mRNA_H-canaliculatus_F_contig10948.873.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig10948.873.1
Unique NamemRNA_H-canaliculatus_F_contig10948.873.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
BLAST of mRNA_H-canaliculatus_F_contig10948.873.1 vs. uniprot
Match: A0A6H5JN56_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JN56_9PHAE)

HSP 1 Score: 551 bits (1420), Expect = 7.800e-181
Identity = 311/398 (78.14%), Postives = 328/398 (82.41%), Query Frame = 1
Query:  100 ARAQKEAAFAKVLKDMMDKRDNAEPGVLQEISWQRVMLDEAHFIKDRSTSTAKAVFALTSLYKWCLTGTPLQNRVGELYSLVRFLRLDPHAFYQCRSKGCDCKSLSYRFGPEWRACEDCGHTPIMHYANFNRHILNPISRTGYVGEGKKAFLRLKREVLDMILLRRTKSNRSNDICLPPRIVRVRQHRLDEREEDFYQALYTQSQAQFDTYVGSGTILNNYAHIFDILIRLRQAVDHPYLVIYSATKREGMTPAMNSAAGQNPAPASTLSPAPAATRETPARGS--RSSRSXXXXXXXXXXXXXXXATPSGGGRPGRSSRGQGDLGDTSSDSEXXXXXXXXXXXXXKGEGARSPVGFGGAAHEEYESSGDEGEED-DLCGICREPAERPVSSACGHSF 1284
            A+A+KEAAFAKVLKDMMDKRD+AEPGVLQEISWQR+MLDEAHFIKDR+TSTAKAVFALTSLY+WCLTGTPLQNRVGELYSLVRFLRLDPHAFYQCRSKGCDCKSL+YRFGPEWRACE+CGHTPIMHYANFNRHILNPISRTGYVGEGKKAFLRLKREVLDMILLRRTKSNRSNDICLPPRIVRVRQHRLDEREEDFYQALYTQSQAQFDTYVG+GTILNNYAHIFDILIRLRQAVDHPYLVI+SATKREGMTPAMNSAAGQNP    T  PAP A  ET  RGS  R+SRS               ++ S   R   +      LGDTSSDS XXXXXXXXXX  X                +E +S G       DLCGICREPAER VSS+CGHSF
Sbjct:  734 AQAKKEAAFAKVLKDMMDKRDSAEPGVLQEISWQRIMLDEAHFIKDRATSTAKAVFALTSLYRWCLTGTPLQNRVGELYSLVRFLRLDPHAFYQCRSKGCDCKSLNYRFGPEWRACEECGHTPIMHYANFNRHILNPISRTGYVGEGKKAFLRLKREVLDMILLRRTKSNRSNDICLPPRIVRVRQHRLDEREEDFYQALYTQSQAQFDTYVGAGTILNNYAHIFDILIRLRQAVDHPYLVIFSATKREGMTPAMNSAAGQNP----TAVPAPPA--ETAPRGSQSRTSRSSTAQANGAATPNGGRSSCSSSSRTATAGTQADILGDTSSDSXXXXXXXXXXXAGXX----XXXXXXXXXXVQECDSDGXXXXXXXDLCGICREPAERLVSSSCGHSF 1121          
BLAST of mRNA_H-canaliculatus_F_contig10948.873.1 vs. uniprot
Match: W7TXY3_9STRA (Snf2 super family n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TXY3_9STRA)

HSP 1 Score: 367 bits (941), Expect = 1.000e-112
Identity = 173/225 (76.89%), Postives = 196/225 (87.11%), Query Frame = 1
Query:  157 RDNAEPGVLQEISWQRVMLDEAHFIKDRSTSTAKAVFALTSLYKWCLTGTPLQNRVGELYSLVRFLRLDPHAFYQCRSKGCDCKSLSYRFGPEWRACEDCGHTPIMHYANFNRHILNPISRTGYVGEGKKAFLRLKREVLDMILLRRTKSNRSNDICLPPRIVRVRQHRLDEREEDFYQALYTQSQAQFDTYVGSGTILNNYAHIFDILIRLRQAVDHPYLVIYS 831
            R  A   V+ E+SW R++LDEAHFIK RSTSTAKAVFALTSL KWCLTGTPLQNRVGELYSLVRFLR+DPHAFY CR KGC+CKSL+YRFGP W  CE CGHTP+ H+A+FNRHILNPI R GY+GEG+KAFL LK E+LD ILLRRTK  RS DI LPPR++++R   +DEREEDFYQALYTQSQAQF+TY+ +GT+LNNYAHIFDILIRLRQAVDHPYLVI+S
Sbjct:  618 RGKATRSVIHELSWFRIILDEAHFIKTRSTSTAKAVFALTSLNKWCLTGTPLQNRVGELYSLVRFLRMDPHAFYFCRMKGCECKSLNYRFGPNWDCCECCGHTPMWHFAHFNRHILNPIQRAGYIGEGRKAFLTLKNEILDPILLRRTKETRSEDIMLPPRLIKLRHDPMDEREEDFYQALYTQSQAQFNTYLQTGTVLNNYAHIFDILIRLRQAVDHPYLVIHS 842          
BLAST of mRNA_H-canaliculatus_F_contig10948.873.1 vs. uniprot
Match: A0A7S3MHT9_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3MHT9_9STRA)

HSP 1 Score: 335 bits (858), Expect = 1.380e-99
Identity = 162/225 (72.00%), Postives = 189/225 (84.00%), Query Frame = 1
Query:  157 RDNAEPGVLQEISWQRVMLDEAHFIKDRSTSTAKAVFALTSLYKWCLTGTPLQNRVGELYSLVRFLRLDPHAFYQCRSKGCDCKSLSYRFGPEWRACEDCGHTPIMHYANFNRHILNPISRTGYVGEGKKAFLRLKREVLDMILLRRTKSNRSNDICLPPRIVRVRQHRLDEREEDFYQALYTQSQAQFDTYVGSGTILNNYAHIFDILIRLRQAVDHPYLVIYS 831
            +  A   VL  +SW R++LDEAH IKDRSTSTAKAVF LTSL KWCLTGTPLQNRVGELYSL+RFLR+DPHAFY CR+KGC CKSL YRF   +  C+DC H+ I HY +FN+HILNPI R+GYV +G++A L+LK++VLD ILLRRTK+ R+ DI LPPR+V VR  +LD +EEDFY ALYTQSQAQF+TY+ SGT+LNNYAHIFDILIRLRQAVDHPYLVIYS
Sbjct:  922 KQGAAVSVLHLVSWFRIILDEAHLIKDRSTSTAKAVFNLTSLNKWCLTGTPLQNRVGELYSLIRFLRVDPHAFYYCRTKGCCCKSLHYRFTKSY--CDDCHHSVIQHYCHFNKHILNPIKRSGYVADGRRAMLKLKQQVLDEILLRRTKTTRAEDIQLPPRVVTVRSEKLDVKEEDFYSALYTQSQAQFNTYLQSGTVLNNYAHIFDILIRLRQAVDHPYLVIYS 1144          
BLAST of mRNA_H-canaliculatus_F_contig10948.873.1 vs. uniprot
Match: A0A836CRA2_9STRA (P-loop containing nucleoside triphosphate hydrolase protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CRA2_9STRA)

HSP 1 Score: 328 bits (841), Expect = 1.510e-99
Identity = 155/210 (73.81%), Postives = 179/210 (85.24%), Query Frame = 1
Query:  190 ISWQRVMLDEAHFIKDRSTSTAKAVFALTSLYKWCLTGTPLQNRVGELYSLVRFLRLDPHAFYQCRSKGCDCKSLSYRFGPEWRACEDCGHTPIMHYANFNRHILNPISRTGYVGEGKKAFLRLKREVLDMILLRRTKSNRSNDICLPPRIVRVRQHRLDEREEDFYQALYTQSQAQFDTYVGSGTILNNYAHIFDILIRLRQAVDHPYL 819
            +SW R++LDEAH IKDRST TAKAVFAL SL K CLTGTPLQNRV ELYS +RFLR+DP A+Y C++KGC CKSL YRFGPE R CE+CGH P+ H   FNR +LNPI R GY+GEG++AF+ LK EVLD ILLRRTK+ RS+DI LPPR+VRVR++RL E+EEDFYQALYTQSQAQFD YV +G +LNNYAHIFDILIRLRQA+DHPYL
Sbjct:  523 VSWFRIILDEAHVIKDRSTGTAKAVFALCSLNKLCLTGTPLQNRVSELYSPIRFLRMDPFAYYVCKAKGCACKSLHYRFGPEGRKCEECGHNPMTHSCTFNRLVLNPIMRAGYIGEGRRAFITLKSEVLDKILLRRTKATRSDDIALPPRVVRVRRYRLSEKEEDFYQALYTQSQAQFDDYVNTGVVLNNYAHIFDILIRLRQALDHPYL 732          
BLAST of mRNA_H-canaliculatus_F_contig10948.873.1 vs. uniprot
Match: A0A7S1FQR8_9STRA (Hypothetical protein (Fragment) n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1FQR8_9STRA)

HSP 1 Score: 303 bits (775), Expect = 1.270e-95
Identity = 149/250 (59.60%), Postives = 190/250 (76.00%), Query Frame = 1
Query:  115 EAAFAKVLKDMM-DKRDNAEPGVLQEISWQRVMLDEAHFIKDRSTSTAKAVFALTSLYKWCLTGTPLQNRVGELYSLVRFLRLDPHAFYQCRSKGCDCKSLSYRFGPEWRACEDCGHTPIMHYANFNRHILNPISRTGYVGEGKKAFLRLKREVLDMILLRRTKSNRSNDICLPPRIVRVRQHRLDEREEDFYQALYTQSQAQFDTYVGSGTILNNYAHIFDILIRLRQAVDHPYLVIYSATKREGMTPA 861
            +AAFA  L+ ++ D + +A   VL  ++W RV+LDEAH IK RST TAKA F+LT++++W L+GTPLQNRVGE YSLVRFLR+DP A Y CR+KGCDCKSL YRF  E   C+DCGH+ + H++ FNRHILNPI R GY G+G++A L+LKREVLD  LLRRTK  R++D+ LPPR+V ++   L   EEDFY ALYTQ ++ FD YV +GTILNNYAHIFD+L+R+RQAV HPYLV++    +   T A
Sbjct:  112 DAAFALNLQKLIEDAQRDARMSVLHSLAWWRVVLDEAHTIKSRSTQTAKAAFSLTAVHRWALSGTPLQNRVGEFYSLVRFLRIDPMAHYFCRAKGCDCKSLHYRF--EHGKCKDCGHSAMQHFSYFNRHILNPIQRDGYAGDGRRAMLKLKREVLDQALLRRTKDTRAHDLFLPPRVVEIKTVALHPIEEDFYNALYTQGKSTFDDYVTNGTILNNYAHIFDLLMRMRQAVGHPYLVVHGKKSQTNQTQA 359          
BLAST of mRNA_H-canaliculatus_F_contig10948.873.1 vs. uniprot
Match: A0A1Y1IBP8_KLENI (Putative SNF2 family N-terminal domain containing protein n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1IBP8_KLENI)

HSP 1 Score: 311 bits (798), Expect = 2.950e-93
Identity = 147/219 (67.12%), Postives = 178/219 (81.28%), Query Frame = 1
Query:  181 LQEISWQRVMLDEAHFIKDRSTSTAKAVFALTSLYKWCLTGTPLQNRVGELYSLVRFLRLDPHAFYQCRSKGCDCKSLSYRFGPEWRACEDCGHTPIMHYANFNRHILNPISRTGYVGEGKKAFLRLKREVLDMILLRRTKSNRSNDICLPPRIVRVRQHRLDEREEDFYQALYTQSQAQFDTYVGSGTILNNYAHIFDILIRLRQAVDHPYLVIYSAT 837
            L  + W R++LDEAH IKDR  STAKAVFA+ S +KW L+GTPLQNRVGELYSLVRFLR+DP+A+Y C  K CDCKSL YRFG +WR C+DCGH+P+ H+  +N+++ NPI + GYVGEG+KA LRLK +VLD  LLRRTK  R+ D+ LPPR   +R+   D RE DFY+ALYTQSQ+QF TYV SGT+LNNYAHIFD+LIRLRQAVDHPYLV++SAT
Sbjct:  523 LHSVQWARIVLDEAHSIKDRRCSTAKAVFAIQSEFKWALSGTPLQNRVGELYSLVRFLRMDPYAYYFC--KKCDCKSLDYRFGKDWRKCDDCGHSPLHHFCWWNKYVANPIKKFGYVGEGRKAMLRLKAKVLDSALLRRTKVERAADLALPPRCTLLRKDAFDPREADFYEALYTQSQSQFATYVDSGTVLNNYAHIFDLLIRLRQAVDHPYLVVHSAT 739          
BLAST of mRNA_H-canaliculatus_F_contig10948.873.1 vs. uniprot
Match: A0A7S0JIU8_9EUKA (Hypothetical protein n=1 Tax=Calcidiscus leptoporus TaxID=127549 RepID=A0A7S0JIU8_9EUKA)

HSP 1 Score: 297 bits (760), Expect = 6.150e-92
Identity = 137/217 (63.13%), Postives = 174/217 (80.18%), Query Frame = 1
Query:  181 LQEISWQRVMLDEAHFIKDRSTSTAKAVFALTSLYKWCLTGTPLQNRVGELYSLVRFLRLDPHAFYQCRSKGCDCKSLSYRFGPEWRACEDCGHTPIMHYANFNRHILNPISRTGYVGEGKKAFLRLKREVLDMILLRRTKSNRSNDICLPPRIVRVRQHRLDEREEDFYQALYTQSQAQFDTYVGSGTILNNYAHIFDILIRLRQAVDHPYLVIYS 831
            L ++ W RV+LDEAH IKDR  STA+AVFAL + Y+WCL+GTPLQNRVGELYSLV+FLR+DP+A+Y C+  GC CK   YRF  E+R C  CGHTP+ HY+ FNR ++NPI + GYVG G+  FL LKR+VLD +LLRRTK+ R++++ LPP++V +  + LDERE DFYQA+YTQS A+F  YV +GT+LNNYAHIFD+L RLRQA DHPYLV++S
Sbjct:   43 LHKLHWLRVVLDEAHAIKDRRCSTAQAVFALAADYRWCLSGTPLQNRVGELYSLVQFLRVDPYAYYFCKVDGCSCKCREYRFDDEYRKCLYCGHTPLQHYSLFNRDVVNPIRKFGYVGAGRNGFLTLKRDVLDKVLLRRTKAGRADEMVLPPKVVTIEANFLDEREHDFYQAIYTQSVAEFGAYVQAGTLLNNYAHIFDLLTRLRQATDHPYLVLHS 259          
BLAST of mRNA_H-canaliculatus_F_contig10948.873.1 vs. uniprot
Match: A0A7S0WF06_9CHLO (Hypothetical protein n=1 Tax=Pyramimonas obovata TaxID=1411642 RepID=A0A7S0WF06_9CHLO)

HSP 1 Score: 293 bits (749), Expect = 3.680e-90
Identity = 144/247 (58.30%), Postives = 182/247 (73.68%), Query Frame = 1
Query:  151 DKRDNAEP----GVLQEISWQRVMLDEAHFIKDRSTSTAKAVFALTSLYKWCLTGTPLQNRVGELYSLVRFLRLDPHAFYQCRSKGCDCKSLSYRFGPEWRACEDCGHTPIMHYANFNRHILNPISRTGYVGEGKKAFLRLKREVLDMILLRRTKSNRSNDICLPPRIVRVRQHRLDEREEDFYQALYTQSQAQFDTYVGSGTILNNYAHIFDILIRLRQAVDHPYLVIYSATKREGMTPAMNSAAG 879
            D+R   +P     +L    W R++LDEAH IKDR  +TAKAVFA+ S YKW L+GTPLQNRVGELYS +RFL++DP+++Y C++KGC+C SL +  G +WR C+ CGH+P+ HY  +NR I NPI   GY G+G  A L LK EVL   LLRRTK   ++D+ LPPR   +R+   D REEDFYQALYTQSQ+QFDTYV SGT++NNYAHIFD+LIRLRQAV+HPYLV++SA+    M  A  +AAG
Sbjct:   40 DERKQMKPDFSASLLHRYHWHRIVLDEAHCIKDRRCNTAKAVFAIASTYKWALSGTPLQNRVGELYSQIRFLQIDPYSYYFCKAKGCNCSSLDFSMGKDWRKCDGCGHSPLQHYCWWNRIIANPIKYNGYTGKGYDAMLILKNEVLARTLLRRTKEQCADDLALPPRQKYLRKLPFDPREEDFYQALYTQSQSQFDTYVSSGTVVNNYAHIFDLLIRLRQAVNHPYLVVHSASA--AMRAAAEAAAG 284          
BLAST of mRNA_H-canaliculatus_F_contig10948.873.1 vs. uniprot
Match: A0A8J4FVQ8_9CHLO (Uncharacterized protein n=3 Tax=Volvox reticuliferus TaxID=1737510 RepID=A0A8J4FVQ8_9CHLO)

HSP 1 Score: 293 bits (751), Expect = 3.270e-89
Identity = 172/381 (45.14%), Postives = 209/381 (54.86%), Query Frame = 1
Query:  157 RDNAEPGVLQEISWQRVMLDEAHFIKDRSTSTAKAVFALTSLYKWCLTGTPLQNRVGELYSLVRFLRLDPHAFYQCRSKG--CDCKSLSYRFGPEWRACEDCGHTPIMHYANFNRHILNPISRTGYVGEGKKAFLRLKREVLDMILLRRTKSNRSNDICLPPRIVRVRQHRLDEREEDFYQALYTQSQAQFDTYVGSGTILNNYAHIFDILIRLRQAVDHPYLVIYSATKREGMTPAMNSAAGQNPAPASTLSPAPAATRETPARGSRSSRSXXXXXXXXXXXXXXXATPSGGGRPGRSSRGQGDLGDTSSDSEXXXXXXXXXXXXXKGEGARSPVGFGGAAHEEYESSGDEGEEDDLCGICREPAERPVSSACGHSFCRT 1293
            R   +  VL +++W+R++LDEAH IKDR  STAKAVFAL S YKW L+GTPLQNRV ELYSL+RFLR+ P+A+Y CR  G  C C SL Y F    R C+ C H+P+ HY  +NR + NPI   GY G G+ A + LK  +L  ILLRRTK   ++D+ LPPR V +R+ R DE EED+YQALYTQSQAQF  YV SGT+LNNYAHIFD+LIRLRQAVDHPYLVI+SAT    +                              RGS                         GG   +S   Q D G T++ +               G GA  P G G AA               +CG+C E  E  V + CGH FCRT
Sbjct:   91 RKPQDASVLHKVAWRRIILDEAHCIKDRRCSTAKAVFALNSKYKWALSGTPLQNRVAELYSLIRFLRIYPYAYYFCRKAGAACGCSSLDYPFTRHHRQCDLCSHSPLSHYCWWNRFVANPIKAHGYSGRGRTALMLLKNRILPAILLRRTKVQCADDLALPPRTVLLRRDRFDELEEDYYQALYTQSQAQFGAYVESGTLLNNYAHIFDLLIRLRQAVDHPYLVIFSATATAAVD-----------------------------RGS-----------------------GAGGGSVKSPAEQRDRGATTAAAAAAPDTVVHLGAYGSGGGAAGPTGGGLAAP--------------ICGLCHEEIEDGVVAGCGHGFCRT 405          
BLAST of mRNA_H-canaliculatus_F_contig10948.873.1 vs. uniprot
Match: A0A8J5XZ61_DIALT (Uncharacterized protein n=2 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J5XZ61_DIALT)

HSP 1 Score: 302 bits (774), Expect = 7.490e-89
Identity = 147/234 (62.82%), Postives = 181/234 (77.35%), Query Frame = 1
Query:  178 VLQEISWQRVMLDEAHFIKDRSTSTAKAVFALTSLYKWCLTGTPLQNRVGELYSLVRFLRLDPHAFYQCRSKGCDCKSLSYRFGPEWRACEDCGHTPIMHYANFNRHILNPISRTGYVGEGKKAFLRLKREVLDMILLRRTKSNRSNDICLPPRIVRVRQHRLDEREEDFYQALYTQSQAQFDTYVGSGTILNNYAHIFDILIRLRQAVDHPYLVIYSATKREGMTPAMNSAAG 879
            VL E+ WQRV+LDEAH +KDR  STA+AVFAL S  +W L+GTPLQNRVGELYSLV++LRLDP +FY C +KGC CKS  YRF   WR C  CGH+P+ H++ FN+ ILNPI + GYVGEG+ A L LK +V D+ LLRRTK+ R+ DI LPP++V+VR+  LD++E DFY A+YTQS AQFDTYV  G +LNNYAHIFD+L RLRQAVDHPYLV++SA   E    A++ A G
Sbjct:  683 VLHEVLWQRVVLDEAHAVKDRRCSTAQAVFALRSSLRWALSGTPLQNRVGELYSLVQYLRLDPLSFYCCSTKGCACKSREYRFTDGWRKCVICGHSPLKHFSVFNKTILNPIKKFGYVGEGRTAMLALKEQVFDVALLRRTKAERAADIALPPKLVKVRRDLLDDKELDFYNAIYTQSVAQFDTYVQRGVLLNNYAHIFDLLTRLRQAVDHPYLVLHSARAEEEAASALSIAHG 916          
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig10948.873.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JN56_9PHAE7.800e-18178.14Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
W7TXY3_9STRA1.000e-11276.89Snf2 super family n=2 Tax=Monodopsidaceae TaxID=42... [more]
A0A7S3MHT9_9STRA1.380e-9972.00Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]
A0A836CRA2_9STRA1.510e-9973.81P-loop containing nucleoside triphosphate hydrolas... [more]
A0A7S1FQR8_9STRA1.270e-9559.60Hypothetical protein (Fragment) n=1 Tax=Corethron ... [more]
A0A1Y1IBP8_KLENI2.950e-9367.12Putative SNF2 family N-terminal domain containing ... [more]
A0A7S0JIU8_9EUKA6.150e-9263.13Hypothetical protein n=1 Tax=Calcidiscus leptoporu... [more]
A0A7S0WF06_9CHLO3.680e-9058.30Hypothetical protein n=1 Tax=Pyramimonas obovata T... [more]
A0A8J4FVQ8_9CHLO3.270e-8945.14Uncharacterized protein n=3 Tax=Volvox reticulifer... [more]
A0A8J5XZ61_DIALT7.490e-8962.82Uncharacterized protein n=2 Tax=Diacronema lutheri... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig10948contigH-canaliculatus_F_contig10948:94..4282 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score292.7
Seed ortholog evalue2.7e-76
Seed eggNOG ortholog65071.PYU1_T012186
Preferred nameRAD16
KEGG koko:K08066,ko:K12850,ko:K15083
KEGG Pathwayko03040,ko04612,ko05152,map03040,map04612,map05152
GOsGO:0000109,GO:0000113,GO:0000151,GO:0000166,GO:0000715,GO:0000720,GO:0003674,GO:0003676,GO:0003677,GO:0003678,GO:0003824,GO:0004003,GO:0004386,GO:0004842,GO:0005488,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0006139,GO:0006259,GO:0006281,GO:0006289,GO:0006290,GO:0006464,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0008026,GO:0008094,GO:0008104,GO:0008144,GO:0008150,GO:0008152,GO:0008270,GO:0009987,GO:0016043,GO:0016462,GO:0016567,GO:0016740,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017076,GO:0017111,GO:0019538,GO:0019787,GO:0030554,GO:0031461,GO:0031463,GO:0032392,GO:0032446,GO:0032508,GO:0032553,GO:0032555,GO:0032559,GO:0032991,GO:0033036,GO:0033554,GO:0034613,GO:0034641,GO:0035639,GO:0036094,GO:0036211,GO:0042623,GO:0043167,GO:0043168,GO:0043169,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0046483,GO:0046872,GO:0046914,GO:0050896,GO:0051179,GO:0051276,GO:0051641,GO:0051716,GO:0061630,GO:0061659,GO:0070035,GO:0070647,GO:0070727,GO:0071103,GO:0071704,GO:0071840,GO:0090304,GO:0097159,GO:0097367,GO:0140096,GO:0140097,GO:1901265,GO:1901360,GO:1901363,GO:1901564,GO:1902494,GO:1990234,GO:1990391
EggNOG free text desc.DNA repair protein. Source PGD
EggNOG OGs1MACD@121069,COG0141@1,KOG1002@2759
COG Functional cat.L
Best tax levelPythiales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03000,ko03041,ko03400
Hectar predicted targeting categoryother localisation
Exons6
Model size1293
Cds size1293
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig10948.873.1prot_H-canaliculatus_F_contig10948.873.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig10948 94..4282 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928765.9621022-CDS-H-canaliculatus_F_contig10948:93..2821622928765.9621022-CDS-H-canaliculatus_F_contig10948:93..282Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10948 94..282 +
1696845555.2850783-CDS-H-canaliculatus_F_contig10948:93..2821696845555.2850783-CDS-H-canaliculatus_F_contig10948:93..282Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10948 94..282 +
1622928765.984931-CDS-H-canaliculatus_F_contig10948:545..6771622928765.984931-CDS-H-canaliculatus_F_contig10948:545..677Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10948 546..677 +
1696845555.2976515-CDS-H-canaliculatus_F_contig10948:545..6771696845555.2976515-CDS-H-canaliculatus_F_contig10948:545..677Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10948 546..677 +
1622928765.9985695-CDS-H-canaliculatus_F_contig10948:1092..12861622928765.9985695-CDS-H-canaliculatus_F_contig10948:1092..1286Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10948 1093..1286 +
1696845555.3068511-CDS-H-canaliculatus_F_contig10948:1092..12861696845555.3068511-CDS-H-canaliculatus_F_contig10948:1092..1286Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10948 1093..1286 +
1622928766.0118356-CDS-H-canaliculatus_F_contig10948:1957..21231622928766.0118356-CDS-H-canaliculatus_F_contig10948:1957..2123Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10948 1958..2123 +
1696845555.315356-CDS-H-canaliculatus_F_contig10948:1957..21231696845555.315356-CDS-H-canaliculatus_F_contig10948:1957..2123Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10948 1958..2123 +
1622928766.025325-CDS-H-canaliculatus_F_contig10948:2899..29951622928766.025325-CDS-H-canaliculatus_F_contig10948:2899..2995Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10948 2900..2995 +
1696845555.32502-CDS-H-canaliculatus_F_contig10948:2899..29951696845555.32502-CDS-H-canaliculatus_F_contig10948:2899..2995Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10948 2900..2995 +
1622928766.0373874-CDS-H-canaliculatus_F_contig10948:3766..42821622928766.0373874-CDS-H-canaliculatus_F_contig10948:3766..4282Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10948 3767..4282 +
1696845555.3328538-CDS-H-canaliculatus_F_contig10948:3766..42821696845555.3328538-CDS-H-canaliculatus_F_contig10948:3766..4282Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10948 3767..4282 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig10948.873.1

>prot_H-canaliculatus_F_contig10948.873.1 ID=prot_H-canaliculatus_F_contig10948.873.1|Name=mRNA_H-canaliculatus_F_contig10948.873.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=431bp
KRKRAAGESESEWSDESDSEYTSGDDADESSKDARAQKEAAFAKVLKDMM
DKRDNAEPGVLQEISWQRVMLDEAHFIKDRSTSTAKAVFALTSLYKWCLT
GTPLQNRVGELYSLVRFLRLDPHAFYQCRSKGCDCKSLSYRFGPEWRACE
DCGHTPIMHYANFNRHILNPISRTGYVGEGKKAFLRLKREVLDMILLRRT
KSNRSNDICLPPRIVRVRQHRLDEREEDFYQALYTQSQAQFDTYVGSGTI
LNNYAHIFDILIRLRQAVDHPYLVIYSATKREGMTPAMNSAAGQNPAPAS
TLSPAPAATRETPARGSRSSRSAAASPAPPAASSSGAATPSGGGRPGRSS
RGQGDLGDTSSDSESSDRERSGKKAGGKGEGARSPVGFGGAAHEEYESSG
DEGEEDDLCGICREPAERPVSSACGHSFCRT
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mRNA from alignment at H-canaliculatus_F_contig10948:94..4282+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig10948.873.1 ID=mRNA_H-canaliculatus_F_contig10948.873.1|Name=mRNA_H-canaliculatus_F_contig10948.873.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=4189bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10948:94..4282+ (Hapterophycus canaliculatus Oshoro5f female)
AAGAGAAAGAGAGCGGCGGGCGAGTCGGAGAGCGAGTGGAGCGATGAGTC AGACTCGGAATACACGAGCGGCGACGATGCTGACGAGAGCAGCAAGGATG CCCGTGCGCAAAAGGAGGCCGCGTTCGCCAAGGTCCTCAAGGATATGATG GACAAGAGGGACAACGCTGAGCCGGGAGTGCTCCAAGAGGTATGTCCTGG AGTTGTTGTTGCTTTTTGCTCTGCTGCCCTCGCTCGCGCCGTCCGCCGAC CGCACGGCCTCATCAGTTCTGCAAGACGGTGTGACACTCCAGTACCCGAA GCCAACACAAGACGCTTCTCGGGAAATGATCGTTTGTCTTTCGAATCTTG ACATTGCCTCGACCCTCCCCCGTTGTCTCCGTCGCCGTCTCCGTCCGCCC GCCCTCTCGCCCGCCCGCCGTTCGAAAACGAACGGCCCGTTGCCGCCGCC AGATCTCGTGGCAGCGCGTCATGCTGGACGAGGCTCACTTCATCAAAGAC CGCTCCACCTCCACCGCGAAGGCTGTCTTCGCCCTCACGTCGCTCTACAA GTGGTGCCTCACGGGGACTCCGCTTCAAAACAGGGTGAGGCGCGGCGGCA ACGGTAAGGTGTAAGATGAGCCGTGGCATCGGCAACAGCGACGCGCCCCC GTTGTGTCTTCGGCGATAAGTGTTGCCCCCGTTGGAGCCTGTCTTGACCC GGGGTTCGGAACTACGATACCCCTGCGTTCAGGATGTCTGGGTCGAGTGT TACCCGCTGGGTCGCCGGCCGGGACGTGCCTTACAACTGACACGATCGAT CGATCGCTAGGTTGCTTTCCCTCTCTGGCCAATTTTTTCCTAGCGGTCTC CCCCGGACCTGTCAGCCGGCGGCGATGGCTGTCCCCGCCCGTTGGAGTTC CAATAGCATGTGGCCTTAGGGCAGAGAAACATAAAGCGGGAAAGGCGTGC ATGTGCCCACTCCTCCTCCCCCCCACCCCTTTCTGTGTCGCCTCTGAAGG TCGGAGAGCTCTACTCGCTTGTTCGTTTCTTGCGGCTGGACCCACATGCG TTCTACCAGTGCCGCAGCAAGGGCTGCGACTGCAAGAGCTTGAGCTACCG CTTCGGGCCGGAGTGGCGGGCGTGCGAGGATTGCGGGCACACGCCCATCA TGCACTACGCCAACTTCAACCGTCACATCCTCAACCCCATATCGTGAGCC CCCCCCTCTCTCTCTCTCTCTGCGTTGTTAATAGTAGCACACGTTGTAGC TGCAACCGTCTCCAGTTGGCGGGTGTTTACACGAATACGAGACAGCGTTT CCTCGGCTTGTCCCGGGTGCTCGATGAAACTCTCGCGAGGTCTATACCGT GAGCAGATGCTAGACACGTGTCGGGATGTCTCGTGTTCTTTTTCCCAGGA GCGCAGTCCACCATAGTGATCTCGTTATTGTGGTTGTTGTGGTTGTTGTT GTTTTGTTCATCCGGTTCCTTCTGTCGCCGTGCCGAACCCCCCGAAACAC GCTCGGTGATCATCAAGCGGGCATCCTTTGAGGTCAGCCCTCCGAACCAC CCTCTACTTTCTTCCACGCTCCGCGAAAGCAAACGTGGGGTCAACTCGTA TGCCTTGCCTTCAGCTCCGAACCCCCCCCCCCCCCCCCCCTTTCCCAACC ACCCACCCCCCCCCTTCCCGGCTGGGCAGGCGCACGGGGTACGGCGGGGA GGGCCAGAAGGGGTTCTTGAGGCTCANNNNNNNNNNCCCTTTCCTTTCTT CCCCGCTCCGCGAAAGCCACCGTGGGGTCAACCCGTTTGCCTTGCCTTCA GCCCCGACCCCCCCCCCCCCTCTCCTTGCCCAACCACACACCCTCGCCGT GCCTGTGTGGGCAGACGCACGGGGTACGTCGGAGAGGGCAAGAAGGCGTT CTTGAGGCTCAAGCGCGAGGTGCTGGACATGATCCTCCTGCGCCGCACGA AGAGCAACCGGTCCAACGACATCTGCTTGCCACCGCGTATCGTGAGGGTT CGCCAGCACCGCCTCGACGAGAGGGAAGAGGTACGGATGGGCTCGCCTCA TCTTTTTCTTATTCCTTTTTCTTTTCCAGCGTTTTTAGGTCGCCGTGACG TGGCTCGCGAGGCCAACGTCTCTCCGGTGTGCTGATTTCCAAGACGTTCC CGTTTTCGACTGTTTATTTTCCAACCCTTGAAAGTCCCGGCGGTTGTCCG AACGGTTTTCACTGCAAGGGCACCCATTCAGAACACCGTCGAGAACACCG CTACCTCCGCCACCTGTGTCGACCTCCTCGAAAGTTGCGGGTCATGGTGT TTTGCCCTTTCACTTAGACCCGACCGTATTTGTGCGTTGCCTTGTCCTTG AGAACTCGAACGAAGGAGAGGTGGATGTCATAGAGGATTCAATTTTTGTG ACGGAGTGCTGCACGAGGTTGGGCTGCGTGGAGTACATCCTCTGCCTGTA TCGAAGTCTCCTTGCCAGATCGGCATGACTTGCGAAACAGCCAGCTATTA TGCTTCGTTGTTCGTGCCGACGATGCTCGCTGCCCAAGGGACGTCGGCCA ATCGGAAATCAGCGTCGCCAACGCTGACCAATAGAAAAAGTGCGAGCACG CAATGCCTTTCTCTGTGTTTATACGGCCGTGCTCTGTAGCGCACTTGTCG TCCTTGACCTTCGAGGCCGAAGCTGCTCGACTTCGACTGCCCCAACAGGC CCGTTGAAGTTCCTCAGTTGTCGTTTCGTACGAGGAGTTGTTCATTTTTT CGCTCCACGCCGTCGTCTTTTCGCCCGCAACATCGCGTCTCCCCGGTTTG TCGCAGGACTTCTATCAAGCTCTCTACACGCAGTCGCAGGCCCAGTTCGA CACCTACGTGGGCTCGGGCACCATCCTCAACAACTACGCTCACATCTTCG ACGTGAGCGTTCGGAGTTTCACGCCGCCCCCCTTGTTTCGATCGGACCGC GGGCGTGAGATGTCTGCTTGCGGTGGATCTTAATCTTGATGCTCTTTCGG TGGCCGGGCGTCGCCGTGTTGGAGTAGTGCAGCCTCGTACGGACACAAGA TCGCGGACCGATGGCAGTGGTTGACTGCTCTCCGCTTAACGCATTTGGGA GTGAGTTCGGGCATCAAAAGCGCGACTCGAGAGGTGATGCCAGGAAGTTG TGGCCCCAGCGGCTCTCTCCCCCTCCCCCCTTCTCTCCCTCTCTCCCTCT CTTTCTTCCTTGCTCTTTTCGTGTGTCGCTGGTGGGAGGGGCAAATGCAG TCTGTGGTGAGACCCGTATTCCAGCACCCGGTGCCCTTTCTTTTTCTGAA AACAAGCTCTCTCCGACGAATATGGATTCCTGTGTGAGTGCTCTTGGTTT CGGCCTCTGGTCTGCACACTGCCGCAAGAAGAAACCCCGCGACTGCTTTC GGAACTGAGGTCAAGGAAGCTCTGATGCCGCTTGCAGCTCACGGGGAAAC TCTCCGCACATGGGCAAAAGGAACGGGACGTCTCTCGAGAAGGAATAGAG CATGCACGTACGCTTCGTGTCCCTGACACACGGCGCTCGGCCAACTTAAG TGCTGAGTCCGAGTAAGACACATCATCCTCAAGTCAAGTTACTTCACTGG CATGTTTTTTTTAACCCACCGGCGGCTGTCCCCCCTCACCTCCCTCCAAC GCTCGCTCGCCGTTCCCCTCCAGATCCTCATTCGCCTGCGACAAGCCGTC GACCACCCTTACCTGGTGATCTACAGCGCCACGAAGCGAGAGGGCATGAC CCCGGCGATGAACTCGGCGGCCGGCCAGAACCCGGCGCCGGCCTCGACCC TATCCCCCGCACCCGCCGCCACGCGAGAAACGCCTGCGCGAGGGTCTCGG TCGTCTCGCTCCGCCGCCGCCTCTCCGGCGCCGCCCGCGGCATCATCCAG CGGCGCTGCGACGCCCAGCGGTGGTGGCCGGCCGGGCCGCTCCTCTCGAG GCCAAGGAGATCTCGGCGACACCTCGTCGGATTCGGAGTCCTCGGACCGA GAACGGTCGGGGAAGAAGGCGGGCGGGAAGGGCGAGGGCGCCCGGAGCCC TGTCGGCTTCGGCGGAGCGGCGCACGAGGAGTACGAGTCGAGCGGAGACG AGGGGGAGGAGGATGACTTGTGCGGGATCTGCCGCGAGCCGGCCGAGCGG CCCGTGTCCTCGGCTTGCGGGCACTCTTTCTGCCGCACC
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig10948:94..4282+

>mRNA_H-canaliculatus_F_contig10948.873.1 ID=mRNA_H-canaliculatus_F_contig10948.873.1|Name=mRNA_H-canaliculatus_F_contig10948.873.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=2586bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10948:94..4282+ (Hapterophycus canaliculatus Oshoro5f female)
AAGAGAAAGAGAGCGGCGGGCGAGTCGGAGAGCGAGTGGAGCGATGAGTC
AGACTCGGAATACACGAGCGGCGACGATGCTGACGAGAGCAGCAAGGATG
CCCGTGCGCAAAAGGAGGCCGCGTTCGCCAAGGTCCTCAAGGATATGATG
GACAAGAGGGACAACGCTGAGCCGGGAGTGCTCCAAGAGAAGAGAAAGAG
AGCGGCGGGCGAGTCGGAGAGCGAGTGGAGCGATGAGTCAGACTCGGAAT
ACACGAGCGGCGACGATGCTGACGAGAGCAGCAAGGATGCCCGTGCGCAA
AAGGAGGCCGCGTTCGCCAAGGTCCTCAAGGATATGATGGACAAGAGGGA
CAACGCTGAGCCGGGAGTGCTCCAAGAGATCTCGTGGCAGCGCGTCATGC
TGGACGAGGCTCACTTCATCAAAGACCGCTCCACCTCCACCGCGAAGGCT
GTCTTCGCCCTCACGTCGCTCTACAAGTGGTGCCTCACGGGGACTCCGCT
TCAAAACAGGATCTCGTGGCAGCGCGTCATGCTGGACGAGGCTCACTTCA
TCAAAGACCGCTCCACCTCCACCGCGAAGGCTGTCTTCGCCCTCACGTCG
CTCTACAAGTGGTGCCTCACGGGGACTCCGCTTCAAAACAGGGTCGGAGA
GCTCTACTCGCTTGTTCGTTTCTTGCGGCTGGACCCACATGCGTTCTACC
AGTGCCGCAGCAAGGGCTGCGACTGCAAGAGCTTGAGCTACCGCTTCGGG
CCGGAGTGGCGGGCGTGCGAGGATTGCGGGCACACGCCCATCATGCACTA
CGCCAACTTCAACCGTCACATCCTCAACCCCATATCGTCGGAGAGCTCTA
CTCGCTTGTTCGTTTCTTGCGGCTGGACCCACATGCGTTCTACCAGTGCC
GCAGCAAGGGCTGCGACTGCAAGAGCTTGAGCTACCGCTTCGGGCCGGAG
TGGCGGGCGTGCGAGGATTGCGGGCACACGCCCATCATGCACTACGCCAA
CTTCAACCGTCACATCCTCAACCCCATATCACGCACGGGGTACGTCGGAG
AGGGCAAGAAGGCGTTCTTGAGGCTCAAGCGCGAGGTGCTGGACATGATC
CTCCTGCGCCGCACGAAGAGCAACCGGTCCAACGACATCTGCTTGCCACC
GCGTATCGTGAGGGTTCGCCAGCACCGCCTCGACGAGAGGGAAGAGACGC
ACGGGGTACGTCGGAGAGGGCAAGAAGGCGTTCTTGAGGCTCAAGCGCGA
GGTGCTGGACATGATCCTCCTGCGCCGCACGAAGAGCAACCGGTCCAACG
ACATCTGCTTGCCACCGCGTATCGTGAGGGTTCGCCAGCACCGCCTCGAC
GAGAGGGAAGAGGACTTCTATCAAGCTCTCTACACGCAGTCGCAGGCCCA
GTTCGACACCTACGTGGGCTCGGGCACCATCCTCAACAACTACGCTCACA
TCTTCGACGACTTCTATCAAGCTCTCTACACGCAGTCGCAGGCCCAGTTC
GACACCTACGTGGGCTCGGGCACCATCCTCAACAACTACGCTCACATCTT
CGACATCCTCATTCGCCTGCGACAAGCCGTCGACCACCCTTACCTGGTGA
TCTACAGCGCCACGAAGCGAGAGGGCATGACCCCGGCGATGAACTCGGCG
GCCGGCCAGAACCCGGCGCCGGCCTCGACCCTATCCCCCGCACCCGCCGC
CACGCGAGAAACGCCTGCGCGAGGGTCTCGGTCGTCTCGCTCCGCCGCCG
CCTCTCCGGCGCCGCCCGCGGCATCATCCAGCGGCGCTGCGACGCCCAGC
GGTGGTGGCCGGCCGGGCCGCTCCTCTCGAGGCCAAGGAGATCTCGGCGA
CACCTCGTCGGATTCGGAGTCCTCGGACCGAGAACGGTCGGGGAAGAAGG
CGGGCGGGAAGGGCGAGGGCGCCCGGAGCCCTGTCGGCTTCGGCGGAGCG
GCGCACGAGGAGTACGAGTCGAGCGGAGACGAGGGGGAGGAGGATGACTT
GTGCGGGATCTGCCGCGAGCCGGCCGAGCGGCCCGTGTCCTCGGCTTGCG
GGCACTCTTTCTGCCGCACCATCCTCATTCGCCTGCGACAAGCCGTCGAC
CACCCTTACCTGGTGATCTACAGCGCCACGAAGCGAGAGGGCATGACCCC
GGCGATGAACTCGGCGGCCGGCCAGAACCCGGCGCCGGCCTCGACCCTAT
CCCCCGCACCCGCCGCCACGCGAGAAACGCCTGCGCGAGGGTCTCGGTCG
TCTCGCTCCGCCGCCGCCTCTCCGGCGCCGCCCGCGGCATCATCCAGCGG
CGCTGCGACGCCCAGCGGTGGTGGCCGGCCGGGCCGCTCCTCTCGAGGCC
AAGGAGATCTCGGCGACACCTCGTCGGATTCGGAGTCCTCGGACCGAGAA
CGGTCGGGGAAGAAGGCGGGCGGGAAGGGCGAGGGCGCCCGGAGCCCTGT
CGGCTTCGGCGGAGCGGCGCACGAGGAGTACGAGTCGAGCGGAGACGAGG
GGGAGGAGGATGACTTGTGCGGGATCTGCCGCGAGCCGGCCGAGCGGCCC
GTGTCCTCGGCTTGCGGGCACTCTTTCTGCCGCACC
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