2550 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig10967.885.1

>prot_H-canaliculatus_F_contig10967.885.1 ID=prot_H-canaliculatus_F_contig10967.885.1|Name=mRNA_H-canaliculatus_F_contig10967.885.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=112bp
PRTSGRDLLLPPGGVARSERPPVKAKSDVGGVSYRARRQDDLERLRGVVL
PWAEEEARRPLARQLVLLLGIVAVSRHHVRQNQLSYTLAEQLQLGASFLS
LGHLGTHVVRE*
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mRNA from alignment at H-canaliculatus_F_contig10967:2215..2597+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig10967.885.1 ID=mRNA_H-canaliculatus_F_contig10967.885.1|Name=mRNA_H-canaliculatus_F_contig10967.885.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=383bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10967:2215..2597+ (Hapterophycus canaliculatus Oshoro5f female)
CCACGGACGAGTGGAAGGGATCTCCTGTTGCCCCCAGGCGGGGTCGCTCG
TAGTGAACGGCCGCCGGTAAAAGCCAAAAGTGACGTGGGCGGAGTAAGTT
ACCGCGCCCGAAGGCAGGATGATCTTGAGCGTCTTAGAGGAGTGGTTCTC
CCCTGGGCCGAGGAAGAAGCACGGCGCCCCCTTGCTCGCCAGCTTGTGCT
CCTGCTGGGGATCGTGGCGGTGTCCCGGCATCATGTACGGCAGAACCAGT
TGAGTTACACGCTTGCCGAACAGCTTCAGCTCGGGGCTTCGTTTCTCAGT
CTTGGTCACCTCGGCACACATGTTGTGCGCGAATGACATCCAGCGAAAAC
ACTCGGGCCACATGTTCTGATAGGACATGGCGC
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig10967:2215..2597+

>mRNA_H-canaliculatus_F_contig10967.885.1 ID=mRNA_H-canaliculatus_F_contig10967.885.1|Name=mRNA_H-canaliculatus_F_contig10967.885.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=672bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10967:2215..2597+ (Hapterophycus canaliculatus Oshoro5f female)
CCACGGACGAGTGGAAGGGATCTCCTGTTGCCCCCAGGCGGGGTCGCTCG
TAGTGAACGGCCGCCGGTAAAAGCCAAAAGTGACGTGGGCGGAGTAAGTT
ACCGCGCCCGAAGGCAGGATGATCTTGAGCGTCTTAGAGGAGTGGTTCTC
CCCTGGGCCGAGGAAGAAGCACGGCGCCCCCTTGCTCGCCAGCTTGTGCT
CCTGCTGGGGATCGTGGCGGTGTCCCGGCATCATGTACGGCAGAACCAGT
TGAGTTACACGCTTGCCGAACAGCTTCAGCTCGGGGCTTCGTTTCTCAGT
CTTGGTCACCTCGGCACACATGTTGTGCGCGAATGACCACGGACGAGTGG
AAGGGATCTCCTGTTGCCCCCAGGCGGGGTCGCTCGTAGTGAACGGCCGC
CGGTAAAAGCCAAAAGTGACGTGGGCGGAGTAAGTTACCGCGCCCGAAGG
CAGGATGATCTTGAGCGTCTTAGAGGAGTGGTTCTCCCCTGGGCCGAGGA
AGAAGCACGGCGCCCCCTTGCTCGCCAGCTTGTGCTCCTGCTGGGGATCG
TGGCGGTGTCCCGGCATCATGTACGGCAGAACCAGTTGAGTTACACGCTT
GCCGAACAGCTTCAGCTCGGGGCTTCGTTTCTCAGTCTTGGTCACCTCGG
CACACATGTTGTGCGCGAATGA
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