mRNA_H-canaliculatus_F_contig1073.699.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig1073.699.1
Unique NamemRNA_H-canaliculatus_F_contig1073.699.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig1073.699.1 vs. uniprot
Match: A0A6H5L5I7_9PHAE (Lipid_desat domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5I7_9PHAE)

HSP 1 Score: 70.5 bits (171), Expect = 7.550e-12
Identity = 32/39 (82.05%), Postives = 37/39 (94.87%), Query Frame = 1 
Query:  217 EEVLVDDKGRPYNLGPEGFVRDLNTRAVRIARRVVEKSQ 333
            EEVL+D+KGRPYNLGP GFVRDLNTRAV+IARRV ++SQ
Sbjct:   44 EEVLIDNKGRPYNLGPRGFVRDLNTRAVKIARRVAQQSQ 82
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1073.699.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5L5I7_9PHAE7.550e-1282.05Lipid_desat domain-containing protein n=1 Tax=Ecto... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig1073contigH-canaliculatus_F_contig1073:2095..2445 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionB-domain containing protein Kua
Ec32 orthologEc-05_006720.1
Exons1
Model size351
Cds size351
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928736.3437147-CDS-H-canaliculatus_F_contig1073:2094..24451622928736.3437147-CDS-H-canaliculatus_F_contig1073:2094..2445Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1073 2095..2445 +
1696845544.598142-CDS-H-canaliculatus_F_contig1073:2094..24451696845544.598142-CDS-H-canaliculatus_F_contig1073:2094..2445Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1073 2095..2445 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig1073.699.1prot_H-canaliculatus_F_contig1073.699.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig1073 2095..2445 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig1073.699.1

>prot_H-canaliculatus_F_contig1073.699.1 ID=prot_H-canaliculatus_F_contig1073.699.1|Name=mRNA_H-canaliculatus_F_contig1073.699.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=117bp
PRGRSHRLQEKGENSRASSFCRATMPPQQAAASPSPAVSVNSVTIQPGTG
VVRIGHGRTVGAASAAGRREQDEEVLVDDKGRPYNLGPEGFVRDLNTRAV
RIARRVVEKSQAKEAAA
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mRNA from alignment at H-canaliculatus_F_contig1073:2095..2445+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig1073.699.1 ID=mRNA_H-canaliculatus_F_contig1073.699.1|Name=mRNA_H-canaliculatus_F_contig1073.699.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=351bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1073:2095..2445+ (Hapterophycus canaliculatus Oshoro5f female)
CCACGGGGAAGAAGCCACCGTCTGCAAGAGAAAGGAGAGAATTCTCGAGC
GTCAAGCTTTTGCCGGGCAACCATGCCACCGCAGCAGGCAGCAGCTTCCC
CCTCCCCGGCGGTGAGCGTCAACAGCGTCACGATCCAGCCGGGTACTGGG
GTTGTGCGGATCGGCCACGGCAGAACCGTTGGGGCGGCGTCGGCGGCCGG
GCGACGCGAGCAAGACGAGGAAGTGCTGGTCGATGACAAGGGCAGGCCGT
ACAACCTTGGTCCCGAGGGCTTCGTGCGAGACCTCAACACGCGAGCGGTG
AGGATCGCGCGCAGGGTTGTAGAGAAGTCGCAAGCGAAGGAAGCAGCAGC
A
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig1073:2095..2445+

>mRNA_H-canaliculatus_F_contig1073.699.1 ID=mRNA_H-canaliculatus_F_contig1073.699.1|Name=mRNA_H-canaliculatus_F_contig1073.699.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=702bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1073:2095..2445+ (Hapterophycus canaliculatus Oshoro5f female)
CCACGGGGAAGAAGCCACCGTCTGCAAGAGAAAGGAGAGAATTCTCGAGC
GTCAAGCTTTTGCCGGGCAACCATGCCACCGCAGCAGGCAGCAGCTTCCC
CCTCCCCGGCGGTGAGCGTCAACAGCGTCACGATCCAGCCGGGTACTGGG
GTTGTGCGGATCGGCCACGGCAGAACCGTTGGGGCGGCGTCGGCGGCCGG
GCGACGCGAGCAAGACGAGGAAGTGCTGGTCGATGACAAGGGCAGGCCGT
ACAACCTTGGTCCCGAGGGCTTCGTGCGAGACCTCAACACGCGAGCGGTG
AGGATCGCGCGCAGGGTTGTAGAGAAGTCGCAAGCGAAGGAAGCAGCAGC
ACCACGGGGAAGAAGCCACCGTCTGCAAGAGAAAGGAGAGAATTCTCGAG
CGTCAAGCTTTTGCCGGGCAACCATGCCACCGCAGCAGGCAGCAGCTTCC
CCCTCCCCGGCGGTGAGCGTCAACAGCGTCACGATCCAGCCGGGTACTGG
GGTTGTGCGGATCGGCCACGGCAGAACCGTTGGGGCGGCGTCGGCGGCCG
GGCGACGCGAGCAAGACGAGGAAGTGCTGGTCGATGACAAGGGCAGGCCG
TACAACCTTGGTCCCGAGGGCTTCGTGCGAGACCTCAACACGCGAGCGGT
GAGGATCGCGCGCAGGGTTGTAGAGAAGTCGCAAGCGAAGGAAGCAGCAG
CA
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