mRNA_H-canaliculatus_F_contig10745.708.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig10745.708.1
Unique NamemRNA_H-canaliculatus_F_contig10745.708.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig10745.708.1 vs. uniprot
Match: D8LMZ2_ECTSI (COG2350: Uncharacterized protein conserved in bacteria n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMZ2_ECTSI)

HSP 1 Score: 274 bits (700), Expect = 3.950e-82
Identity = 128/143 (89.51%), Postives = 135/143 (94.41%), Query Frame = 1 
Query:  370 RFNEIDLCGIGLGRANRIDPMRDAMAKEGLDRECEYPVNFGKYDLFENMKWLKTEVEKKQQQQYMEHRLKLYQQRDRRIEKEQINEGALFRPGAYVYMGKRTETEWYDYWPSRVGPDADAAGEEFYSLKASYPPVDHFEDDLD 798
            RFNEIDL GIGL RANRIDPMRD MAKEGLDRECEYPV FGKYDLFENMKWLKTEVEKKQ+QQYMEHRLKLYQQRDRRIE+E+INEGALFRPG YVYMGKRTETEWYDYWP++ GPDADAAGEEFY++ A YPPVDHFEDDLD
Sbjct:  391 RFNEIDLSGIGLVRANRIDPMRDMMAKEGLDRECEYPVKFGKYDLFENMKWLKTEVEKKQEQQYMEHRLKLYQQRDRRIEREEINEGALFRPGVYVYMGKRTETEWYDYWPTKAGPDADAAGEEFYTMDACYPPVDHFEDDLD 533
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BLAST of mRNA_H-canaliculatus_F_contig10745.708.1 vs. uniprot
Match: A0A6H5JNB6_9PHAE (YCII domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNB6_9PHAE)

HSP 1 Score: 244 bits (623), Expect = 4.290e-71
Identity = 126/204 (61.76%), Postives = 135/204 (66.18%), Query Frame = 1 
Query:  370 RFNEIDLCGIGLGRANRIDPMRDAMAKEGLDRECEYPVNFGKYDLFENMKWLKTEVEKKQQQQYMEHRLKLYQQR-------------------------------------------------------------DRRIEKEQINEGALFRPGAYVYMGKRTETEWYDYWPSRVGPDADAAGEEFYSLKASYPPVDHFEDDLD 798
            RFNEIDL GIGL RANRIDPMRD MA+EGLDRECEYPV FGKYDLFENMKWLKTEVEKKQ+QQYMEHRLKLYQQR                                                             DRRIE+E++NEGALFRPG YVYMGKRTETEWYDYWP++ GPDADAAGEEFY++ A YPPVDHFEDDLD
Sbjct:  302 RFNEIDLSGIGLVRANRIDPMRDMMAQEGLDRECEYPVKFGKYDLFENMKWLKTEVEKKQEQQYMEHRLKLYQQRCVGGGAVVTSADDTPRWYDGMPSYGGRNVRAGTAVKAPVSAAVEGFSDVWLKAAHTVVVARDRRIEREEVNEGALFRPGVYVYMGKRTETEWYDYWPTKAGPDADAAGEEFYTMDACYPPVDHFEDDLD 505
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig10745.708.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LMZ2_ECTSI3.950e-8289.51COG2350: Uncharacterized protein conserved in bact... [more]
A0A6H5JNB6_9PHAE4.290e-7161.76YCII domain-containing protein n=1 Tax=Ectocarpus ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig10745contigH-canaliculatus_F_contig10745:839..3650 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score238.8
Seed ortholog evalue1.3e-60
Seed eggNOG ortholog2880.D8LMZ2
EggNOG OGs2E392@1,2SAD8@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionYCII-related
Ec32 orthologEc-16_001160.1
Exons4
Model size1538
Cds size372
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig10745.708.1prot_H-canaliculatus_F_contig10745.708.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig10745 1268..2913 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928737.8501472-UTR-H-canaliculatus_F_contig10745:838..12671622928737.8501472-UTR-H-canaliculatus_F_contig10745:838..1267Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig10745 839..1267 +
1696845545.1878324-UTR-H-canaliculatus_F_contig10745:838..12671696845545.1878324-UTR-H-canaliculatus_F_contig10745:838..1267Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig10745 839..1267 +
1622928737.9688554-UTR-H-canaliculatus_F_contig10745:2913..36501622928737.9688554-UTR-H-canaliculatus_F_contig10745:2913..3650Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig10745 2914..3650 +
1696845545.2544386-UTR-H-canaliculatus_F_contig10745:2913..36501696845545.2544386-UTR-H-canaliculatus_F_contig10745:2913..3650Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig10745 2914..3650 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928737.8790338-CDS-H-canaliculatus_F_contig10745:1267..12881622928737.8790338-CDS-H-canaliculatus_F_contig10745:1267..1288Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10745 1268..1288 +
1696845545.2002306-CDS-H-canaliculatus_F_contig10745:1267..12881696845545.2002306-CDS-H-canaliculatus_F_contig10745:1267..1288Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10745 1268..1288 +
1622928737.895878-CDS-H-canaliculatus_F_contig10745:1759..19021622928737.895878-CDS-H-canaliculatus_F_contig10745:1759..1902Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10745 1760..1902 +
1696845545.2161276-CDS-H-canaliculatus_F_contig10745:1759..19021696845545.2161276-CDS-H-canaliculatus_F_contig10745:1759..1902Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10745 1760..1902 +
1622928737.9251783-CDS-H-canaliculatus_F_contig10745:2387..24801622928737.9251783-CDS-H-canaliculatus_F_contig10745:2387..2480Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10745 2388..2480 +
1696845545.2330875-CDS-H-canaliculatus_F_contig10745:2387..24801696845545.2330875-CDS-H-canaliculatus_F_contig10745:2387..2480Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10745 2388..2480 +
1622928737.9477434-CDS-H-canaliculatus_F_contig10745:2798..29131622928737.9477434-CDS-H-canaliculatus_F_contig10745:2798..2913Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10745 2799..2913 +
1696845545.244129-CDS-H-canaliculatus_F_contig10745:2798..29131696845545.244129-CDS-H-canaliculatus_F_contig10745:2798..2913Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10745 2799..2913 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig10745.708.1

>prot_H-canaliculatus_F_contig10745.708.1 ID=prot_H-canaliculatus_F_contig10745.708.1|Name=mRNA_H-canaliculatus_F_contig10745.708.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=124bp
MRDAMAKEGLDRECEYPVNFGKYDLFENMKWLKTEVEKKQQQQYMEHRLK
LYQQRDRRIEKEQINEGALFRPGAYVYMGKRTETEWYDYWPSRVGPDADA
AGEEFYSLKASYPPVDHFEDDLD*
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mRNA from alignment at H-canaliculatus_F_contig10745:839..3650+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig10745.708.1 ID=mRNA_H-canaliculatus_F_contig10745.708.1|Name=mRNA_H-canaliculatus_F_contig10745.708.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=2812bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10745:839..3650+ (Hapterophycus canaliculatus Oshoro5f female)
CGGGGTTTGTGTCGCGGCTGCTGCATCTCGACACCCTGCGTGACCGTCGC
TGCCGTTGTCGTACGGGATGAATTGTTCGGTTGGAAGAGTAGGCACTGCG
TTTGTCTCAGGTGATCCATGTGAAAGGCGGCAGTAGGGTTGCCCCGGAAG
GATGTTAATTTTGCCGTGCATGCAAGCCAAAAAAGCTCTCCCCAGCCCTT
AGACCCTAGACCCGAAGGATGTTCATTTTGCCGTGCATGCAAGCCAAAAT
AGCTCTCCCCAGACCTTAGACCGTAGACCCTCCCCGTTCTCTCTCTTCGT
CGCCTTCGTTGCTCCTCTGCTTTCGGTGTATCGAACACAATCACCACCGG
GGTTTGCTTTTGCGATGGCAGGTTCAACGAGATCGACTTGTGTGGGATTG
GTCTTGGGAGGGCAAACAGGATCGACCCGATGAGGGACGCCATGGCAAAG
GTATTCGTAGATTTAGCTGTAGTCCGCCCAAAGTCGTGTGGCGACAAACC
TTTTTCGATGGTGGAGAATGGATCGACTGGCCATGCGGCCGACTGATGTA
GAGCGCCGTCGGCGGGGCGTCTTTCCTCGACGTCAAGCATGGTCAACAAG
ATCTGATCCTCTGTGGACGAGGCAGGCGCTTGGGTTGGGGCACGTTTTAG
GTCGCGAGCGTTGAGGAGAACACGACAACTTGGAGAGAAAGTCCGCGCCG
CCAATGCATACAAGCAGTTGGTTCAACTGCATCCTCGAACATGCAACGAG
AGGGCCTGAGCTGTCGAGTCCACAGCATCTCTCCGTCTGCGCAGGGGGTC
GGCCACTTTTCATGTTCTCTTCTCTGGTGCGTGCGAAAGTTTGCCTTTGT
CCTGCTCTCATGTCGAGTCTCGCCAATATGTTGGCAAATCTGTTCCGTCG
TCTTGTGTGGTGGCGTTTCAGGAGGGCCTGGACCGTGAGTGCGAGTATCC
CGTAAACTTCGGCAAGTACGACCTGTTCGAAAATATGAAGTGGCTCAAGA
CCGAGGTGGAAAAGAAGCAGCAGCAGCAGTACATGGAGCACAGGCTCAAG
CTCTACCAGCAGAGGTGCGTGATTGCGTGCTCAAATTTGATCCTCGACAG
TTGGCGCATTTCACCGTATTCCTATAGCGCTGCCATGCACGCATGTTTAT
GGGGGTCGAAGTGACGGATGGAACGACCCCGGACACCGAGAGGGTAGAAG
CTCGAGCTCTGTACTGTACGCCAACGCTATCGGCAGCGTGGATCGGTTGT
TGGAAATGCCTCCCCTTTTCAGACTTCATCGTTCAGTGAGGGAAAACGAT
GACAGCAACCGTAACACACCTCAAGCCAACAAATCGGCGCGACTTCTCCT
GGCTGCCGGGAGTATTTGCTAGACGTCATGGGCAGTGACGTGACATGTAA
GCTGATAATTATGCGAAGCAGGAGACCGACGACGGAACACGGAGTATACG
GCGCGCTTTTGATTTTGCGCATTCGTTACACCCCAACCTCGCCACTGTTC
CCCCCCCCACGGTCAAACACATGTCTTTTCTCTCCCATGTGTCTCAAAGG
GACCGGAGGATAGAGAAGGAACAGATCAACGAGGGTGCTCTTTTCAGGCC
GGGAGCATATGTGTACATGGGCAAGCGAACCGAAACAGAGTGGTGAGTAT
TTCTCCTGCCTGCTTGATTTGAAACTGCAGAGATGGAACGTATAAATTAC
CGGTTGGGGAGCGAGGTCGGATGTGGGATGTTTAGTACAGGGGGTTTCCA
CCAAGCTGCGCTGGAGGCCAAGAACGCTTGTGTTGCGTTCTTGGTTAGTT
TCGGAAATCCAAAAACTCTTCATGAACTGAACGAAACCCTTGTCGCTGGG
TTGGTGCTTAATATGTCCCCCCCCCTTCCCTTTCTTCCGTCCTTAATCGC
CCCGCCACCATTTGTATCGAACATGACATTCTTCGTTGGGTTCCTACGGG
TAATCGGCAGGTACGATTACTGGCCTTCCAGGGTTGGCCCCGACGCGGAC
GCCGCTGGTGAGGAGTTTTATAGCCTGAAGGCCAGCTACCCTCCCGTCGA
CCACTTCGAGGACGACTTGGATTGATCTCTTTCATCTGCTTTGTGAAGGA
ATTTGAGCTTGGATTGGGTCCAGCTCGCGATATCGGCTTGCTCCCTGCGA
CCTGATGAAGATGGAATGCGAGTTTTGCAGTCTGTGCAAGTGTTGCTCAA
GGCCGCAAGACGTGTGAAAGCGAGCTCCGGCCGTTCTGTCTTTTTGAATG
ATGATGCCATTCGATCCTGTTGCGGTGAAATGGACGGCTCAGTCCAGTCT
TTTCCAAATTGTGAAGATCTCGACATCTGGGAAGGTGCCATACGGTCAAC
AATGTACCTCAGATGACAAGTTGGCGGCATCGACACCAACAATCGGATTC
AATGTGTGACCCCGGCTGGTACGTCTTCTCAGTTGTCCAGAGACGGAAGA
CCGCAATATGTACGCGCACGTACACCGAAACGTGTACGTGCGCCGAAGAG
AAGACAGATCAGGCCAAAATAGATGGGATGAAAATATATGTTACATATGT
CAAGTCTGATATCGGGGGTCGAGTGATGATGCTGGTCCCTGCATCATTGA
TTGCCAAGAATCAGGCTCCATCTTCATCGAACCCAAGGGGGGCGTGGTGG
TGCTGAGGTCGGGAAATGCCCGCGCTGGCAAGTGGCAAAACGCAACAAAC
TAAACTTCCAGAAGGCTTCGGTACCATCGCCTTTGCAAAGAGTGCAAGCT
TTTTTTCGCTGGACGATGCATACAAGGGCGGACGCAAAAATGATTCGCTT
TGAAATTCTCGC
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig10745:839..3650+

>mRNA_H-canaliculatus_F_contig10745.708.1 ID=mRNA_H-canaliculatus_F_contig10745.708.1|Name=mRNA_H-canaliculatus_F_contig10745.708.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=744bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10745:839..3650+ (Hapterophycus canaliculatus Oshoro5f female)
ATGAGGGACGCCATGGCAAAGATGAGGGACGCCATGGCAAAGGAGGGCCT
GGACCGTGAGTGCGAGTATCCCGTAAACTTCGGCAAGTACGACCTGTTCG
AAAATATGAAGTGGCTCAAGACCGAGGTGGAAAAGAAGCAGCAGCAGCAG
TACATGGAGCACAGGCTCAAGCTCTACCAGCAGAGGAGGGCCTGGACCGT
GAGTGCGAGTATCCCGTAAACTTCGGCAAGTACGACCTGTTCGAAAATAT
GAAGTGGCTCAAGACCGAGGTGGAAAAGAAGCAGCAGCAGCAGTACATGG
AGCACAGGCTCAAGCTCTACCAGCAGAGGGACCGGAGGATAGAGAAGGAA
CAGATCAACGAGGGTGCTCTTTTCAGGCCGGGAGCATATGTGTACATGGG
CAAGCGAACCGAAACAGAGTGGGACCGGAGGATAGAGAAGGAACAGATCA
ACGAGGGTGCTCTTTTCAGGCCGGGAGCATATGTGTACATGGGCAAGCGA
ACCGAAACAGAGTGGTACGATTACTGGCCTTCCAGGGTTGGCCCCGACGC
GGACGCCGCTGGTGAGGAGTTTTATAGCCTGAAGGCCAGCTACCCTCCCG
TCGACCACTTCGAGGACGACTTGGATTGAGTACGATTACTGGCCTTCCAG
GGTTGGCCCCGACGCGGACGCCGCTGGTGAGGAGTTTTATAGCCTGAAGG
CCAGCTACCCTCCCGTCGACCACTTCGAGGACGACTTGGATTGA
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