mRNA_H-canaliculatus_F_contig10939.868.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig10939.868.1
Unique NamemRNA_H-canaliculatus_F_contig10939.868.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig10939.868.1 vs. uniprot
Match: D8LEK3_ECTSI (Pyruvate dehydrogenase (acetyl-transferring) n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LEK3_ECTSI)

HSP 1 Score: 382 bits (981), Expect = 1.110e-125
Identity = 195/203 (96.06%), Postives = 201/203 (99.01%), Query Frame = 1 
Query:    1 PFHAYVMGIPGIKICTAASPEAAYGITKSMIRDNGPGILFCPVKMMKGVKGELELGKCLPLNKAAVLHAASEESVAKGTAVTVLTYLHGVKEAQVSIDAIVAGGADIDLIELRTLKPLDMETIGMSLRRTHKVAILDESTRSGGVGASISAIVSEELYDELDAPVRRLCMDDAPVPYASSMEKAVVKRGEDLIQAVLDLAKNA 609
            PFHAYVMGIPG+KICTAASPEAAYGITKSMIRDNGPGILFCPVKMMKGVKGELELGKCLP+NKAAVLHAASE++VAKGTAVTVLTYLHGVKEAQ SIDAIVAGGADIDLIELRTLKPLD+ETIGMSLRRTHKVAILDESTRSGGVGASISAIVSEELYDELDAPVRRLCMDDAPVPYASSMEKAVVKRGEDLI AVLDLA+NA
Sbjct:  604 PFHAYVMGIPGLKICTAASPEAAYGITKSMIRDNGPGILFCPVKMMKGVKGELELGKCLPMNKAAVLHAASEDAVAKGTAVTVLTYLHGVKEAQDSIDAIVAGGADIDLIELRTLKPLDLETIGMSLRRTHKVAILDESTRSGGVGASISAIVSEELYDELDAPVRRLCMDDAPVPYASSMEKAVVKRGEDLIAAVLDLARNA 806
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BLAST of mRNA_H-canaliculatus_F_contig10939.868.1 vs. uniprot
Match: A0A7S2KDP0_9STRA (Pyruvate dehydrogenase E1 component subunit beta n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2KDP0_9STRA)

HSP 1 Score: 308 bits (790), Expect = 2.190e-101
Identity = 157/203 (77.34%), Postives = 175/203 (86.21%), Query Frame = 1 
Query:    1 PFHAYVMGIPGIKICTAASPEAAYGITKSMIRDNGPGILFCPVKMMKGVKGELELGKCLPLNKAAVLHAASEESVAKGTAVTVLTYLHGVKEAQVSIDAIVAGGADIDLIELRTLKPLDMETIGMSLRRTHKVAILDESTRSGGVGASISAIVSEELYDELDAPVRRLCMDDAPVPYASSMEKAVVKRGEDLIQAVLDLAKNA 609
            PFHAYVMGIPG+KICTAASP AAYGITKSMIRDNGP  LF PVKMMK  KG ++L +CLPLNKAA+LH AS +SVA G AVTVLTYLHGVKE+Q+SI  I   G DIDLIELRTLKPLDMETI  SL RT+K+ ILDEST+SGGVGA+ISA +SEEL+D LDAPV+RL MDDAPVPYASSMEKAVVKRG DL+QAV+DL  N+
Sbjct:  233 PFHAYVMGIPGLKICTAASPAAAYGITKSMIRDNGPCFLFAPVKMMKEAKGTVDLDRCLPLNKAALLHEASADSVAAGNAVTVLTYLHGVKESQISIAEIQDEGMDIDLIELRTLKPLDMETIAKSLERTNKICILDESTKSGGVGATISAAISEELFDLLDAPVKRLSMDDAPVPYASSMEKAVVKRGSDLVQAVIDLCSNS 435
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BLAST of mRNA_H-canaliculatus_F_contig10939.868.1 vs. uniprot
Match: B8C5P9_THAPS (Pyruvate dehydrogenase E1 component subunit beta n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8C5P9_THAPS)

HSP 1 Score: 300 bits (767), Expect = 1.610e-99
Identity = 153/199 (76.88%), Postives = 170/199 (85.43%), Query Frame = 1 
Query:    1 PFHAYVMGIPGIKICTAASPEAAYGITKSMIRDNGPGILFCPVKMMKGVKGELELGKCLPLNKAAVLHAASEESVAKGTAVTVLTYLHGVKEAQVSIDAIVAGGADIDLIELRTLKPLDMETIGMSLRRTHKVAILDESTRSGGVGASISAIVSEELYDELDAPVRRLCMDDAPVPYASSMEKAVVKRGEDLIQAVLDL 597
            PFHAYVMGIPG+KICTAASP+AAYGITKSMIRDNGP  LF PVKMMK  KG L+L  C PLNKAA+LH AS ESVA G AVTVLTYLHGVKEAQ+ ID I   G DIDLIELR+LKPLDM+TI  SL RT+K AILDEST+SGGVGA++SA +SE+L+D LDAPV+RLCMDDAPVPYAS+ME AVVKRG DL+Q V DL
Sbjct:  115 PFHAYVMGIPGLKICTAASPDAAYGITKSMIRDNGPCFLFAPVKMMKEAKGTLDLDVCAPLNKAALLHEASAESVASGNAVTVLTYLHGVKEAQLVIDEITEEGFDIDLIELRSLKPLDMDTIRKSLERTNKCAILDESTQSGGVGATVSARISEDLFDLLDAPVKRLCMDDAPVPYASTMEVAVVKRGSDLVQGVFDL 313
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BLAST of mRNA_H-canaliculatus_F_contig10939.868.1 vs. uniprot
Match: A0A8J6CFX7_DIALT (Pyruvate dehydrogenase (acetyl-transferring) n=2 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J6CFX7_DIALT)

HSP 1 Score: 311 bits (796), Expect = 2.790e-98
Identity = 157/202 (77.72%), Postives = 178/202 (88.12%), Query Frame = 1 
Query:    1 PFHAYVMGIPGIKICTAASPEAAYGITKSMIRDNGPGILFCPVKMMKGVKGELELGKCLPLNKAAVLHAASEESVAKGTAVTVLTYLHGVKEAQVSIDAIVAGGADIDLIELRTLKPLDMETIGMSLRRTHKVAILDESTRSGGVGASISAIVSEELYDELDAPVRRLCMDDAPVPYASSMEKAVVKRGEDLIQAVLDLAKN 606
            PFHAYVMGIPG+KICTA+SPEAAYGITKSMIRDNGP ILFCPVKMMK  KG++ +G CLPLNKAA+LH AS+++VA G AVTVLTYLHGVKEAQ+ I+AI A G DIDL+ELR+LKPLDM++I  SL+RTHK+AILDEST SGGVGA++SA VSE L+ ELDAPVRRLCMDDAPVPYASSMEKAVVKRG DL+  VL L  N
Sbjct:  591 PFHAYVMGIPGLKICTASSPEAAYGITKSMIRDNGPCILFCPVKMMKEAKGQVPVGTCLPLNKAALLHEASDKAVAAGKAVTVLTYLHGVKEAQMVIEAIQAEGCDIDLLELRSLKPLDMDSIRTSLQRTHKLAILDESTYSGGVGATVSAAVSETLFFELDAPVRRLCMDDAPVPYASSMEKAVVKRGSDLVDGVLSLVFN 792
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BLAST of mRNA_H-canaliculatus_F_contig10939.868.1 vs. uniprot
Match: A0A7S2KFC8_9STRA (Pyruvate dehydrogenase (acetyl-transferring) n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2KFC8_9STRA)

HSP 1 Score: 308 bits (790), Expect = 3.060e-97
Identity = 157/203 (77.34%), Postives = 175/203 (86.21%), Query Frame = 1 
Query:    1 PFHAYVMGIPGIKICTAASPEAAYGITKSMIRDNGPGILFCPVKMMKGVKGELELGKCLPLNKAAVLHAASEESVAKGTAVTVLTYLHGVKEAQVSIDAIVAGGADIDLIELRTLKPLDMETIGMSLRRTHKVAILDESTRSGGVGASISAIVSEELYDELDAPVRRLCMDDAPVPYASSMEKAVVKRGEDLIQAVLDLAKNA 609
            PFHAYVMGIPG+KICTAASP AAYGITKSMIRDNGP  LF PVKMMK  KG ++L +CLPLNKAA+LH AS +SVA G AVTVLTYLHGVKE+Q+SI  I   G DIDLIELRTLKPLDMETI  SL RT+K+ ILDEST+SGGVGA+ISA +SEEL+D LDAPV+RL MDDAPVPYASSMEKAVVKRG DL+QAV+DL  N+
Sbjct:  608 PFHAYVMGIPGLKICTAASPAAAYGITKSMIRDNGPCFLFAPVKMMKEAKGTVDLDRCLPLNKAALLHEASADSVAAGNAVTVLTYLHGVKESQISIAEIQDEGMDIDLIELRTLKPLDMETIAKSLERTNKICILDESTKSGGVGATISAAISEELFDLLDAPVKRLSMDDAPVPYASSMEKAVVKRGSDLVQAVIDLCSNS 810
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BLAST of mRNA_H-canaliculatus_F_contig10939.868.1 vs. uniprot
Match: A0A7S1D9A9_CYCTE (Pyruvate dehydrogenase E1 component subunit beta n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1D9A9_CYCTE)

HSP 1 Score: 294 bits (752), Expect = 3.700e-97
Identity = 151/199 (75.88%), Postives = 170/199 (85.43%), Query Frame = 1 
Query:    1 PFHAYVMGIPGIKICTAASPEAAYGITKSMIRDNGPGILFCPVKMMKGVKGELELGKCLPLNKAAVLHAASEESVAKGTAVTVLTYLHGVKEAQVSIDAIVAGGADIDLIELRTLKPLDMETIGMSLRRTHKVAILDESTRSGGVGASISAIVSEELYDELDAPVRRLCMDDAPVPYASSMEKAVVKRGEDLIQAVLDL 597
            PFHAYVMGIPG+KICTAASPEAAYG+TKSMIRDNGP  LF PVKMMK  KG ++LG C+ LNKAA+LH AS+ SV  G AVTVLTYLHGVKE+  +I+AI   G DIDLIELR+LKPLDMETI  SL RT+K+ ILDEST+SGGVGA+ISA VSEEL+D LDAP++RLCMDDAPVPYASSMEKAVVKRG DLI  V +L
Sbjct:  121 PFHAYVMGIPGLKICTAASPEAAYGLTKSMIRDNGPCFLFAPVKMMKESKGPVDLGNCMALNKAALLHEASQASVDAGNAVTVLTYLHGVKESLGAIEAIQEEGFDIDLIELRSLKPLDMETIAKSLDRTNKLCILDESTKSGGVGATISAQVSEELFDLLDAPIKRLCMDDAPVPYASSMEKAVVKRGSDLIDGVFNL 319
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BLAST of mRNA_H-canaliculatus_F_contig10939.868.1 vs. uniprot
Match: L1J1I5_GUITC (Pyruvate dehydrogenase (acetyl-transferring) n=2 Tax=Guillardia theta TaxID=55529 RepID=L1J1I5_GUITC)

HSP 1 Score: 306 bits (783), Expect = 9.970e-97
Identity = 152/199 (76.38%), Postives = 176/199 (88.44%), Query Frame = 1 
Query:    1 PFHAYVMGIPGIKICTAASPEAAYGITKSMIRDNGPGILFCPVKMMKGVKGELELGKCLPLNKAAVLHAASEESVAKGTAVTVLTYLHGVKEAQVSIDAIVAGGADIDLIELRTLKPLDMETIGMSLRRTHKVAILDESTRSGGVGASISAIVSEELYDELDAPVRRLCMDDAPVPYASSMEKAVVKRGEDLIQAVLDL 597
            PFHAY+MGIPG+K+CTAASPEAAYG+ KSMIRDNGPG+LFCPVKMMK VKG  EL KCLPLNKAA+LHAAS+ +V +GTAVTVLTYLHGVKEAQ ++  I   G DIDLIELR+LKPLD ETI  SL+RTHK+AILDEST+SGGVGA+ISAIVSEE+++ELDAPV+RLCMDDAPVPY+ +ME AVVKR  DL++ V DL
Sbjct:  551 PFHAYIMGIPGLKVCTAASPEAAYGLAKSMIRDNGPGMLFCPVKMMKDVKGSPELDKCLPLNKAALLHAASDAAVKEGTAVTVLTYLHGVKEAQKALPLIQEEGMDIDLIELRSLKPLDRETILASLKRTHKLAILDESTQSGGVGATISAIVSEEMFNELDAPVKRLCMDDAPVPYSLAMEAAVVKRDSDLVKGVADL 749
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BLAST of mRNA_H-canaliculatus_F_contig10939.868.1 vs. uniprot
Match: A0A7S0ENF3_9CRYP (Pyruvate dehydrogenase E1 component subunit beta (Fragment) n=1 Tax=Hanusia phi TaxID=3032 RepID=A0A7S0ENF3_9CRYP)

HSP 1 Score: 292 bits (748), Expect = 9.440e-96
Identity = 145/188 (77.13%), Postives = 168/188 (89.36%), Query Frame = 1 
Query:    1 PFHAYVMGIPGIKICTAASPEAAYGITKSMIRDNGPGILFCPVKMMKGVKGELELGKCLPLNKAAVLHAASEESVAKGTAVTVLTYLHGVKEAQVSIDAIVAGGADIDLIELRTLKPLDMETIGMSLRRTHKVAILDESTRSGGVGASISAIVSEELYDELDAPVRRLCMDDAPVPYASSMEKAVVKR 564
            PFHAY+MGIPG+K+CTAASPEAAYG+ KSMIRDNGPG+LFCPVKMMK VKG  +L KCLPLN+AA+LHAAS+ +V +GTAVTVLTYLHGVKEAQ ++  I   G DIDLIELR+LKPLD ETI  SLRRTHK+AILDEST SGGVGA+ISA+VSEE+++ELDAPV+RLCMDDAPVPY+ +ME AVVKR
Sbjct:  193 PFHAYIMGIPGLKVCTAASPEAAYGLAKSMIRDNGPGMLFCPVKMMKDVKGSPQLDKCLPLNRAALLHAASDAAVKEGTAVTVLTYLHGVKEAQKALPLIQEEGMDIDLIELRSLKPLDKETILTSLRRTHKLAILDESTYSGGVGATISAMVSEEMFNELDAPVKRLCMDDAPVPYSLAMEAAVVKR 380
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BLAST of mRNA_H-canaliculatus_F_contig10939.868.1 vs. uniprot
Match: A0A7S4HES2_9EUKA (Pyruvate dehydrogenase E1 component subunit beta n=1 Tax=Prymnesium polylepis TaxID=72548 RepID=A0A7S4HES2_9EUKA)

HSP 1 Score: 294 bits (752), Expect = 2.920e-95
Identity = 150/199 (75.38%), Postives = 168/199 (84.42%), Query Frame = 1 
Query:    1 PFHAYVMGIPGIKICTAASPEAAYGITKSMIRDNGPGILFCPVKMMKGVKGELELGKCLPLNKAAVLHAASEESVAKGTAVTVLTYLHGVKEAQVSIDAIVAGGADIDLIELRTLKPLDMETIGMSLRRTHKVAILDESTRSGGVGASISAIVSEELYDELDAPVRRLCMDDAPVPYASSMEKAVVKRGEDLIQAVLDL 597
            P HAYVMGIPG+KICTAASPEAAYG+ K+MIRDNGPGILF PVKMMK  K  +++G CLPLNK  VLHAAS+ SV  G AVTVLTYLHGVKEAQ  +  I A G DIDLIE+R+LKPLDM+TI  S+ +THKVAILDEST SGGVGA+ISA +SE+ +D LDAPV RLCMDDAPVPYASSMEKAVVKRG DL+QAV DL
Sbjct:  263 PLHAYVMGIPGLKICTAASPEAAYGLAKAMIRDNGPGILFTPVKMMKEAKSFVDIGTCLPLNKVKVLHAASDASVKAGKAVTVLTYLHGVKEAQSVLADIQAEGMDIDLIEMRSLKPLDMDTIRESVSKTHKVAILDESTFSGGVGATISAAISEKCFDLLDAPVNRLCMDDAPVPYASSMEKAVVKRGSDLVQAVFDL 461
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BLAST of mRNA_H-canaliculatus_F_contig10939.868.1 vs. uniprot
Match: A0A7S1USZ6_9STRA (Pyruvate dehydrogenase E1 component subunit beta n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1USZ6_9STRA)

HSP 1 Score: 293 bits (750), Expect = 5.680e-95
Identity = 147/199 (73.87%), Postives = 172/199 (86.43%), Query Frame = 1 
Query:    1 PFHAYVMGIPGIKICTAASPEAAYGITKSMIRDNGPGILFCPVKMMKGVKGELELGKCLPLNKAAVLHAASEESVAKGTAVTVLTYLHGVKEAQVSIDAIVAGGADIDLIELRTLKPLDMETIGMSLRRTHKVAILDESTRSGGVGASISAIVSEELYDELDAPVRRLCMDDAPVPYASSMEKAVVKRGEDLIQAVLDL 597
            PFHAYVMGIPG+KICTAASP+AAYGITKSMIRDNGP  LF PVKMMK  KG ++LG+C+PLNKAA L+ AS+++V  G AVTVLTYLHGVKE+ +++  I   G D+DLIELR+LKPLDMETI  SL RTHK+ ILDEST+SGGVGA+ISA VSEEL+D LD+PV+RLCMDDAPVPYASSMEKAVVKRG DL++ V +L
Sbjct:  262 PFHAYVMGIPGLKICTAASPDAAYGITKSMIRDNGPCFLFAPVKMMKESKGPVDLGQCMPLNKAAFLNKASDDAVKAGKAVTVLTYLHGVKESIMALPEIQEEGFDVDLIELRSLKPLDMETIAESLSRTHKLCILDESTKSGGVGATISAQVSEELFDMLDSPVKRLCMDDAPVPYASSMEKAVVKRGSDLVEGVYEL 460
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig10939.868.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LEK3_ECTSI1.110e-12596.06Pyruvate dehydrogenase (acetyl-transferring) n=2 T... [more]
A0A7S2KDP0_9STRA2.190e-10177.34Pyruvate dehydrogenase E1 component subunit beta n... [more]
B8C5P9_THAPS1.610e-9976.88Pyruvate dehydrogenase E1 component subunit beta n... [more]
A0A8J6CFX7_DIALT2.790e-9877.72Pyruvate dehydrogenase (acetyl-transferring) n=2 T... [more]
A0A7S2KFC8_9STRA3.060e-9777.34Pyruvate dehydrogenase (acetyl-transferring) n=1 T... [more]
A0A7S1D9A9_CYCTE3.700e-9775.88Pyruvate dehydrogenase E1 component subunit beta n... [more]
L1J1I5_GUITC9.970e-9776.38Pyruvate dehydrogenase (acetyl-transferring) n=2 T... [more]
A0A7S0ENF3_9CRYP9.440e-9677.13Pyruvate dehydrogenase E1 component subunit beta (... [more]
A0A7S4HES2_9EUKA2.920e-9575.38Pyruvate dehydrogenase E1 component subunit beta n... [more]
A0A7S1USZ6_9STRA5.680e-9573.87Pyruvate dehydrogenase E1 component subunit beta n... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig10939contigH-canaliculatus_F_contig10939:123..3433 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score369.4
Seed ortholog evalue1.1e-99
Seed eggNOG ortholog2880.D8LEK3
Preferred nameodpA
KEGG rclassRC00004,RC00027,RC00627,RC02742,RC02744,RC02882
KEGG koko:K00161
KEGG ReactionR00014,R00209,R01699,R03270
KEGG Pathwayko00010,ko00020,ko00620,ko01100,ko01110,ko01120,ko01130,ko01200,ko04066,ko04922,ko05230,map00010,map00020,map00620,map01100,map01110,map01120,map01130,map01200,map04066,map04922,map05230
KEGG ModuleM00307
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0009507,GO:0009526,GO:0009532,GO:0009536,GO:0009570,GO:0009941,GO:0031967,GO:0031975,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464
EggNOG free text desc.pyruvate dehydrogenase (acetyl-transferring) activity
EggNOG OGsCOG0022@1,COG0462@1,KOG0225@2759,KOG0524@2759
EC1.2.4.1
COG Functional cat.C
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEbr01601,ko00000,ko00001,ko00002,ko01000
Hectar predicted targeting categoryother localisation
Exons5
Model size612
Cds size594
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig10939.868.1prot_H-canaliculatus_F_contig10939.868.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig10939 141..3433 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928765.1158977-UTR-H-canaliculatus_F_contig10939:122..1401622928765.1158977-UTR-H-canaliculatus_F_contig10939:122..140Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig10939 123..140 +
1696845554.9129508-UTR-H-canaliculatus_F_contig10939:122..1401696845554.9129508-UTR-H-canaliculatus_F_contig10939:122..140Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig10939 123..140 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928765.1329508-CDS-H-canaliculatus_F_contig10939:140..3591622928765.1329508-CDS-H-canaliculatus_F_contig10939:140..359Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10939 141..359 +
1696845554.9270868-CDS-H-canaliculatus_F_contig10939:140..3591696845554.9270868-CDS-H-canaliculatus_F_contig10939:140..359Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10939 141..359 +
1622928765.1470585-CDS-H-canaliculatus_F_contig10939:949..9941622928765.1470585-CDS-H-canaliculatus_F_contig10939:949..994Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10939 950..994 +
1696845554.9367487-CDS-H-canaliculatus_F_contig10939:949..9941696845554.9367487-CDS-H-canaliculatus_F_contig10939:949..994Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10939 950..994 +
1622928765.1609006-CDS-H-canaliculatus_F_contig10939:1995..21091622928765.1609006-CDS-H-canaliculatus_F_contig10939:1995..2109Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10939 1996..2109 +
1696845554.944561-CDS-H-canaliculatus_F_contig10939:1995..21091696845554.944561-CDS-H-canaliculatus_F_contig10939:1995..2109Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10939 1996..2109 +
1622928765.1908782-CDS-H-canaliculatus_F_contig10939:2642..27381622928765.1908782-CDS-H-canaliculatus_F_contig10939:2642..2738Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10939 2643..2738 +
1696845554.9524565-CDS-H-canaliculatus_F_contig10939:2642..27381696845554.9524565-CDS-H-canaliculatus_F_contig10939:2642..2738Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10939 2643..2738 +
1622928765.2092123-CDS-H-canaliculatus_F_contig10939:3313..34331622928765.2092123-CDS-H-canaliculatus_F_contig10939:3313..3433Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10939 3314..3433 +
1696845554.9606636-CDS-H-canaliculatus_F_contig10939:3313..34331696845554.9606636-CDS-H-canaliculatus_F_contig10939:3313..3433Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10939 3314..3433 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig10939.868.1

>prot_H-canaliculatus_F_contig10939.868.1 ID=prot_H-canaliculatus_F_contig10939.868.1|Name=mRNA_H-canaliculatus_F_contig10939.868.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=198bp
MGIPGIKICTAASPEAAYGITKSMIRDNGPGILFCPVKMMKGVKGELELG
KCLPLNKAAVLHAASEESVAKGTAVTVLTYLHGVKEAQVSIDAIVAGGAD
IDLIELRTLKPLDMETIGMSLRRTHKVAILDESTRSGGVGASISAIVSEE
LYDELDAPVRRLCMDDAPVPYASSMEKAVVKRGEDLIQAVLDLAKNA*
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mRNA from alignment at H-canaliculatus_F_contig10939:123..3433+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig10939.868.1 ID=mRNA_H-canaliculatus_F_contig10939.868.1|Name=mRNA_H-canaliculatus_F_contig10939.868.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=3311bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10939:123..3433+ (Hapterophycus canaliculatus Oshoro5f female)
CCTTTCCACGCGTACGTGATGGGTATCCCCGGCATCAAGATCTGCACGGC
GGCGTCCCCGGAGGCGGCGTATGGCATCACCAAGTCCATGATCCGCGACA
ACGGGCCGGGCATCCTGTTCTGCCCCGTGAAGATGATGAAGGGGGTCAAG
GGGGAGCTCGAGCTGGGCAAGTGCCTGCCCCTGAACAAGGCCGCGGTGCT
GCACGCTGCCTCGGAGGAGTCGGTCGCCAAGGGGACGGTGAGATGCGAGT
CCCGCCGGCGCCCGCGCAGGCGCCGGCGGCGCTGCGACCAGCGGGGGGTG
TTGGTGTTGATGTCCCCCGGCCGCAGAGCAGCGTGTGAAGAAGGCTTGTC
GTTGTTGTTGGTGTTGGTCTACACTGCCTTCCCCGGGCTCCGGAAGAGCG
ACCGCGCGTTCGAACCAAGCCGTGCGGGTGCTGCGCGCTGCGGCCCTAGT
CGGTCGACGGGAGCTCTTCGAAACACCTTCTCCCGAGCACCTTCGAGGTC
CTTCGTGCTTGTAGCGGAGCGTCGCAAGGCGTCTGTTATTCCGGTCGTCC
TTTTTATCCCCCTTTACTCGCGAGCATCCGGTCGGGTGGTCAGCTCTGAT
TCCCCCAGGAGCAGGCCGATGGCTCTGTTCACACGACTTCGCGCGCGCGT
TGCTTTCCCGCCGCGGATGCCCCGAGCCTCCTTTCTTATGCTGCTTCTCC
GCCGTCCTTTGTTTCGCGCCTGCTCACCGTCTTGTTATCTTGCTGCTGCT
GCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGGTTGCGGCCGCGT
TCGGGCGAAACGGCACGGATGGCGCAGGCGGTGACGGTGCTCACGTACCT
GCACGGGGTCAAGGAGGCGCAGGTGACTCGTCTTTTTGTTGTTGCGGCCG
TGGTGACTTCTCTTGGTACCGTACGGCGTGAACAAAATCGTCGTGATCGT
GGCCAGCCTCTGATTGAAAGCAGGATTGGGATGGCGTGACATTTATTCAT
TCGCTTTCGGACTCGTGGACTGACCGTGGCCGTGGTCAACCCGTGACTGA
AGCGCGATTGGGACGTCCTGACCTATGCTCGCCTTAACACTCGCGACGCA
AGGTAGACGCGCATGAAAGGAAGCACGGCGCAGCCCGCACGTAGCGCCAT
GTCGAGGTCTTCTTGTACCCATCAACACCTCTCGGTTGTGCCGACCGACG
CAAGGGAGATATACTTGCATGAATCGTGTTTCGCGAAGCTTCGATCGCAC
GCGAGGCTGTTGTGAGTGAGCACCCGAGGGTCTCCGCGCGGGCTTGCTGC
GTTACGTCGTTACCTCCAGCCCGCCATGACAAAAGAGACCCACAAAAAAG
AAAGAAGAGCGGTCGTCACCTTACGCGTTTGGGCGGTTGCCCGTGAGGTG
GACACTGACGAAAGATATCCAAATCTAGATTGTGTGCCTGCACTTTACAA
CAGACGGCGGTCGTTGTGGAGGGGAATGAGGGAACAGCCTCCACGCCTTG
CCGCCATTCGTTCGTAATTTGTGATTTGCGGGTAGCGTCCTCGTGGCCGT
GAGACTCGTTTCCAGCGACGCGCCCTGAGTGCAAGAGCTTTTTGCTACCG
CCGTGGTGCCGGTAGGGCTGCCCTGGTGCACGGCGCAGCCGCTGTGCAGC
GAGAGGATTGAGAGCGTGTGCGGCCGCGGTGTGCGCGACCCGCCATCGGT
GGAGGCGGTTTCGTGTGTTGCTGGAGGACGAGCACTACTGTACTTGGTGC
CGAAGCAGTGCCTCTCTGCCGCCCGCCTTGGCTTGACCAAAGAACGACGC
TTGCTCCTGCTTGCCCGCCTTGTTGGTACTTTGTCTGTGCCGTGGCTGCC
CTCTTGGTGTGCCTACCATGCAGGTGTCTATCGACGCGATCGTGGCCGGC
GGCGCAGACATCGACCTCATCGAGCTCCGGACCCTGAAGCCGCTCGACAT
GGAGACCATCGGCATGTCCCTCCGACGCACGCACAAGGTTGGTCCTGTTG
CTAGTGGTGTTGTGTGTGGGCGGTGGTGTTGCTCATGCCGCTGCTGTTTT
CGTTGCGGTTGTCGTTCTAGTCGTTGATGGGGGATGTTTTTTATCGTCCT
CGCTTCCTTTCATCTTCGTGTCGTCGTTTCTGCGGTGGCCGTCTTGCGCG
TGTTCGTGTTCGTGTCCGTCTCCGTGGACAGAACGTCGTCCTTCGCGTAT
CTCTCGAGACCCAGTAGCTCCGTGACCCGCGCTGATTTATCCCAGGCTTC
TCGTTGCATTCGACGAAGTCAAGGCGGACACGCCGTTTCCCCAAGCGGGG
CGTTCACAGAACGAGGCCGTACGGCTATCTTGCCCAATCCCGCCATTGCC
TCCCTCTCGAAAGGCAGCCCCTTTTTTGCAAGGGACATCCCCTTCAATCG
TCCCTCAAAGGAAACGCCCTGCCCCCTCCCCCCTTCGCGCCTTCTCTACG
TGGTTTGGGTAGCCAGCACATCAAGAAGGGAACCCCTTGACTCACCCACT
TCCGCATCGATCCCGTCTAGGTGGCAATTCTTGACGAGAGCACGCGGTCA
GGTGGAGTGGGAGCGTCCATCTCGGCCATCGTGTCGGAGGAGCTGTACGA
CGAGCTTGACGCCCCGGTGAGATTGATCGCTCAAGAATCGAGAGGAGAAC
GGTTAAGCTTCCGTCATGCAATACCAATACCAATACTAACACCAACACCA
ACACCAACACCAACACCAACACCAACAAAGATTCCACGGTCATCCGCAGC
CGCGGTGCAGGCGCTCCGTGTTGGAGATTCTCGCAGCTCACCTTCTCGAA
TCGACGTTGTTTAGCTGGTACCGTTACCACCGGGATGGACGATGTATGAA
GAGGATGCGGCGTATTCACATGTATGTACCGCCTTTGTGGGGTCTATGGG
GCAGGTGTTGGTAATGACGGATTCATTGACGGCAGATTTGTTCCACCTGT
GCTCGTGCCGAGAAGGTTTCTCGGAGGCCCGTCGCTCTTAAGATGCCGCT
TTCCCTGCTGATTTTCGGGTTTTGCTTACGTCAAAGCGGTCTGTCCAAGG
ATCGAGGTGCCATGCCCGGGCTTGAAAGGAACCCGAGATTTCGAGGACGG
TGGGCATTATCATGAACACCGCGCCCCCCCCCCTCCGCTCCCGGGTTCGG
TGAAAATTATTCGAAACCATTCTTCCTTTTTTTCACTGCAGGTGAGGCGT
CTCTGCATGGACGACGCGCCCGTCCCGTACGCATCGAGCATGGAGAAGGC
GGTGGTGAAGCGGGGGGAGGACCTCATCCAGGCCGTGCTGGACCTGGCGA
AGAACGCATGA
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig10939:123..3433+

>mRNA_H-canaliculatus_F_contig10939.868.1 ID=mRNA_H-canaliculatus_F_contig10939.868.1|Name=mRNA_H-canaliculatus_F_contig10939.868.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1188bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10939:123..3433+ (Hapterophycus canaliculatus Oshoro5f female)
ATGGGTATCCCCGGCATCAAGATCTGCACGGCGGCGTCCCCGGAGGCGGC
GTATGGCATCACCAAGTCCATGATCCGCGACAACGGGCCGGGCATCCTGT
TCTGCCCCGTGAAGATGATGAAGGGGGTCAAGGGGGAGCTCGAGCTGGGC
AAGTGCCTGCCCCTGAACAAGGCCGCGGTGCTGCACGCTGCCTCGGAGGA
GTCGGTCGCCAAGGGGACGATGGGTATCCCCGGCATCAAGATCTGCACGG
CGGCGTCCCCGGAGGCGGCGTATGGCATCACCAAGTCCATGATCCGCGAC
AACGGGCCGGGCATCCTGTTCTGCCCCGTGAAGATGATGAAGGGGGTCAA
GGGGGAGCTCGAGCTGGGCAAGTGCCTGCCCCTGAACAAGGCCGCGGTGC
TGCACGCTGCCTCGGAGGAGTCGGTCGCCAAGGGGACGGCGGTGACGGTG
CTCACGTACCTGCACGGGGTCAAGGAGGCGCAGGCGGTGACGGTGCTCAC
GTACCTGCACGGGGTCAAGGAGGCGCAGGTGTCTATCGACGCGATCGTGG
CCGGCGGCGCAGACATCGACCTCATCGAGCTCCGGACCCTGAAGCCGCTC
GACATGGAGACCATCGGCATGTCCCTCCGACGCACGCACAAGGTGTCTAT
CGACGCGATCGTGGCCGGCGGCGCAGACATCGACCTCATCGAGCTCCGGA
CCCTGAAGCCGCTCGACATGGAGACCATCGGCATGTCCCTCCGACGCACG
CACAAGGTGGCAATTCTTGACGAGAGCACGCGGTCAGGTGGAGTGGGAGC
GTCCATCTCGGCCATCGTGTCGGAGGAGCTGTACGACGAGCTTGACGCCC
CGGTGGCAATTCTTGACGAGAGCACGCGGTCAGGTGGAGTGGGAGCGTCC
ATCTCGGCCATCGTGTCGGAGGAGCTGTACGACGAGCTTGACGCCCCGGT
GAGGCGTCTCTGCATGGACGACGCGCCCGTCCCGTACGCATCGAGCATGG
AGAAGGCGGTGGTGAAGCGGGGGGAGGACCTCATCCAGGCCGTGCTGGAC
CTGGCGAAGAACGCATGAGTGAGGCGTCTCTGCATGGACGACGCGCCCGT
CCCGTACGCATCGAGCATGGAGAAGGCGGTGGTGAAGCGGGGGGAGGACC
TCATCCAGGCCGTGCTGGACCTGGCGAAGAACGCATGA
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