mRNA_H-canaliculatus_F_contig1092.860.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig1092.860.1
Unique NamemRNA_H-canaliculatus_F_contig1092.860.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
BLAST of mRNA_H-canaliculatus_F_contig1092.860.1 vs. uniprot
Match: A0A6H5LB25_9PHAE (M16C_associated domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LB25_9PHAE)

HSP 1 Score: 201 bits (512), Expect = 1.100e-57
Identity = 97/113 (85.84%), Postives = 107/113 (94.69%), Query Frame = 1
Query:   28 AAYLTGLDLPQEELDSSIIGAIGDMDGPMPADSKGWTSLRRHLMGHTDETRQRFRDDVLNTKLDDFVEFGKRLEGLKSTASVAVVGSKAAFETHNAEVTDEKKLEIIDPFAQD 366
            AAYLTGLDLPQEE+DSSIIGAIGDMDGPMPADSKGWTSLRRHLMGHTDE RQRFR++VL+TKLDDFVEFGKRLEGLKSTAS+AVVGSKAAFET N   +D+ K+E+IDPFAQ+
Sbjct:  968 AAYLTGLDLPQEEIDSSIIGAIGDMDGPMPADSKGWTSLRRHLMGHTDEARQRFRNEVLDTKLDDFVEFGKRLEGLKSTASIAVVGSKAAFETFNEAASDDGKIEVIDPFAQE 1080          
BLAST of mRNA_H-canaliculatus_F_contig1092.860.1 vs. uniprot
Match: A0A835YY54_9STRA (Metalloenzyme, LuxS/M16 peptidase-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YY54_9STRA)

HSP 1 Score: 114 bits (285), Expect = 4.940e-27
Identity = 58/95 (61.05%), Postives = 68/95 (71.58%), Query Frame = 1
Query:   28 AAYLTGLDLPQEELDSSIIGAIGDMDGPMPADSKGWTSLRRHLMGHTDETRQRFRDDVLNTKLDDFVEFGKRLEGLKSTASVAVVGSKAAFETHN 312
            A YLT L LP +EL  S+IGA+GDMD P  AD KG+ SL+RHL+G +DE RQR RD+VL T  DDF  FG RL+ L S+A  AVVGSKAA E  N
Sbjct:  957 ADYLTSLHLPADELQMSVIGAVGDMDSPQSADQKGFMSLKRHLIGMSDEDRQRIRDEVLATSTDDFKAFGDRLKALNSSARSAVVGSKAALEAAN 1051          
BLAST of mRNA_H-canaliculatus_F_contig1092.860.1 vs. uniprot
Match: A0A7S0JBT0_9EUKA (Hypothetical protein n=1 Tax=Calcidiscus leptoporus TaxID=127549 RepID=A0A7S0JBT0_9EUKA)

HSP 1 Score: 98.6 bits (244), Expect = 2.690e-23
Identity = 48/107 (44.86%), Postives = 73/107 (68.22%), Query Frame = 1
Query:   25 SAAYLTGLDLPQEELDSSIIGAIGDMDGPMPADSKGWTSLRRHLMGHTDETRQRFRDDVLNTKLDDFVEFGKRLEGLKSTASVAVVGSKAAFETHNAEVTDEKKLEI 345
            + A+L    L + EL  +IIGA+G++D P   DS+G+TS+ RHL+G T+  RQ +RD+VL T   DFV+F +R++ L  + SVAVVGS+AA +  NA + + K+L +
Sbjct:   90 TGAFLRANRLSRAELSKAIIGAVGELDAPQSVDSRGFTSMLRHLLGVTEADRQIWRDEVLGTTPSDFVQFAERMDALAGSGSVAVVGSEAALDAANALLPEAKRLRV 196          
BLAST of mRNA_H-canaliculatus_F_contig1092.860.1 vs. uniprot
Match: A0A835Z6U5_9STRA (Metalloenzyme, LuxS/M16 peptidase-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z6U5_9STRA)

HSP 1 Score: 95.9 bits (237), Expect = 4.610e-21
Identity = 50/107 (46.73%), Postives = 70/107 (65.42%), Query Frame = 1
Query:   25 SAAYLTGLDLPQEELDSSIIGAIGDMDGPMPADSKGWTSLRRHLMGHTDETRQRFRDDVLNTKLDDFVEFGKRLEGLKSTASVAVVGSKAAFETHNAEVTDEKKLEI 345
            +AA+L GL LP+++L+S +IG I  +D P+   S+   SLRRHL+G TD+  Q FRD++L T ++DF  FGKRL+   S+A  AVV SK A    NAE+  + K  I
Sbjct:  252 AAAHLAGLTLPKKDLESFVIGTISGLDRPLAVGSQALLSLRRHLIGITDQHVQGFRDELLATTMEDFKSFGKRLKKFNSSAKAAVVASKIALTEANAELKGDDKFVI 358          
BLAST of mRNA_H-canaliculatus_F_contig1092.860.1 vs. uniprot
Match: A0A7S3M1Z2_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3M1Z2_9STRA)

HSP 1 Score: 94.4 bits (233), Expect = 5.080e-20
Identity = 46/112 (41.07%), Postives = 71/112 (63.39%), Query Frame = 1
Query:   25 SAAYLTGLDLPQEELDSSIIGAIGDMDGPMPADSKGWTSLRRHLMGHTDETRQRFRDDVLNTKLDDFVEFGKRLEGLKSTASVAVVGSKAAFETHNAEVTDEKKLEIIDPFA 360
            +A  L+  DL  E+L  ++IG IGD+DGPM AD KG+ +L + L G T E RQ++R  +L T+  DF EF  RL  L+S+  + V G++ A +T NA++ D++ L++    A
Sbjct:  971 TATALSEADLSSEDLLQAVIGTIGDLDGPMTADQKGFAALEQFLSGETAEDRQKWRTSILQTQAGDFKEFAARLGELRSSGRIVVFGAQQAIDTANAKLPDDRNLKVESALA 1082          
BLAST of mRNA_H-canaliculatus_F_contig1092.860.1 vs. uniprot
Match: A0A7S1E357_9STRA (Hypothetical protein n=1 Tax=Thalassionema nitzschioides TaxID=33649 RepID=A0A7S1E357_9STRA)

HSP 1 Score: 87.0 bits (214), Expect = 2.280e-19
Identity = 44/86 (51.16%), Postives = 59/86 (68.60%), Query Frame = 1
Query:   61 EELDSSIIGAIGDMDGPMPADSKGWTSLRRHLMGHTDETRQRFRDDVLNTKLDDFVEFGKRLEGLKSTASVAVVGSKAAFETHNAE 318
            E L +++IGA+GDMDG +  D KGW +  R L+  T E+RQR RD+VLNTK  DF +F +RL+ +K+ +S AVV SK AFE    E
Sbjct:   52 EALATAVIGAVGDMDGALSPDQKGWAAFSRWLIRETPESRQRRRDEVLNTKASDFKDFAERLKNMKNPSS-AVVSSKGAFEAAEKE 136          
BLAST of mRNA_H-canaliculatus_F_contig1092.860.1 vs. uniprot
Match: A0A7S1XMW9_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XMW9_9STRA)

HSP 1 Score: 92.0 bits (227), Expect = 3.260e-19
Identity = 46/109 (42.20%), Postives = 68/109 (62.39%), Query Frame = 1
Query:   25 SAAYLTGLDLPQEELDSSIIGAIGDMDGPMPADSKGWTSLRRHLMGHTDETRQRFRDDVLNTKLDDFVEFGKRLEGL-KSTASVAVVGSKAAFETHNAEVTDEKKLEII 348
            SA +L   +L ++ +  ++IG +GD D P   D+KGW SL  HL+G TDE RQR RD+VL T ++D  + GKRL+ L K+  S+ V+GS  + E  NA   D K + ++
Sbjct:  914 SADHLISAELDEKTVQQAVIGTVGDFDSPRSVDAKGWLSLADHLVGRTDEQRQRRRDEVLATNVEDVRDLGKRLDSLNKNGPSICVIGSAKSIEEANAAGLDLKVINVL 1022          
BLAST of mRNA_H-canaliculatus_F_contig1092.860.1 vs. uniprot
Match: A0A7C5PS16_9CHLR (Peptidase M16 n=1 Tax=Anaerolineae bacterium TaxID=2052143 RepID=A0A7C5PS16_9CHLR)

HSP 1 Score: 91.3 bits (225), Expect = 5.940e-19
Identity = 46/94 (48.94%), Postives = 64/94 (68.09%), Query Frame = 1
Query:   34 YLTGLDLPQEELDSSIIGAIGDMDGPMPADSKGWTSLRRHLMGHTDETRQRFRDDVLNTKLDDFVEFGKRLEGLKSTASVAVVGSKAAFETHNA 315
            YL  L+L ++EL+ +IIG+IG MD     D+KG+TS+ RHL+G+TDE RQR RD++L+T    F  FG  LE +K+   V V+GS+ A E  NA
Sbjct:  686 YLRQLELSKQELEKTIIGSIGSMDAYQQPDAKGFTSMVRHLLGYTDEMRQRIRDEILSTTPAHFKAFGDVLEEVKTQGQVVVLGSEEAIEAANA 779          
BLAST of mRNA_H-canaliculatus_F_contig1092.860.1 vs. uniprot
Match: F0YC48_AURAN (M16C_associated domain-containing protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YC48_AURAN)

HSP 1 Score: 91.3 bits (225), Expect = 6.060e-19
Identity = 46/107 (42.99%), Postives = 69/107 (64.49%), Query Frame = 1
Query:   25 SAAYLTGLDLPQEELDSSIIGAIGDMDGPMPADSKGWTSLRRHLMGHTDETRQRFRDDVLNTKLDDFVEFGKRLEGLKSTASVAVVGSKAAFETHNAEVTDEKKLEI 345
            +AA++  L +   EL  +++ AIGD+DGPM  D++G+ SLR +L G TDE RQ++RD+VL    +DF  F  RL+ + + A  +V  S AAF+  NAE+ D  KL +
Sbjct:  921 AAAWMDELVVDDAELTKAVVAAIGDLDGPMTPDTRGFVSLRHYLDGTTDELRQQWRDEVLAATPEDFKAFSTRLKAMMADAKSSVFASAAAFDEANAELPDADKLSV 1027          
BLAST of mRNA_H-canaliculatus_F_contig1092.860.1 vs. uniprot
Match: A0A497IS59_9EURY (Peptidase M16 (Fragment) n=1 Tax=Methanosarcinales archaeon TaxID=2250255 RepID=A0A497IS59_9EURY)

HSP 1 Score: 89.4 bits (220), Expect = 1.970e-18
Identity = 44/94 (46.81%), Postives = 66/94 (70.21%), Query Frame = 1
Query:   25 SAAYLTGLDLPQEELDSSIIGAIGDMDGPMPADSKGWTSLRRHLMGHTDETRQRFRDDVLNTKLDDFVEFGKRLEGLKSTASVAVVGSKAAFET 306
            + ++L+G +L ++EL   IIGAIGD+D  M  D+KG+TS+ RHL G T+E RQ+ RD++L+TK+ DF  F   LE +K+   V ++GS +A ET
Sbjct:  323 TGSFLSGKNLGEKELTKGIIGAIGDLDAYMLPDTKGYTSMLRHLTGDTEEDRQQMRDEILSTKIADFRAFADLLEKVKNEWIVKILGSPSAIET 416          
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1092.860.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5LB25_9PHAE1.100e-5785.84M16C_associated domain-containing protein n=1 Tax=... [more]
A0A835YY54_9STRA4.940e-2761.05Metalloenzyme, LuxS/M16 peptidase-like protein n=1... [more]
A0A7S0JBT0_9EUKA2.690e-2344.86Hypothetical protein n=1 Tax=Calcidiscus leptoporu... [more]
A0A835Z6U5_9STRA4.610e-2146.73Metalloenzyme, LuxS/M16 peptidase-like protein n=1... [more]
A0A7S3M1Z2_9STRA5.080e-2041.07Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]
A0A7S1E357_9STRA2.280e-1951.16Hypothetical protein n=1 Tax=Thalassionema nitzsch... [more]
A0A7S1XMW9_9STRA3.260e-1942.20Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A7C5PS16_9CHLR5.940e-1948.94Peptidase M16 n=1 Tax=Anaerolineae bacterium TaxID... [more]
F0YC48_AURAN6.060e-1942.99M16C_associated domain-containing protein n=1 Tax=... [more]
A0A497IS59_9EURY1.970e-1846.81Peptidase M16 (Fragment) n=1 Tax=Methanosarcinales... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig1092contigH-canaliculatus_F_contig1092:29062..30473 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score94.4
Seed ortholog evalue4.1e-17
Seed eggNOG ortholog44056.XP_009037871.1
KEGG koko:K06972
GOsGO:0003674,GO:0003824,GO:0004175,GO:0004222,GO:0005575,GO:0005576,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005759,GO:0006508,GO:0006807,GO:0008150,GO:0008152,GO:0008233,GO:0008237,GO:0009507,GO:0009526,GO:0009532,GO:0009536,GO:0009570,GO:0009941,GO:0010035,GO:0010038,GO:0010467,GO:0016485,GO:0016787,GO:0019538,GO:0031967,GO:0031974,GO:0031975,GO:0042221,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0044238,GO:0044422,GO:0044424,GO:0044429,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0046686,GO:0048046,GO:0050896,GO:0051604,GO:0070011,GO:0070013,GO:0071704,GO:0140096,GO:1901564
EggNOG free text desc.metallopeptidase activity
EggNOG OGsCOG1026@1,KOG2019@2759
COG Functional cat.T
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko01002
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionMetalloenzyme, LuxS/M16 peptidase-like
Ec32 orthologEc-06_010820.1
Exons3
Model size369
Cds size369
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig1092.860.1prot_H-canaliculatus_F_contig1092.860.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig1092 29062..30473 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928762.2305193-CDS-H-canaliculatus_F_contig1092:29061..291781622928762.2305193-CDS-H-canaliculatus_F_contig1092:29061..29178Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1092 29062..29178 -
1696845554.3855565-CDS-H-canaliculatus_F_contig1092:29061..291781696845554.3855565-CDS-H-canaliculatus_F_contig1092:29061..29178Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1092 29062..29178 -
1622928762.24263-CDS-H-canaliculatus_F_contig1092:29673..297271622928762.24263-CDS-H-canaliculatus_F_contig1092:29673..29727Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1092 29674..29727 -
1696845554.3988504-CDS-H-canaliculatus_F_contig1092:29673..297271696845554.3988504-CDS-H-canaliculatus_F_contig1092:29673..29727Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1092 29674..29727 -
1622928762.2562041-CDS-H-canaliculatus_F_contig1092:30275..304731622928762.2562041-CDS-H-canaliculatus_F_contig1092:30275..30473Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1092 30276..30473 -
1696845554.4075458-CDS-H-canaliculatus_F_contig1092:30275..304731696845554.4075458-CDS-H-canaliculatus_F_contig1092:30275..30473Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1092 30276..30473 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig1092.860.1

>prot_H-canaliculatus_F_contig1092.860.1 ID=prot_H-canaliculatus_F_contig1092.860.1|Name=mRNA_H-canaliculatus_F_contig1092.860.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=123bp
PPPPPLFPSAAYLTGLDLPQEELDSSIIGAIGDMDGPMPADSKGWTSLRR
HLMGHTDETRQRFRDDVLNTKLDDFVEFGKRLEGLKSTASVAVVGSKAAF
ETHNAEVTDEKKLEIIDPFAQD*
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mRNA from alignment at H-canaliculatus_F_contig1092:29062..30473-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig1092.860.1 ID=mRNA_H-canaliculatus_F_contig1092.860.1|Name=mRNA_H-canaliculatus_F_contig1092.860.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=1412bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1092:29062..30473- (Hapterophycus canaliculatus Oshoro5f female)
CCCCCCCCCCCCCCCCTTTTCCCCTCGGCAGCGTACCTAACGGGTCTCGA CCTCCCCCAGGAGGAGCTGGACTCGAGCATCATCGGGGCTATCGGAGACA TGGACGGCCCCATGCCGGCTGATTCGAAGGGGTGGACTAGTCTACGAAGG CACCTGATGGGCCACACCGACGAAACTCGGCAACGATTTAGGGACGACGT GAGCGTGGCGTTGTACAGAATGACACCGTGACCGCGCATCATATAACGAC CTGATGAAGTGCTTTGATTTTCCCTTGATGTTGTGGTTTCCTTTCCGAAA GAAGTGAGCGGCTCATCTCGGTCGAGGTACAAATACCGGTCGAACACCTT TGTTTGCATATCGCGTAGGAAATGGATCGAAGTTTTCGGGGAGAGAAGCG GCGTTGAACCTATTCCTGTGTGTGCCTCGGGTGGTATTGTTTCATTGTAC CGCTGTGTTGTACGAAGAATACTGTGACGAAGGCTGGCTTGCTTCAAGCA TGTTAGGGTTCTGTTTCCCCTGATTTTCGACTTTTCGACTTGTCGACCTT TCTCCTTGTTTGTTGTGCCTGAGTGGCGCTCCTCATCTCGTTTGTCTTCT CCGATGGTCGGTATGCTTTGCTCCTTCTGTTTTGTGTGGCTCCTTCTATA CGCCCATGATGCAACATTCCCCCCACCCCACCCCTTGCCACCACTGCCTG CCTCCGCCACTGCCGCTGCTGTGGTCAACCCCGCCACCAATCACAGGTGC TGAACACCAAGCTCGACGACTTCGTCGAGTTCGGAAAGCGGCTTGAGGGG GTGAGTTTGTTTCATGTCTGCTTATCGAGACGTGTCGTAGAGGACCCAGC TTCCATTCCTGCACCACGGCGGTTGTCAGGAGCAACAAGTACGACGCATC GACACACCGAACGCTTTGCAAGTTGACGAGGGGACTCCTCTGATACAAAA ATAGTGTGTTGCGTGTTTTACTCGAATGTGTATGTAGCCTCTAGAGCTTA CGAGAGTGTTCGCATTTTGCACCTCATCCCAAGCTGTGTCTTGGAAATTT CATCCACTGGGCGAAAATGTAGGGCTTCCAAAGTCAAGTCGAGCTGGCTA AATACTACATGACGGAGCGCAGCCGCGCAGCAACAGTCCGACGGTCAAGC GCTCCAACATCGGGACAGGTTTCGAGCGGCGCCGTTGCTGTCTTACACAC CGACAAACTTTTTGACGTGTCCTAATCCCCTCGCACCGCCTGCTCCTTTT TTGCAACATCCTCATGCCGCTGTTCTGTCATGTCATCTGCGATAGCTCAA GTCGACGGCCAGCGTTGCGGTGGTGGGTTCCAAGGCGGCGTTCGAGACAC ACAACGCCGAAGTCACCGACGAGAAAAAGTTGGAGATCATCGACCCCTTC GCGCAGGACTAG
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig1092:29062..30473-

>mRNA_H-canaliculatus_F_contig1092.860.1 ID=mRNA_H-canaliculatus_F_contig1092.860.1|Name=mRNA_H-canaliculatus_F_contig1092.860.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=738bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1092:29062..30473- (Hapterophycus canaliculatus Oshoro5f female)
CCCCCCCCCCCCCCCCTTTTCCCCTCGGCAGCGTACCTAACGGGTCTCGA
CCTCCCCCAGGAGGAGCTGGACTCGAGCATCATCGGGGCTATCGGAGACA
TGGACGGCCCCATGCCGGCTGATTCGAAGGGGTGGACTAGTCTACGAAGG
CACCTGATGGGCCACACCGACGAAACTCGGCAACGATTTAGGGACGACCC
CCCCCCCCCCCCCCTTTTCCCCTCGGCAGCGTACCTAACGGGTCTCGACC
TCCCCCAGGAGGAGCTGGACTCGAGCATCATCGGGGCTATCGGAGACATG
GACGGCCCCATGCCGGCTGATTCGAAGGGGTGGACTAGTCTACGAAGGCA
CCTGATGGGCCACACCGACGAAACTCGGCAACGATTTAGGGACGACGTGC
TGAACACCAAGCTCGACGACTTCGTCGAGTTCGGAAAGCGGCTTGAGGGG
GTGCTGAACACCAAGCTCGACGACTTCGTCGAGTTCGGAAAGCGGCTTGA
GGGGCTCAAGTCGACGGCCAGCGTTGCGGTGGTGGGTTCCAAGGCGGCGT
TCGAGACACACAACGCCGAAGTCACCGACGAGAAAAAGTTGGAGATCATC
GACCCCTTCGCGCAGGACTAGCTCAAGTCGACGGCCAGCGTTGCGGTGGT
GGGTTCCAAGGCGGCGTTCGAGACACACAACGCCGAAGTCACCGACGAGA
AAAAGTTGGAGATCATCGACCCCTTCGCGCAGGACTAG
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