mRNA_H-canaliculatus_F_contig10962.883.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig10962.883.1
Unique NamemRNA_H-canaliculatus_F_contig10962.883.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig10962.883.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig10962contigH-canaliculatus_F_contig10962:2627..3149 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size525
Cds size414
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928767.7125907-CDS-H-canaliculatus_F_contig10962:2626..30401622928767.7125907-CDS-H-canaliculatus_F_contig10962:2626..3040Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10962 2627..3040 +
1696845556.1930184-CDS-H-canaliculatus_F_contig10962:2626..30401696845556.1930184-CDS-H-canaliculatus_F_contig10962:2626..3040Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10962 2627..3040 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928767.7253532-UTR-H-canaliculatus_F_contig10962:3040..31491622928767.7253532-UTR-H-canaliculatus_F_contig10962:3040..3149Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig10962 3041..3149 +
1696845556.2014992-UTR-H-canaliculatus_F_contig10962:3040..31491696845556.2014992-UTR-H-canaliculatus_F_contig10962:3040..3149Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig10962 3041..3149 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig10962.883.1prot_H-canaliculatus_F_contig10962.883.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig10962 2627..3040 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig10962.883.1

>prot_H-canaliculatus_F_contig10962.883.1 ID=prot_H-canaliculatus_F_contig10962.883.1|Name=mRNA_H-canaliculatus_F_contig10962.883.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=138bp
YPYLGGGGGGKRILKILAVYPYVFGGLPLSSFTGPRGLGARGIHRPTLTV
DAVKTVQANTHACKRAHDERSGISCSSVPTTLTAVISLVSGQTRQWVPKP
VPNTQIHTQTPHTHKYTHTKRSPCHTRLYISSCERKP*
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mRNA from alignment at H-canaliculatus_F_contig10962:2627..3149+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig10962.883.1 ID=mRNA_H-canaliculatus_F_contig10962.883.1|Name=mRNA_H-canaliculatus_F_contig10962.883.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=523bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10962:2627..3149+ (Hapterophycus canaliculatus Oshoro5f female)
TACCCTTATTTGGGGGGGGGGGGTGGTGGTAAACGAATCCTAAAGATTTT
GGCGGTTTATCCTTATGTTTTTGGCGGTTTACCCTTGTCTTCTTTTACAG
GTCCGCGGGGATTGGGGGCTCGTGGGATTCATCGGCCGACTTTGACGGTC
GATGCCGTCAAAACCGTACAAGCCAATACGCACGCCTGTAAACGCGCACA
TGATGAACGTAGCGGCATTTCTTGCAGTTCAGTCCCAACGACACTGACCG
CCGTTATTTCCTTGGTCAGCGGCCAAACACGGCAGTGGGTGCCAAAACCC
GTGCCGAACACACAGATACACACACAAACACCTCACACGCACAAATACAC
GCACACCAAACGGTCCCCATGCCATACCCGTCTCTACATCTCATCTTGCG
AAAGGAAGCCTTGACCGCCTCTTTGCTTGTAGTCGGGAAGGGAAGCAAGG
ATTTCGCGCCTTACCTTCTTCTACGAGATCTCCGACGAATTGCTTCGCCA
TCGACGCCACGGCTATGGTGGAG
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig10962:2627..3149+

>mRNA_H-canaliculatus_F_contig10962.883.1 ID=mRNA_H-canaliculatus_F_contig10962.883.1|Name=mRNA_H-canaliculatus_F_contig10962.883.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=828bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10962:2627..3149+ (Hapterophycus canaliculatus Oshoro5f female)
TACCCTTATTTGGGGGGGGGGGGTGGTGGTAAACGAATCCTAAAGATTTT
GGCGGTTTATCCTTATGTTTTTGGCGGTTTACCCTTGTCTTCTTTTACAG
GTCCGCGGGGATTGGGGGCTCGTGGGATTCATCGGCCGACTTTGACGGTC
GATGCCGTCAAAACCGTACAAGCCAATACGCACGCCTGTAAACGCGCACA
TGATGAACGTAGCGGCATTTCTTGCAGTTCAGTCCCAACGACACTGACCG
CCGTTATTTCCTTGGTCAGCGGCCAAACACGGCAGTGGGTGCCAAAACCC
GTGCCGAACACACAGATACACACACAAACACCTCACACGCACAAATACAC
GCACACCAAACGGTCCCCATGCCATACCCGTCTCTACATCTCATCTTGCG
AAAGGAAGCCTTGATACCCTTATTTGGGGGGGGGGGGTGGTGGTAAACGA
ATCCTAAAGATTTTGGCGGTTTATCCTTATGTTTTTGGCGGTTTACCCTT
GTCTTCTTTTACAGGTCCGCGGGGATTGGGGGCTCGTGGGATTCATCGGC
CGACTTTGACGGTCGATGCCGTCAAAACCGTACAAGCCAATACGCACGCC
TGTAAACGCGCACATGATGAACGTAGCGGCATTTCTTGCAGTTCAGTCCC
AACGACACTGACCGCCGTTATTTCCTTGGTCAGCGGCCAAACACGGCAGT
GGGTGCCAAAACCCGTGCCGAACACACAGATACACACACAAACACCTCAC
ACGCACAAATACACGCACACCAAACGGTCCCCATGCCATACCCGTCTCTA
CATCTCATCTTGCGAAAGGAAGCCTTGA
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