mRNA_H-canaliculatus_F_contig1096.882.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female
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Overview
Homology
BLAST of mRNA_H-canaliculatus_F_contig1096.882.1 vs. uniprot
Match: D8LJ54_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJ54_ECTSI) HSP 1 Score: 767 bits (1980), Expect = 3.980e-257 Identity = 573/1012 (56.62%), Postives = 633/1012 (62.55%), Query Frame = 1
Query: 1036 VVLLDLFAACARGSPHFRQYVKGLRRKRELFRRLLGLLGPRCDSEIVVRALCALTRVLAGDPLEGKVFDRGNALETASLVMDTLLDLSGCS---------TGRIGEATGGASRAXXXXXXXXXXXXXALGEQRRYADVASDLARSRVFTSVLLDTGRLASFLREAVAVLEAAAADVSGRLSIDAVGGPVGRGADGEGGEAHLSPLFAGRGKSQQQQQRARRATRPEPLLRSLCSFCLEHSPARSTFIRALLDGGNGGRSKGGDDKGTLPARAAARHGGGNGAGAADPCAALFALCLHPHPPSXXXXXXLLQCLLVGGGALGAVSGPSAGAAAGVGVIPAGFILTPMDGGGSGGNGGGDVWAGAA---GIGREDPLQAALLDRIGAVALGTIDGGYHRQPQRPRSTGRSGGGGRCGXXXXXXXXDSSCSEGSR--NDDDDEYDENEDDEWFGLEIPVGLTAASARSEAKSVPASSATVPGALTHLILRLRQLGADLASAQAKQQLGTLGAGKAAARMALGAAGALRAPGGLKARAVEMEQELTSVLCLLSSLTLAIPAAGCALARALPLEATLVPILAAQRGVLAGADPVDYPRAPVEIVLVSLTLIAQLGMELGRVSGGXXXXXXXXXXXXXXXXXXXXXXXXXX-----------GRRDAARAARLRRFLGEQAAAGEVKLCLGHAACRAESKDLARRASALISLLQAGGGADALLVADSLYAFAQAAESREADLRSRAAXXXXXXXXXXXXXXXXXXXXXXXXXLVEQIEARNAEDLRRLSDQESSARRRIEEAHARALTRGEVSLRRSAETVGDVERVLQSKEEALRCAGRECRAKDLEIASLKGDLAGEQRLRAAVTAKLEEACSKRDELSRGKAEAESVLDATKEELSKALEQGLAAEQGWGVESDSAAKGWAAAKDAEEELERSNGRTEEAYGKLILLARGYKTLEENSRCKAVEAARLLVEAEAENKRLKEQAREEQRRHRLTKAAVQDGEEALQRVSVPLFSLS 3996
+V+LDLFAACARGSPHFRQYVKGLRRKRELFRRLLGLLGP CD +IVVRALCALTRVLAGDPLEGKVFDRGNALETASLV+D LLDLS CS T R G A G S LGEQRR+ADVASDLARS QCLLVGGGALGAVSGPS GAAAGVGVIPAGF+L P G G WA AA GIGREDPLQAALL+RIGAVALG GG H + R + GR GG G S S+GS DD + DE GLE P GL A++ E G L+ L+LRLRQ+G DLASAQAKQ+LG AAR A + A A G LKARAVEME ELTSVLCLLSSL LA+PAAG ALARALPLEA P+LAAQR VL G DP D+ RAPVEIVLVSLTLIAQLG+EL GG XXXXXXXXXX GR+DAARAARLRRFLGEQAAAGEVKLCLGHAACRAESKDLARRA+ALISLLQAGGGADALLVADSLYAFAQAAE+RE +LRSRAAXXXXXXXXXXXXXXXXXXXXXXX LV QIE+RNAED+RRLS+QE+ ARRR+E++HARA+ RGEVSLRR+ E V D+ERVL SKEEAL CAGRE RAKDLEIA+L+GDLAGEQRLRAAVT KLE A ++RDELSRGKAEAE+ L+A KEELSK E+GL + +GW E +AA+GWAAA++AEE LE SNGR EE YGKLILLARGYK LEE+SRC+AVE RLLVE+E++ K L+EQAREE+RRHRLTKAA +DGE +L+R L +S
Sbjct: 1 MVVLDLFAACARGSPHFRQYVKGLRRKRELFRRLLGLLGPMCDGKIVVRALCALTRVLAGDPLEGKVFDRGNALETASLVIDNLLDLSVCSERVVCVDNLTPRHGGAGAGGS--------------GRLGEQRRFADVASDLARS---------------------------------------------------------------------------------------------------------------------------------------------------------------------QCLLVGGGALGAVSGPSTGAAAGVGVIPAGFLLGPT--------GVGVSWAAAAASAGIGREDPLQAALLERIGAVALG---GGRHSK--RTPAAGRGGG---AGVRRADGSRSSDESDGSEYAGIDDGDGDERSFGCGSGLEHPAGLADAASFFEGPG---------GGLSLLVLRLRQIGGDLASAQAKQKLGLSSPSLVAARPAWPVSAATGA-GALKARAVEMELELTSVLCLLSSLALAVPAAGRALARALPLEAAFGPVLAAQRCVLCGTDPADFSRAPVEIVLVSLTLIAQLGVELSGTGGGSGDAQSSGDDITASEAXXXXXXXXXXXXXXXXXXXXQGRQDAARAARLRRFLGEQAAAGEVKLCLGHAACRAESKDLARRAAALISLLQAGGGADALLVADSLYAFAQAAEAREGELRSRAAXXXXXXXXXXXXXXXXXXXXXXXEGLVAQIESRNAEDIRRLSEQENGARRRLEDSHARAVRRGEVSLRRAEENVADLERVLSSKEEALGCAGREARAKDLEIAALRGDLAGEQRLRAAVTVKLEAASAERDELSRGKAEAEAFLEALKEELSKVREEGLVSSKGWEDERANAARGWAAAREAEEGLELSNGRVEEVYGKLILLARGYKGLEEDSRCQAVEGERLLVESESKTKLLQEQAREEERRHRLTKAAAKDGEASLRRAEQRLAKVS 807
BLAST of mRNA_H-canaliculatus_F_contig1096.882.1 vs. uniprot
Match: A0A6H5KYR5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KYR5_9PHAE) HSP 1 Score: 723 bits (1867), Expect = 7.590e-241 Identity = 548/964 (56.85%), Postives = 599/964 (62.14%), Query Frame = 1
Query: 7 SNDEEDELLRSFLEELGNAEPNLQTFVFTPSAAEETQKDNPPRASVNGDFQQQRVEHAATPQTAWTAGALRSKLRELSALHVSEEGPPPRAIS--PASFAPPPRPGLVYAAVDALVRLVTRLLPLADPAATGLTRGARPMPPXXXXXRRRQQRSELARSLLELALLCLATLLERPSWRHVFFRVLHEVQLEQKXXXXXXXXXXLRASNSGADDGGRPCTIMANASFLQEYLWRRIVADAPAPAGGGAAKSGTDPPSAAKTPASPRPVPAVDRAAVRLCCSMVRHRPLSFSASSYASLAPYLVDYLLDGXXXXXXXXXXXXXXXXXXXXXXXXGKGN---GEPATQGQLVVLLDLFAACARGSPHFRQYVKGLRRKRELFRRLLGLLGPRCDSEIVVRALCALTRVLAGDPLEGKVFDRGNALETASLVMDTLLDLSGCS---------TGRIGEATGGASRAXXXXXXXXXXXXXALGEQRRYADVASDLARSRVFTSVLLDTGRLASFLREAVAVLEAAAADVSGRLSIDAVGGPVGRGADGEGGEAHLSPLFAGRGKSQQQQQRARRATRPEPLLRSLCSFCLEHSPARSTFIRALLDGGNGGRSKGGDDKGTLPARAAARHGGGNGAGAADPCAALFALCLHPHPPSXXXXXXLLQCLLVGGGALGAVSGPSAGAAAGVGVIPAGFILTPMDGGGSGGNGGGDVW--AGAAGIGREDPLQAALLDRIGAVALGTIDGGYHRQPQRPRSTGRSGGGGRCGXXXXXXXXDSSCSEGSRNDDDDEYDENEDDEWFGLEIPVGLTAASARSEAKSVPASSATVPGALTHLILRLRQLGADLASAQAKQQLGTLGAGKAAARMALGAAGALRAPGGLKARAVEMEQELTSVLCLLSSLTLAIPAAGCALARALPLEATLVPILAAQRGVLAGADPVDYPRAPVEIVLVSLTLIAQLGMELGRVSGG 2850
S DEE++LLRSFL E+ +AEP+LQTF+ S E T P S +G +QQ AA TAWTAG LR KLRELSALHVS++GP P A+FA PGLVYAA+DALVRLV RLL L D A++ T P ++ + SL++L LLCLA L E PSWRHVFFRVLHEVQLEQ+ S G LQEYLWRR+V A GGAA S P SP P PAV AAVRLCCSMVRH PLSFSASSYASLAPYL +YLL XXXXXXXXXXXXXXXXXXXX + N G Q L+V+LDLFAACARGSPHFRQYVKGLRRKRELFRRLLGLLGP CD IVVRALCALTRVLAGDPLEGKVFDRGNALETASLV+D LLDLSG S T + G A G R LGEQRR+ADVAS+LARS+VFTSVL+DTGRLASFL EAVAVL AAADV GRLS D G Q+ TRPEPLLR+LCSFCLEHSPARSTFI+ALLD A ADPCAALF LCLHPH PS LLQCLLVGGGALGAVSGPS GAAAGVGVIPAGF+L P G G W A AAGIGREDPLQAALL+RIGAVALG GG H + + GR GG XXXXXXXX DE GLE P GL A++ E G L+ L+LRLRQ+G DLASAQAKQQLG AAR A + A+ A G LKARAVEME ELTSVLCLLSSL LA+PAAG ALARALPLEA P+LAAQR VL+G DP D+PRAPVEIVLVSLTLIAQLG++L GG
Sbjct: 2 SPDEEEDLLRSFLNEVADAEPSLQTFLSRRSKHEGT-----PGNSGDGSARQQGQREAAQ-LTAWTAGPLRRKLRELSALHVSDDGPSPGGTGGVSAAFAVAASPGLVYAALDALVRLVLRLLLLVDAASSDAT-------PTLLSPKQESADALPLASLVDLTLLCLANLAESPSWRHVFFRVLHEVQLEQQH------------SRGGXXXXXXXXXXXXXXXXLQEYLWRRVVV-ADRTTAGGAAMSEARP--------SP-PAPAVHLAAVRLCCSMVRHCPLSFSASSYASLAPYLTEYLLGEGGXXXXXXXXXXXXXXXXXXXXSSSRSNDSKGGWGAQTDLMVVLDLFAACARGSPHFRQYVKGLRRKRELFRRLLGLLGPMCDGRIVVRALCALTRVLAGDPLEGKVFDRGNALETASLVIDNLLDLSGYSERVACVDSLTPKHGRAGAGRGR---------------LGEQRRFADVASELARSQVFTSVLVDTGRLASFLGEAVAVLARAAADVFGRLSTDIAAA----------GTXXXXXXXXXXXXXXXQED----TTRPEPLLRALCSFCLEHSPARSTFIQALLDSSGXXXXXXXXXXXXXXXXTLA----------ADPCAALFVLCLHPHTPSAAAASTLLQCLLVGGGALGAVSGPSTGAAAGVGVIPAGFLLGPT--------GVGVSWTAAAAAGIGREDPLQAALLERIGAVALG---GGRHSK--WTPAAGR-GGDXXXXXXXXXXXXXXXXXXXXXXXXXXXGDERSFRCGSGLEHPAGLADAASNFEGPG---------GGLSLLVLRLRQIGGDLASAQAKQQLGLSSPSLVAARPAWPLSAAIGA-GVLKARAVEMELELTSVLCLLSSLALAVPAAGRALARALPLEAAFAPVLAAQRCVLSGTDPADFPRAPVEIVLVSLTLIAQLGVKLSGTGGG 867
BLAST of mRNA_H-canaliculatus_F_contig1096.882.1 vs. uniprot
Match: A0A6H5KYP7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KYP7_9PHAE) HSP 1 Score: 160 bits (404), Expect = 1.550e-39 Identity = 92/140 (65.71%), Postives = 115/140 (82.14%), Query Frame = 1
Query: 3577 ELSRGKAEAESVLDATKEELSKALEQGLAAEQGWGVESDSAAKGWAAAKDAEEELERSNGRTEEAYGKLILLARGYKTLEENSRCKAVEAARLLVEAEAENKRLKEQAREEQRRHRLTKAAVQDGEEALQRVSVPLFSLS 3996
+LSRGKAEAE+ L+A KEELSK E+GL + +GW E +AA+GWAAA++AEE L+ SNGR EE YGKLILLARGYK+LEE+SRC+AVE RLLVE+E++ K L+EQAREE+RRHRLTKAAV+DGE +L+R L +S
Sbjct: 46 QLSRGKAEAEAFLEALKEELSKVREEGLVSSKGWEDERANAARGWAAAREAEEGLKLSNGRIEEVYGKLILLARGYKSLEEDSRCQAVEGERLLVESESKTKLLQEQAREEERRHRLTKAAVKDGEASLRRAEQRLAKVS 185
BLAST of mRNA_H-canaliculatus_F_contig1096.882.1 vs. uniprot
Match: A0A835YU78_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YU78_9STRA) HSP 1 Score: 107 bits (267), Expect = 1.130e-19 Identity = 213/820 (25.98%), Postives = 285/820 (34.76%), Query Frame = 1
Query: 808 VDRAAVRLCCSMVRHRPLSFSASSYASLAPYLVDYLLDGXXXXXXXXXXXXXXXXXXXXXXXXGKGNGEPATQGQLVVLLDLFAACARGSPHFRQYVKGLRRKRELFRRLLGLLGPRCDSEIVVRALCALTRVLAGDPLEGKVFDRGNALETASLVMDTLLDLSGCSTGRIGEATGGASRAXXXXXXXXXXXXXALGEQRRYADVASDLARSRVFTSVLLDTGRLASFLREAVAVLEAAAADVSGRLSIDAVGGPVGRGADGEGGEAHLSPLFAGRGKSQQQQQRARRATRPEPLLRSLCSFCLEHSPARSTFIRALLDGGNGGRSKGGDDKGTLPARAAARHGGGNGAGAADPCAALFALCLHPHPPSXXXXXXLLQCLLVGGGALGAVSGPSAGAAAGVGVIPAGFILTPMDGGGSGGNGGGDVWAGAAGIGREDPLQAALLDRIGAVALGTIDGGYHRQPQRPRSTGRSGGGGRCGXXXXXXXXDSSCSEGSRNDDDDEYDENEDDEWFGLEIPVGLTAASARSEAKSVPASSATVPGALTHLILRLRQLGADLASAQAKQQLGTLGAGKAAARMALGAAGALRAPGGLKARAVEMEQELTSVLCL-----LSSLTLAIPAAGCALARALPLEATLVPILAAQRGVLAGADPVDYPRAPVEIVLVSLTLIAQLGMELGR-----VSGGXXXXXXXXXXXXXXXXXXXXXXXXXXGRR------------DAARAARLRRFLG----EQAAAGEVK-----------LCLGHAACRAESKDLARRASALISLLQAGGGADALLVADSLYAFAQAAESR 3156
+D + RL +++ PL ASSYA+LAP LVD+LL+ G + A GS GL ++ LFR L+G LGP+ +++V R+L ALTR LAGD LE KVF+ NA +TA+L + LLDLSG S + XXXXXXXX L QR ADV DLARS +SVL +G+L F A A L A SP E LL +L ++H+P+R+ I AL+ G D+ P AL AL H H P+ LLQ LL GG A +L GGSG G G A + L++ + A G ++ G +W G L + ++ +GA L + Q+ G+G AA R G+ + PGG+K E++ L S+L L L T+ G L I+ A LA DP+ Y RAPVEI+L+ L A L + GG G D A R + E+ A K LC+ A +A+SK L RRA ALI +LQ+ GGADALL +D+L+AFAQ A +R
Sbjct: 72 IDHVSARLLTHLLQCAPLLLPASSYAALAPPLVDFLLN---------------------------------YSGPVAATAAAQATAGGGSEGDLVIATGLLARKALFRCLMGFLGPQNGTQLVARSLSALTRALAGDQLETKVFEPNNATQTATLAVVKLLDLSGRSCWTL-------------LXXXXXXXXSPLPLQRLCADVVGDLARSPALSSVLDASGQLRDFAARAAAAL------------------------------APYSPSPRHPPADHXXXXXXXXXXXXEALLAALAHLAVDHAPSRAAAIGALV----------GADRA--------------------PLRALAALAAHAHAPTARAACELLQRLLGTGGG-------------------ADTVLLRASSGGSGDGGEGAQGGDALQVALARAADDTLVEGLPVAAAGGSGEASSKENGYQNGLG---------------------------------------DWGXXXXXXXXX------------------HGVLAAALRKVAAIGATLTAVARSQR--PYGSG-AAER------GSAKGPGGMKTEREELDDALQSLLRLGRRSVLKRFTMEHEQGG------------LAAIMDAAAAALADEDPLSYARAPVEILLLVCALAALLCAPTAQHGSSGXXGGVPRARAAQLRQFLSLCASQTEFSLAVGHAAWQPPIACSYDTDIAIMPMYTRVMHYPRHERFAVKRCKPTYSRHRLLRGLCILLPAPQADSKGLTRRAVALIGMLQSRGGADALLASDALFAFAQRAAAR 688 The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1096.882.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90) Total hits: 4
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-canaliculatus_F_contig1096.882.1 >prot_H-canaliculatus_F_contig1096.882.1 ID=prot_H-canaliculatus_F_contig1096.882.1|Name=mRNA_H-canaliculatus_F_contig1096.882.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=1332bp MSSNDEEDELLRSFLEELGNAEPNLQTFVFTPSAAEETQKDNPPRASVNGback to top mRNA from alignment at H-canaliculatus_F_contig1096:21238..30291+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-canaliculatus_F_contig1096.882.1 ID=mRNA_H-canaliculatus_F_contig1096.882.1|Name=mRNA_H-canaliculatus_F_contig1096.882.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=9054bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1096:21238..30291+ (Hapterophycus canaliculatus Oshoro5f female)back to top Coding sequence (CDS) from alignment at H-canaliculatus_F_contig1096:21238..30291+ >mRNA_H-canaliculatus_F_contig1096.882.1 ID=mRNA_H-canaliculatus_F_contig1096.882.1|Name=mRNA_H-canaliculatus_F_contig1096.882.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=7992bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1096:21238..30291+ (Hapterophycus canaliculatus Oshoro5f female)back to top |